RNA–Protein interactions for RNA: ENST00000230085.12

SNX3-201, Transcript of sorting nexin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX3, Length 1,755 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-201ENST00000230085 PRAC1Q96KF2 57 aa11.34□□□□□ -0.59
SNX3-201ENST00000230085 TYMSOSQ8TAI1 123 aa11.33□□□□□ -0.6
SNX3-201ENST00000230085 LINC01554Q52M75 96 aa11.3□□□□□ -0.6
SNX3-201ENST00000230085 ADM2Q7Z4H4 148 aa11.29□□□□□ -0.6
SNX3-201ENST00000230085 HERC1Q15751 4861 aa11.27□□□□□ -0.6
SNX3-201ENST00000230085 C4orf48Q5BLP8 95 aa11.26□□□□□ -0.61
SNX3-201ENST00000230085 LINC00304Q8N9R0 145 aa11.18□□□□□ -0.62
SNX3-201ENST00000230085 A8MUU9 505 aa11.11□□□□□ -0.63
SNX3-201ENST00000230085 C20orf166-AS1Q96NR2 134 aa11.11□□□□□ -0.63
SNX3-201ENST00000230085 CSAG1Q6PB30 78 aa11.07□□□□□ -0.64
SNX3-201ENST00000230085 H0YAA0 97 aa11.05□□□□□ -0.64
SNX3-201ENST00000230085 KRTAP3-1Q9BYR8 98 aa10.97□□□□□ -0.65
SNX3-201ENST00000230085 A0A1B0GU33 70 aa10.96□□□□□ -0.65
SNX3-201ENST00000230085 H1FX-AS1Q4G0G2 97 aa10.95□□□□□ -0.66
SNX3-201ENST00000230085 HMCN2Q8NDA2 5059 aa10.95□□□□□ -0.66
SNX3-201ENST00000230085 KRTAP3-3Q9BYR6 98 aa10.9□□□□□ -0.67
SNX3-201ENST00000230085 KRTAP3-2Q9BYR7 98 aa10.9□□□□□ -0.67
SNX3-201ENST00000230085 LPAP08519 4548 aa10.87□□□□□ -0.67
SNX3-201ENST00000230085 KRTAP25-1Q3LHN0 102 aa10.87□□□□□ -0.67
SNX3-201ENST00000230085 COX6B2Q6YFQ2 88 aa10.81□□□□□ -0.68
SNX3-201ENST00000230085 LRP2P98164 4655 aa10.8□□□□□ -0.68
SNX3-201ENST00000230085 K7ERS5 55 aa10.74□□□□□ -0.69
SNX3-201ENST00000230085 C9orf92A6NGG3 77 aa10.73□□□□□ -0.69
SNX3-201ENST00000230085 TPRXLQ17RH7 258 aa10.7□□□□□ -0.7
SNX3-201ENST00000230085 ROMO1P60602 79 aa10.61□□□□□ -0.71
SNX3-201ENST00000230085 UBR4Q5T4S7 5183 aa10.6□□□□□ -0.71
SNX3-201ENST00000230085 KRTAP10-6P60371 365 aaPredicted RBP10.55□□□□□ -0.72
SNX3-201ENST00000230085 RPL37P61927 97 aaKnown RBP10.52□□□□□ -0.72
SNX3-201ENST00000230085 XP32Q5T750 250 aa10.52□□□□□ -0.72
SNX3-201ENST00000230085 H3BS24 57 aa10.52□□□□□ -0.73
SNX3-201ENST00000230085 RNF213Q63HN8 5207 aa10.38□□□□□ -0.75
SNX3-201ENST00000230085 MUC17Q685J3 4493 aa10.38□□□□□ -0.75
SNX3-201ENST00000230085 KRTAP13-4Q3LI77 160 aa10.37□□□□□ -0.75
SNX3-201ENST00000230085 MUC2Q02817 5179 aa10.37□□□□□ -0.75
SNX3-201ENST00000230085 SEC61BP60468 96 aaKnown RBP10.34□□□□□ -0.75
SNX3-201ENST00000230085 S4R3F8 94 aa10.34□□□□□ -0.75
SNX3-201ENST00000230085 CRIPTQ9P021 101 aa10.24□□□□□ -0.77
SNX3-201ENST00000230085 KRTAP4-1Q9BYQ7 146 aa10.23□□□□□ -0.77
SNX3-201ENST00000230085 P0C880 135 aa10.21□□□□□ -0.77
SNX3-201ENST00000230085 A0A0D9SG42 100 aa10.16□□□□□ -0.78
SNX3-201ENST00000230085 M0QZ58 72 aa10.07□□□□□ -0.8
SNX3-201ENST00000230085 KRTAP12-1P59990 96 aa10.07□□□□□ -0.8
SNX3-201ENST00000230085 KRTAP12-2P59991 146 aa10.06□□□□□ -0.8
SNX3-201ENST00000230085 KRTAP15-1Q3LI76 137 aa10.01□□□□□ -0.81
SNX3-201ENST00000230085 SPINT4Q6UDR6 99 aa10.01□□□□□ -0.81
SNX3-201ENST00000230085 FAT4Q6V0I7 4981 aa9.95□□□□□ -0.82
SNX3-201ENST00000230085 C10orf95Q9H7T3 257 aa9.95□□□□□ -0.82
SNX3-201ENST00000230085 KRTAP19-2Q3LHN2 52 aa9.9□□□□□ -0.82
SNX3-201ENST00000230085 LCE2CQ5TA81 110 aa9.84□□□□□ -0.83
SNX3-201ENST00000230085 LCE2AQ5TA79 106 aaPredicted RBP9.73□□□□□ -0.85
SNX3-201ENST00000230085 FLGP20930 4061 aaPredicted RBP9.69□□□□□ -0.86
SNX3-201ENST00000230085 MT1HP80294 61 aa9.68□□□□□ -0.86
SNX3-201ENST00000230085 NDUFAF8A1L188 74 aa9.67□□□□□ -0.86
SNX3-201ENST00000230085 R4GN34 69 aa9.55□□□□□ -0.88
SNX3-201ENST00000230085 M0R2T5 61 aa9.54□□□□□ -0.88
SNX3-201ENST00000230085 LCE2BO14633 110 aa9.47□□□□□ -0.89
SNX3-201ENST00000230085 PP632Q6XCG6 107 aa9.4□□□□□ -0.9
SNX3-201ENST00000230085 LORP23490 312 aaPredicted RBP9.38□□□□□ -0.91
SNX3-201ENST00000230085 PLAC4Q8WY50 150 aa9.37□□□□□ -0.91
SNX3-201ENST00000230085 KRTAP9-8Q9BYQ0 159 aa9.25□□□□□ -0.93
SNX3-201ENST00000230085 KRTAP23-1A1A580 65 aa9.17□□□□□ -0.94
SNX3-201ENST00000230085 MT2AP02795 61 aa9.14□□□□□ -0.95
SNX3-201ENST00000230085 MT1FP04733 61 aa9.09□□□□□ -0.95
SNX3-201ENST00000230085 KRTAP10-10P60014 251 aa9.06□□□□□ -0.96
SNX3-201ENST00000230085 CAMK2N1Q7Z7J9 78 aa9.06□□□□□ -0.96
SNX3-201ENST00000230085 KRTAP9-2Q9BYQ4 174 aa9.04□□□□□ -0.96
SNX3-201ENST00000230085 LUZP6Q538Z0 58 aa9.01□□□□□ -0.97
SNX3-201ENST00000230085 KRTAP9-3Q9BYQ3 159 aa8.93□□□□□ -0.98
SNX3-201ENST00000230085 SPRR5A0A1B0GTR4 108 aa8.91□□□□□ -0.98
SNX3-201ENST00000230085 TNP1P09430 55 aa8.89□□□□□ -0.99
SNX3-201ENST00000230085 FSIP2Q5CZC0 6907 aa8.85□□□□□ -0.99
SNX3-201ENST00000230085 A0A0A0MQY5 61 aa8.8□□□□□ -1
SNX3-201ENST00000230085 KRTAP19-1Q8IUB9 90 aa8.71□□□□□ -1.01
SNX3-201ENST00000230085 USH2AO75445 5202 aa8.71□□□□□ -1.02
SNX3-201ENST00000230085 SPRR2GQ9BYE4 73 aa8.66□□□□□ -1.02
SNX3-201ENST00000230085 CRCT1Q9UGL9 99 aa8.61□□□□□ -1.03
SNX3-201ENST00000230085 LOC100996750A0A140TA64 210 aa8.57□□□□□ -1.04
SNX3-201ENST00000230085 KRTAP4-6Q9BYQ5 205 aa8.57□□□□□ -1.04
SNX3-201ENST00000230085 KRTAP9-6A0A140TA67 174 aa8.54□□□□□ -1.04
SNX3-201ENST00000230085 SSPOA2VEC9 5147 aa8.54□□□□□ -1.04
SNX3-201ENST00000230085 KRTAP19-8Q3LI54 63 aa8.5□□□□□ -1.05
SNX3-201ENST00000230085 MT1BP07438 61 aa8.47□□□□□ -1.05
SNX3-201ENST00000230085 KRTAP19-6Q3LI70 58 aa8.36□□□□□ -1.07
SNX3-201ENST00000230085 KRTAP8-1Q8IUC2 63 aa8.31□□□□□ -1.08
SNX3-201ENST00000230085 LCE3AQ5TA76 89 aa8.3□□□□□ -1.08
SNX3-201ENST00000230085 FCGBPQ9Y6R7 5405 aaPredicted RBP8.29□□□□□ -1.08
SNX3-201ENST00000230085 KRTAP10-5P60370 271 aa8.15□□□□□ -1.1
SNX3-201ENST00000230085 PRO2289Q9P1D8 64 aa8.09□□□□□ -1.11
SNX3-201ENST00000230085 INE1O15225 51 aa8.08□□□□□ -1.12
SNX3-201ENST00000230085 MT1XP80297 61 aa8.07□□□□□ -1.12
SNX3-201ENST00000230085 MACF1Q9UPN3 7388 aaKnown RBP8.01□□□□□ -1.13
SNX3-201ENST00000230085 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.99□□□□□ -1.13
SNX3-201ENST00000230085 KRTAP12-3P60328 96 aa7.95□□□□□ -1.14
SNX3-201ENST00000230085 KRTAP10-12P60413 245 aa7.93□□□□□ -1.14
SNX3-201ENST00000230085 SYNE2Q8WXH0 6885 aaKnown RBP7.85□□□□□ -1.15
SNX3-201ENST00000230085 KRTAP4-8Q9BYQ9 185 aa7.79□□□□□ -1.16
SNX3-201ENST00000230085 KMT2DO14686 5537 aa7.76□□□□□ -1.17
SNX3-201ENST00000230085 KRTAP9-7A8MTY7 169 aa7.75□□□□□ -1.17
SNX3-201ENST00000230085 KRTAP10-7P60409 375 aaPredicted RBP7.73□□□□□ -1.17
SNX3-201ENST00000230085 KRTAP4-8A0A0G2JLE6 195 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms