RNA–Protein interactions for RNA: ENST00000237186.10

UBE3D-201, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-201ENST00000237186 MT1HL1P0DM35 61 aa8.47□□□□□ -1.05
UBE3D-201ENST00000237186 SEC61GP60059 68 aa8.47□□□□□ -1.05
UBE3D-201ENST00000237186 MIR22HGQ0VDD5 57 aa8.47□□□□□ -1.05
UBE3D-201ENST00000237186 DMBT1Q9UGM3 2413 aaPredicted RBP8.46□□□□□ -1.06
UBE3D-201ENST00000237186 XP32Q5T750 250 aa8.45□□□□□ -1.06
UBE3D-201ENST00000237186 KTN1-AS1Q86SY8 53 aa8.44□□□□□ -1.06
UBE3D-201ENST00000237186 KRTAP4-5Q9BYR2 181 aa8.43□□□□□ -1.06
UBE3D-201ENST00000237186 BIRC6Q9NR09 4857 aa8.36□□□□□ -1.07
UBE3D-201ENST00000237186 ABCA13Q86UQ4 5058 aa8.3□□□□□ -1.08
UBE3D-201ENST00000237186 HERC2O95714 4834 aa8.29□□□□□ -1.08
UBE3D-201ENST00000237186 A0A1B0GU33 70 aa8.28□□□□□ -1.08
UBE3D-201ENST00000237186 TPRXLQ17RH7 258 aa8.27□□□□□ -1.09
UBE3D-201ENST00000237186 H1FX-AS1Q4G0G2 97 aa8.26□□□□□ -1.09
UBE3D-201ENST00000237186 H0YAA0 97 aa8.26□□□□□ -1.09
UBE3D-201ENST00000237186 S4R3F8 94 aa8.17□□□□□ -1.1
UBE3D-201ENST00000237186 LRP2P98164 4655 aa8.16□□□□□ -1.1
UBE3D-201ENST00000237186 J3QL48 77 aa8.16□□□□□ -1.1
UBE3D-201ENST00000237186 LCE2BO14633 110 aa8.15□□□□□ -1.11
UBE3D-201ENST00000237186 LPAP08519 4548 aa8.15□□□□□ -1.11
UBE3D-201ENST00000237186 KRTAP10-6P60371 365 aaPredicted RBP8.14□□□□□ -1.11
UBE3D-201ENST00000237186 RBM12B-AS1Q9P1G2 102 aa8.12□□□□□ -1.11
UBE3D-201ENST00000237186 ADM2Q7Z4H4 148 aa8.06□□□□□ -1.12
UBE3D-201ENST00000237186 PRAC1Q96KF2 57 aa8.04□□□□□ -1.12
UBE3D-201ENST00000237186 K7ERS5 55 aa7.96□□□□□ -1.13
UBE3D-201ENST00000237186 KRTAP13-4Q3LI77 160 aa7.96□□□□□ -1.13
UBE3D-201ENST00000237186 CSAG1Q6PB30 78 aa7.96□□□□□ -1.14
UBE3D-201ENST00000237186 P0C880 135 aa7.95□□□□□ -1.14
UBE3D-201ENST00000237186 SEC61BP60468 96 aaKnown RBP7.94□□□□□ -1.14
UBE3D-201ENST00000237186 PCLOQ9Y6V0 5065 aa7.93□□□□□ -1.14
UBE3D-201ENST00000237186 MUC17Q685J3 4493 aa7.91□□□□□ -1.14
UBE3D-201ENST00000237186 A0A0D9SG42 100 aa7.82□□□□□ -1.16
UBE3D-201ENST00000237186 HERC1Q15751 4861 aa7.81□□□□□ -1.16
UBE3D-201ENST00000237186 M0QZ58 72 aa7.79□□□□□ -1.16
UBE3D-201ENST00000237186 KRTAP4-1Q9BYQ7 146 aa7.78□□□□□ -1.16
UBE3D-201ENST00000237186 LINC01554Q52M75 96 aa7.77□□□□□ -1.17
UBE3D-201ENST00000237186 ROMO1P60602 79 aa7.76□□□□□ -1.17
UBE3D-201ENST00000237186 HMCN2Q8NDA2 5059 aa7.75□□□□□ -1.17
UBE3D-201ENST00000237186 KRTAP25-1Q3LHN0 102 aa7.74□□□□□ -1.17
UBE3D-201ENST00000237186 LCE2AQ5TA79 106 aaPredicted RBP7.72□□□□□ -1.17
UBE3D-201ENST00000237186 KRTAP19-2Q3LHN2 52 aa7.7□□□□□ -1.18
UBE3D-201ENST00000237186 KRTAP12-2P59991 146 aa7.69□□□□□ -1.18
UBE3D-201ENST00000237186 KRTAP12-1P59990 96 aa7.68□□□□□ -1.18
UBE3D-201ENST00000237186 SPINT4Q6UDR6 99 aa7.6□□□□□ -1.19
UBE3D-201ENST00000237186 FLGP20930 4061 aaPredicted RBP7.57□□□□□ -1.2
UBE3D-201ENST00000237186 R4GN34 69 aa7.57□□□□□ -1.2
UBE3D-201ENST00000237186 CRIPTQ9P021 101 aa7.55□□□□□ -1.2
UBE3D-201ENST00000237186 MUC2Q02817 5179 aa7.52□□□□□ -1.21
UBE3D-201ENST00000237186 LORP23490 312 aaPredicted RBP7.49□□□□□ -1.21
UBE3D-201ENST00000237186 LCE2CQ5TA81 110 aa7.44□□□□□ -1.22
UBE3D-201ENST00000237186 UBR4Q5T4S7 5183 aa7.39□□□□□ -1.23
UBE3D-201ENST00000237186 C10orf95Q9H7T3 257 aa7.37□□□□□ -1.23
UBE3D-201ENST00000237186 LOC100996750A0A140TA64 210 aa7.36□□□□□ -1.23
UBE3D-201ENST00000237186 KRTAP4-6Q9BYQ5 205 aa7.36□□□□□ -1.23
UBE3D-201ENST00000237186 RNF213Q63HN8 5207 aa7.35□□□□□ -1.23
UBE3D-201ENST00000237186 FAT4Q6V0I7 4981 aa7.21□□□□□ -1.25
UBE3D-201ENST00000237186 CAMK2N1Q7Z7J9 78 aa7.13□□□□□ -1.27
UBE3D-201ENST00000237186 MT1HP80294 61 aa7.12□□□□□ -1.27
UBE3D-201ENST00000237186 M0R2T5 61 aa7.09□□□□□ -1.27
UBE3D-201ENST00000237186 SPRR2GQ9BYE4 73 aa7.07□□□□□ -1.28
UBE3D-201ENST00000237186 KRTAP15-1Q3LI76 137 aa7.02□□□□□ -1.29
UBE3D-201ENST00000237186 PP632Q6XCG6 107 aa7□□□□□ -1.29
UBE3D-201ENST00000237186 KRTAP19-1Q8IUB9 90 aa7□□□□□ -1.29
UBE3D-201ENST00000237186 MT2AP02795 61 aa6.93□□□□□ -1.3
UBE3D-201ENST00000237186 KRTAP9-8Q9BYQ0 159 aa6.92□□□□□ -1.3
UBE3D-201ENST00000237186 MT1FP04733 61 aa6.9□□□□□ -1.3
UBE3D-201ENST00000237186 PLAC4Q8WY50 150 aa6.9□□□□□ -1.3
UBE3D-201ENST00000237186 KRTAP23-1A1A580 65 aa6.9□□□□□ -1.31
UBE3D-201ENST00000237186 TNP1P09430 55 aa6.9□□□□□ -1.31
UBE3D-201ENST00000237186 KRTAP10-10P60014 251 aa6.86□□□□□ -1.31
UBE3D-201ENST00000237186 KRTAP19-8Q3LI54 63 aa6.8□□□□□ -1.32
UBE3D-201ENST00000237186 KRTAP4-8Q9BYQ9 185 aa6.7□□□□□ -1.34
UBE3D-201ENST00000237186 H3BS24 57 aa6.69□□□□□ -1.34
UBE3D-201ENST00000237186 NDUFAF8A1L188 74 aa6.66□□□□□ -1.34
UBE3D-201ENST00000237186 MT1BP07438 61 aa6.66□□□□□ -1.34
UBE3D-201ENST00000237186 KRTAP9-3Q9BYQ3 159 aa6.65□□□□□ -1.34
UBE3D-201ENST00000237186 KRTAP9-2Q9BYQ4 174 aa6.58□□□□□ -1.36
UBE3D-201ENST00000237186 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.57□□□□□ -1.36
UBE3D-201ENST00000237186 KRTAP10-5P60370 271 aa6.57□□□□□ -1.36
UBE3D-201ENST00000237186 MT1XP80297 61 aa6.56□□□□□ -1.36
UBE3D-201ENST00000237186 KRTAP9-6A0A140TA67 174 aa6.53□□□□□ -1.36
UBE3D-201ENST00000237186 LCE3AQ5TA76 89 aa6.52□□□□□ -1.37
UBE3D-201ENST00000237186 SPRR5A0A1B0GTR4 108 aa6.46□□□□□ -1.38
UBE3D-201ENST00000237186 KRTAP8-1Q8IUC2 63 aa6.45□□□□□ -1.38
UBE3D-201ENST00000237186 LUZP6Q538Z0 58 aa6.42□□□□□ -1.38
UBE3D-201ENST00000237186 LCE3BQ5TA77 95 aa6.4□□□□□ -1.39
UBE3D-201ENST00000237186 PRO2289Q9P1D8 64 aa6.39□□□□□ -1.39
UBE3D-201ENST00000237186 KRTAP10-12P60413 245 aa6.36□□□□□ -1.39
UBE3D-201ENST00000237186 KRTAP4-12Q9BQ66 201 aa6.35□□□□□ -1.39
UBE3D-201ENST00000237186 KRTAP10-7P60409 375 aaPredicted RBP6.32□□□□□ -1.4
UBE3D-201ENST00000237186 USH2AO75445 5202 aa6.26□□□□□ -1.41
UBE3D-201ENST00000237186 KRTAP12-3P60328 96 aa6.26□□□□□ -1.41
UBE3D-201ENST00000237186 KRTAP9-9Q9BYP9 154 aa6.24□□□□□ -1.41
UBE3D-201ENST00000237186 KRTAP9-4Q9BYQ2 154 aa6.24□□□□□ -1.41
UBE3D-201ENST00000237186 KRTAP4-8A0A0G2JLE6 195 aa6.17□□□□□ -1.42
UBE3D-201ENST00000237186 SSPOA2VEC9 5147 aa6.04□□□□□ -1.44
UBE3D-201ENST00000237186 KRTAP19-5Q3LI72 72 aa6.04□□□□□ -1.44
UBE3D-201ENST00000237186 LCE1DQ5T752 114 aa5.98□□□□□ -1.45
UBE3D-201ENST00000237186 KRTAP4-7Q9BYR0 210 aa5.98□□□□□ -1.45
UBE3D-201ENST00000237186 KRTAP19-6Q3LI70 58 aa5.96□□□□□ -1.45
UBE3D-201ENST00000237186 A0A0A0MQY5 61 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms