RNA–Protein interactions for RNA: ENST00000243326.9

RIF1-201, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RIF1, Length 15,003 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-201ENST00000243326 PRO2289Q9P1D8 64 aa3.46□□□□□ -1.86
RIF1-201ENST00000243326 DNAH6Q9C0G6 4158 aa3.45□□□□□ -1.86
RIF1-201ENST00000243326 MUC3AQ02505 3323 aa3.42□□□□□ -1.86
RIF1-201ENST00000243326 LORP23490 312 aaPredicted RBP3.4□□□□□ -1.87
RIF1-201ENST00000243326 DNAH2Q9P225 4427 aa3.38□□□□□ -1.87
RIF1-201ENST00000243326 KRTAP4-5Q9BYR2 181 aa3.34□□□□□ -1.88
RIF1-201ENST00000243326 LCE3AQ5TA76 89 aa3.33□□□□□ -1.88
RIF1-201ENST00000243326 INE1O15225 51 aa3.31□□□□□ -1.88
RIF1-201ENST00000243326 HUWE1Q7Z6Z7 4374 aaKnown RBP3.3□□□□□ -1.88
RIF1-201ENST00000243326 PRKDCP78527 4128 aaKnown RBP3.28□□□□□ -1.88
RIF1-201ENST00000243326 MT1HL1P0DM35 61 aa3.28□□□□□ -1.88
RIF1-201ENST00000243326 VPS13BQ7Z7G8 4022 aa3.26□□□□□ -1.89
RIF1-201ENST00000243326 KRTAP10-12P60413 245 aa3.26□□□□□ -1.89
RIF1-201ENST00000243326 KRTAP21-3Q3LHN1 58 aa3.24□□□□□ -1.89
RIF1-201ENST00000243326 PKHD1P08F94 4074 aa3.23□□□□□ -1.89
RIF1-201ENST00000243326 KRTAP12-3P60328 96 aa3.21□□□□□ -1.9
RIF1-201ENST00000243326 KRTAP10-4P60372 401 aaPredicted RBP3.18□□□□□ -1.9
RIF1-201ENST00000243326 KRTAP10-5P60370 271 aa3.18□□□□□ -1.9
RIF1-201ENST00000243326 DNAH10Q8IVF4 4471 aa3.16□□□□□ -1.9
RIF1-201ENST00000243326 VPS13DQ5THJ4 4388 aa3.15□□□□□ -1.91
RIF1-201ENST00000243326 KRTAP4-1Q9BYQ7 146 aa3.13□□□□□ -1.91
RIF1-201ENST00000243326 ANK3Q12955 4377 aaKnown RBP3.12□□□□□ -1.91
RIF1-201ENST00000243326 DNAH11Q96DT5 4516 aa3.04□□□□□ -1.92
RIF1-201ENST00000243326 DNAH17Q9UFH2 4485 aa3.02□□□□□ -1.93
RIF1-201ENST00000243326 KRTAP23-1A1A580 65 aa3.02□□□□□ -1.93
RIF1-201ENST00000243326 DYNC2H1Q8NCM8 4307 aaKnown RBP2.95□□□□□ -1.94
RIF1-201ENST00000243326 KRTAP19-5Q3LI72 72 aa2.94□□□□□ -1.94
RIF1-201ENST00000243326 KRTAP8-1Q8IUC2 63 aa2.93□□□□□ -1.94
RIF1-201ENST00000243326 PKHD1L1Q86WI1 4243 aa2.91□□□□□ -1.94
RIF1-201ENST00000243326 MT2AP02795 61 aa2.89□□□□□ -1.95
RIF1-201ENST00000243326 MT1FP04733 61 aa2.88□□□□□ -1.95
RIF1-201ENST00000243326 MT1HP80294 61 aa2.88□□□□□ -1.95
RIF1-201ENST00000243326 KRTAP17-1Q9BYP8 105 aa2.88□□□□□ -1.95
RIF1-201ENST00000243326 DYNC1H1Q14204 4646 aaKnown RBP2.86□□□□□ -1.95
RIF1-201ENST00000243326 KRTAP10-7P60409 375 aaPredicted RBP2.85□□□□□ -1.95
RIF1-201ENST00000243326 LCE3CQ5T5A8 94 aa2.83□□□□□ -1.96
RIF1-201ENST00000243326 LCE3BQ5TA77 95 aa2.8□□□□□ -1.96
RIF1-201ENST00000243326 TNXBP22105 4242 aa2.79□□□□□ -1.96
RIF1-201ENST00000243326 DNAH8Q96JB1 4490 aa2.78□□□□□ -1.96
RIF1-201ENST00000243326 PKD1P98161 4303 aa2.77□□□□□ -1.97
RIF1-201ENST00000243326 SACSQ9NZJ4 4579 aa2.76□□□□□ -1.97
RIF1-201ENST00000243326 SPRR2FQ96RM1 72 aa2.76□□□□□ -1.97
RIF1-201ENST00000243326 FAT2Q9NYQ8 4349 aa2.75□□□□□ -1.97
RIF1-201ENST00000243326 SPRR2GQ9BYE4 73 aa2.75□□□□□ -1.97
RIF1-201ENST00000243326 DNAH9Q9NYC9 4486 aa2.75□□□□□ -1.97
RIF1-201ENST00000243326 MT1GP13640 62 aa2.73□□□□□ -1.97
RIF1-201ENST00000243326 LRP1Q07954 4544 aaKnown RBP2.72□□□□□ -1.97
RIF1-201ENST00000243326 KRTAP4-7Q9BYR0 210 aa2.7□□□□□ -1.98
RIF1-201ENST00000243326 PLECQ15149 4684 aaKnown RBP2.7□□□□□ -1.98
RIF1-201ENST00000243326 KRTAP4-8A0A0G2JLE6 195 aa2.69□□□□□ -1.98
RIF1-201ENST00000243326 KRTAP4-8Q9BYQ9 185 aa2.69□□□□□ -1.98
RIF1-201ENST00000243326 FAT3Q8TDW7 4589 aa2.68□□□□□ -1.98
RIF1-201ENST00000243326 HSPG2P98160 4391 aa2.68□□□□□ -1.98
RIF1-201ENST00000243326 KRTAP12-4P60329 112 aa2.68□□□□□ -1.98
RIF1-201ENST00000243326 KRTAP19-1Q8IUB9 90 aa2.67□□□□□ -1.98
RIF1-201ENST00000243326 DNAH5Q8TE73 4624 aa2.66□□□□□ -1.98
RIF1-201ENST00000243326 FAT1Q14517 4588 aa2.65□□□□□ -1.99
RIF1-201ENST00000243326 MT1XP80297 61 aa2.65□□□□□ -1.99
RIF1-201ENST00000243326 APOBP04114 4563 aaKnown RBP2.64□□□□□ -1.99
RIF1-201ENST00000243326 MYCBP2O75592 4640 aa2.63□□□□□ -1.99
RIF1-201ENST00000243326 RYR1P21817 5038 aa2.62□□□□□ -1.99
RIF1-201ENST00000243326 MT1BP07438 61 aa2.58□□□□□ -2
RIF1-201ENST00000243326 STARD9Q9P2P6 4700 aa2.58□□□□□ -2
RIF1-201ENST00000243326 LOC100996750A0A140TA64 210 aa2.56□□□□□ -2
RIF1-201ENST00000243326 SPRR2EP22531 72 aa2.56□□□□□ -2
RIF1-201ENST00000243326 SPRR2BP35325 72 aa2.56□□□□□ -2
RIF1-201ENST00000243326 SPRR2AP35326 72 aa2.56□□□□□ -2
RIF1-201ENST00000243326 SPRR5A0A1B0GTR4 108 aa2.54□□□□□ -2
RIF1-201ENST00000243326 KRTAP4-3Q9BYR4 195 aa2.54□□□□□ -2
RIF1-201ENST00000243326 KRTAP19-8Q3LI54 63 aa2.5□□□□□ -2.01
RIF1-201ENST00000243326 LPAP08519 4548 aa2.5□□□□□ -2.01
RIF1-201ENST00000243326 KRTAP9-8Q9BYQ0 159 aa2.49□□□□□ -2.01
RIF1-201ENST00000243326 LRP1BQ9NZR2 4599 aa2.48□□□□□ -2.01
RIF1-201ENST00000243326 LCE2CQ5TA81 110 aa2.48□□□□□ -2.01
RIF1-201ENST00000243326 KRTAP4-9Q9BYQ8 210 aa2.47□□□□□ -2.01
RIF1-201ENST00000243326 PRM1P04553 51 aa2.46□□□□□ -2.02
RIF1-201ENST00000243326 LCE3DQ9BYE3 92 aa2.45□□□□□ -2.02
RIF1-201ENST00000243326 HYDINQ4G0P3 5121 aa2.44□□□□□ -2.02
RIF1-201ENST00000243326 SPRR2DP22532 72 aa2.44□□□□□ -2.02
RIF1-201ENST00000243326 KRTAP9-3Q9BYQ3 159 aa2.42□□□□□ -2.02
RIF1-201ENST00000243326 MUC17Q685J3 4493 aa2.42□□□□□ -2.02
RIF1-201ENST00000243326 BIRC6Q9NR09 4857 aa2.41□□□□□ -2.02
RIF1-201ENST00000243326 KRTAP19-4Q3LI73 84 aa2.41□□□□□ -2.02
RIF1-201ENST00000243326 MT1LQ93083 61 aa2.41□□□□□ -2.02
RIF1-201ENST00000243326 LCE2BO14633 110 aa2.39□□□□□ -2.03
RIF1-201ENST00000243326 LCE3EQ5T5B0 92 aa2.39□□□□□ -2.03
RIF1-201ENST00000243326 MT1EP04732 61 aa2.35□□□□□ -2.03
RIF1-201ENST00000243326 MT4P47944 62 aa2.35□□□□□ -2.03
RIF1-201ENST00000243326 PCLOQ9Y6V0 5065 aa2.35□□□□□ -2.03
RIF1-201ENST00000243326 RYR3Q15413 4870 aa2.33□□□□□ -2.04
RIF1-201ENST00000243326 MT3P25713 68 aa2.32□□□□□ -2.04
RIF1-201ENST00000243326 KRTAP19-2Q3LHN2 52 aa2.32□□□□□ -2.04
RIF1-201ENST00000243326 DNHD1Q96M86 4753 aa2.3□□□□□ -2.04
RIF1-201ENST00000243326 KRTAP19-3Q7Z4W3 81 aa2.29□□□□□ -2.04
RIF1-201ENST00000243326 LCE1BQ5T7P3 118 aa2.29□□□□□ -2.04
RIF1-201ENST00000243326 MT1MQ8N339 61 aa2.29□□□□□ -2.04
RIF1-201ENST00000243326 KRTAP9-6A8MVA2 160 aa2.24□□□□□ -2.05
RIF1-201ENST00000243326 LCE1DQ5T752 114 aa2.24□□□□□ -2.05
RIF1-201ENST00000243326 LCE2DQ5TA82 110 aaPredicted RBP2.21□□□□□ -2.06
RIF1-201ENST00000243326 LRP2P98164 4655 aa2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms