RNA–Protein interactions for RNA: ENST00000263388.6

NOTCH3-201, Transcript of notch 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NOTCH3, Length 8,666 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3-201ENST00000263388 DNAH3Q8TD57 4116 aa7.65□□□□□ -1.19
NOTCH3-201ENST00000263388 KRTAP12-3P60328 96 aa7.64□□□□□ -1.19
NOTCH3-201ENST00000263388 DNAH7Q8WXX0 4024 aa7.56□□□□□ -1.2
NOTCH3-201ENST00000263388 DNAH2Q9P225 4427 aa7.55□□□□□ -1.2
NOTCH3-201ENST00000263388 CMYA5Q8N3K9 4069 aa7.55□□□□□ -1.2
NOTCH3-201ENST00000263388 FRAS1Q86XX4 4008 aa7.53□□□□□ -1.2
NOTCH3-201ENST00000263388 KMT2AQ03164 3969 aa7.52□□□□□ -1.21
NOTCH3-201ENST00000263388 VPS13BQ7Z7G8 4022 aa7.5□□□□□ -1.21
NOTCH3-201ENST00000263388 DNAH1Q9P2D7 4330 aa7.49□□□□□ -1.21
NOTCH3-201ENST00000263388 HECTD4Q9Y4D8 3996 aa7.48□□□□□ -1.21
NOTCH3-201ENST00000263388 ANK2Q01484 3957 aa7.45□□□□□ -1.22
NOTCH3-201ENST00000263388 LCE3AQ5TA76 89 aa7.45□□□□□ -1.22
NOTCH3-201ENST00000263388 KRTAP10-4P60372 401 aaPredicted RBP7.43□□□□□ -1.22
NOTCH3-201ENST00000263388 KRTAP10-5P60370 271 aa7.34□□□□□ -1.23
NOTCH3-201ENST00000263388 KRTAP4-5Q9BYR2 181 aa7.24□□□□□ -1.25
NOTCH3-201ENST00000263388 KRTAP8-1Q8IUC2 63 aa7.17□□□□□ -1.26
NOTCH3-201ENST00000263388 LORP23490 312 aaPredicted RBP7.15□□□□□ -1.26
NOTCH3-201ENST00000263388 DNAH6Q9C0G6 4158 aa7.13□□□□□ -1.27
NOTCH3-201ENST00000263388 DNAH9Q9NYC9 4486 aa7.11□□□□□ -1.27
NOTCH3-201ENST00000263388 DNAH10Q8IVF4 4471 aa7.03□□□□□ -1.28
NOTCH3-201ENST00000263388 PRKDCP78527 4128 aaKnown RBP7.03□□□□□ -1.28
NOTCH3-201ENST00000263388 FAT2Q9NYQ8 4349 aa6.97□□□□□ -1.29
NOTCH3-201ENST00000263388 SPRR2GQ9BYE4 73 aa6.88□□□□□ -1.31
NOTCH3-201ENST00000263388 DYNC2H1Q8NCM8 4307 aaKnown RBP6.86□□□□□ -1.31
NOTCH3-201ENST00000263388 KRTAP10-7P60409 375 aaPredicted RBP6.77□□□□□ -1.33
NOTCH3-201ENST00000263388 MT1HP80294 61 aa6.77□□□□□ -1.33
NOTCH3-201ENST00000263388 DNAH11Q96DT5 4516 aa6.76□□□□□ -1.33
NOTCH3-201ENST00000263388 VPS13DQ5THJ4 4388 aa6.76□□□□□ -1.33
NOTCH3-201ENST00000263388 DNAH8Q96JB1 4490 aa6.75□□□□□ -1.33
NOTCH3-201ENST00000263388 KRTAP4-1Q9BYQ7 146 aa6.7□□□□□ -1.34
NOTCH3-201ENST00000263388 KRTAP19-4Q3LI73 84 aa6.7□□□□□ -1.34
NOTCH3-201ENST00000263388 LCE3CQ5T5A8 94 aa6.7□□□□□ -1.34
NOTCH3-201ENST00000263388 STARD9Q9P2P6 4700 aa6.7□□□□□ -1.34
NOTCH3-201ENST00000263388 FLGP20930 4061 aaPredicted RBP6.68□□□□□ -1.34
NOTCH3-201ENST00000263388 PLECQ15149 4684 aaKnown RBP6.68□□□□□ -1.34
NOTCH3-201ENST00000263388 KRTAP19-5Q3LI72 72 aa6.65□□□□□ -1.35
NOTCH3-201ENST00000263388 MT2AP02795 61 aa6.64□□□□□ -1.35
NOTCH3-201ENST00000263388 DNAH17Q9UFH2 4485 aa6.58□□□□□ -1.36
NOTCH3-201ENST00000263388 SPRR2FQ96RM1 72 aa6.57□□□□□ -1.36
NOTCH3-201ENST00000263388 DNAH5Q8TE73 4624 aa6.56□□□□□ -1.36
NOTCH3-201ENST00000263388 MT1FP04733 61 aa6.49□□□□□ -1.37
NOTCH3-201ENST00000263388 PKHD1P08F94 4074 aa6.44□□□□□ -1.38
NOTCH3-201ENST00000263388 LRP1BQ9NZR2 4599 aa6.39□□□□□ -1.39
NOTCH3-201ENST00000263388 PKHD1L1Q86WI1 4243 aa6.34□□□□□ -1.39
NOTCH3-201ENST00000263388 LCE3BQ5TA77 95 aa6.22□□□□□ -1.41
NOTCH3-201ENST00000263388 KRTAP19-8Q3LI54 63 aa6.22□□□□□ -1.41
NOTCH3-201ENST00000263388 KRTAP12-4P60329 112 aa6.18□□□□□ -1.42
NOTCH3-201ENST00000263388 FAT1Q14517 4588 aa6.16□□□□□ -1.42
NOTCH3-201ENST00000263388 KRTAP19-1Q8IUB9 90 aa6.15□□□□□ -1.42
NOTCH3-201ENST00000263388 SPRR2EP22531 72 aa6.14□□□□□ -1.43
NOTCH3-201ENST00000263388 SPRR2BP35325 72 aa6.14□□□□□ -1.43
NOTCH3-201ENST00000263388 SPRR2AP35326 72 aa6.14□□□□□ -1.43
NOTCH3-201ENST00000263388 APOBP04114 4563 aaKnown RBP6.11□□□□□ -1.43
NOTCH3-201ENST00000263388 MT1XP80297 61 aa6.1□□□□□ -1.43
NOTCH3-201ENST00000263388 PKD1P98161 4303 aa6.09□□□□□ -1.44
NOTCH3-201ENST00000263388 SACSQ9NZJ4 4579 aa6.05□□□□□ -1.44
NOTCH3-201ENST00000263388 LCE2BO14633 110 aa6.02□□□□□ -1.45
NOTCH3-201ENST00000263388 LRP1Q07954 4544 aaKnown RBP6.02□□□□□ -1.45
NOTCH3-201ENST00000263388 TNXBP22105 4242 aa6□□□□□ -1.45
NOTCH3-201ENST00000263388 FAT3Q8TDW7 4589 aa5.99□□□□□ -1.45
NOTCH3-201ENST00000263388 MT1GP13640 62 aa5.99□□□□□ -1.45
NOTCH3-201ENST00000263388 DYNC1H1Q14204 4646 aaKnown RBP5.98□□□□□ -1.45
NOTCH3-201ENST00000263388 SPRR5A0A1B0GTR4 108 aa5.98□□□□□ -1.45
NOTCH3-201ENST00000263388 MYCBP2O75592 4640 aa5.96□□□□□ -1.45
NOTCH3-201ENST00000263388 SPRR2DP22532 72 aa5.96□□□□□ -1.46
NOTCH3-201ENST00000263388 LCE3DQ9BYE3 92 aa5.95□□□□□ -1.46
NOTCH3-201ENST00000263388 KRTAP9-8Q9BYQ0 159 aa5.87□□□□□ -1.47
NOTCH3-201ENST00000263388 MT1BP07438 61 aa5.86□□□□□ -1.47
NOTCH3-201ENST00000263388 HSPG2P98160 4391 aa5.85□□□□□ -1.47
NOTCH3-201ENST00000263388 LCE3EQ5T5B0 92 aa5.84□□□□□ -1.47
NOTCH3-201ENST00000263388 KRTAP4-8A0A0G2JLE6 195 aa5.74□□□□□ -1.49
NOTCH3-201ENST00000263388 KRTAP4-8Q9BYQ9 185 aa5.74□□□□□ -1.49
NOTCH3-201ENST00000263388 MT3P25713 68 aa5.71□□□□□ -1.5
NOTCH3-201ENST00000263388 KRTAP9-3Q9BYQ3 159 aa5.71□□□□□ -1.5
NOTCH3-201ENST00000263388 MT1LQ93083 61 aa5.69□□□□□ -1.5
NOTCH3-201ENST00000263388 DNHD1Q96M86 4753 aa5.66□□□□□ -1.5
NOTCH3-201ENST00000263388 KRTAP19-3Q7Z4W3 81 aa5.66□□□□□ -1.5
NOTCH3-201ENST00000263388 LPAP08519 4548 aa5.62□□□□□ -1.51
NOTCH3-201ENST00000263388 LCE2CQ5TA81 110 aa5.59□□□□□ -1.52
NOTCH3-201ENST00000263388 KRTAP17-1Q9BYP8 105 aa5.58□□□□□ -1.52
NOTCH3-201ENST00000263388 LRP2P98164 4655 aa5.53□□□□□ -1.52
NOTCH3-201ENST00000263388 RYR1P21817 5038 aa5.53□□□□□ -1.52
NOTCH3-201ENST00000263388 MT1EP04732 61 aa5.51□□□□□ -1.53
NOTCH3-201ENST00000263388 PRM1P04553 51 aa5.46□□□□□ -1.54
NOTCH3-201ENST00000263388 LCE2DQ5TA82 110 aaPredicted RBP5.44□□□□□ -1.54
NOTCH3-201ENST00000263388 KRTAP4-7Q9BYR0 210 aa5.39□□□□□ -1.55
NOTCH3-201ENST00000263388 RYR3Q15413 4870 aa5.36□□□□□ -1.55
NOTCH3-201ENST00000263388 MT1MQ8N339 61 aa5.34□□□□□ -1.55
NOTCH3-201ENST00000263388 MT4P47944 62 aa5.25□□□□□ -1.57
NOTCH3-201ENST00000263388 KRTAP19-2Q3LHN2 52 aa5.24□□□□□ -1.57
NOTCH3-201ENST00000263388 KRTAP19-6Q3LI70 58 aa5.2□□□□□ -1.58
NOTCH3-201ENST00000263388 LOC100996750A0A140TA64 210 aa5.18□□□□□ -1.58
NOTCH3-201ENST00000263388 LCE1DQ5T752 114 aa5.16□□□□□ -1.58
NOTCH3-201ENST00000263388 LCE1BQ5T7P3 118 aa5.16□□□□□ -1.58
NOTCH3-201ENST00000263388 MUC17Q685J3 4493 aa5.15□□□□□ -1.58
NOTCH3-201ENST00000263388 KMT2CQ8NEZ4 4911 aaKnown RBP5.06□□□□□ -1.6
NOTCH3-201ENST00000263388 KRTAP4-3Q9BYR4 195 aa5.04□□□□□ -1.6
NOTCH3-201ENST00000263388 HYDINQ4G0P3 5121 aa5.01□□□□□ -1.61
NOTCH3-201ENST00000263388 KRTAP2-3P0C7H8 128 aa5□□□□□ -1.61
NOTCH3-201ENST00000263388 KRTAP2-4Q9BYR9 128 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms