RNA–Protein interactions for RNA: ENST00000222402.7

UBE2D4-201, Transcript of ubiquitin conjugating enzyme E2 D4 (putative), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBE2D4, Length 3,974 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4-201ENST00000222402 ROMO1P60602 79 aa7.67□□□□□ -1.18
UBE2D4-201ENST00000222402 PKD1P98161 4303 aa7.65□□□□□ -1.18
UBE2D4-201ENST00000222402 KRTAP25-1Q3LHN0 102 aa7.63□□□□□ -1.19
UBE2D4-201ENST00000222402 P0C880 135 aa7.58□□□□□ -1.2
UBE2D4-201ENST00000222402 SEC61BP60468 96 aaKnown RBP7.57□□□□□ -1.2
UBE2D4-201ENST00000222402 R4GN34 69 aa7.54□□□□□ -1.2
UBE2D4-201ENST00000222402 APOBP04114 4563 aaKnown RBP7.53□□□□□ -1.2
UBE2D4-201ENST00000222402 M0QZ58 72 aa7.52□□□□□ -1.21
UBE2D4-201ENST00000222402 TPRXLQ17RH7 258 aa7.52□□□□□ -1.21
UBE2D4-201ENST00000222402 MYCBP2O75592 4640 aa7.51□□□□□ -1.21
UBE2D4-201ENST00000222402 LRP1Q07954 4544 aaKnown RBP7.5□□□□□ -1.21
UBE2D4-201ENST00000222402 MT1HL1P0DM35 61 aa7.49□□□□□ -1.21
UBE2D4-201ENST00000222402 KRTAP10-6P60371 365 aaPredicted RBP7.48□□□□□ -1.21
UBE2D4-201ENST00000222402 KRTAP3-3Q9BYR6 98 aa7.46□□□□□ -1.21
UBE2D4-201ENST00000222402 KRTAP13-4Q3LI77 160 aa7.45□□□□□ -1.22
UBE2D4-201ENST00000222402 RYR2Q92736 4967 aa7.4□□□□□ -1.22
UBE2D4-201ENST00000222402 C10orf95Q9H7T3 257 aa7.39□□□□□ -1.23
UBE2D4-201ENST00000222402 KMT2CQ8NEZ4 4911 aaKnown RBP7.38□□□□□ -1.23
UBE2D4-201ENST00000222402 KIAA1109Q2LD37 5005 aa7.38□□□□□ -1.23
UBE2D4-201ENST00000222402 KRTAP3-2Q9BYR7 98 aa7.37□□□□□ -1.23
UBE2D4-201ENST00000222402 CAMK2N1Q7Z7J9 78 aa7.33□□□□□ -1.24
UBE2D4-201ENST00000222402 KRTAP12-2P59991 146 aa7.32□□□□□ -1.24
UBE2D4-201ENST00000222402 RYR3Q15413 4870 aa7.31□□□□□ -1.24
UBE2D4-201ENST00000222402 RYR1P21817 5038 aa7.29□□□□□ -1.24
UBE2D4-201ENST00000222402 FAT3Q8TDW7 4589 aa7.29□□□□□ -1.24
UBE2D4-201ENST00000222402 H3BS24 57 aa7.28□□□□□ -1.24
UBE2D4-201ENST00000222402 KRTAP4-5Q9BYR2 181 aa7.27□□□□□ -1.24
UBE2D4-201ENST00000222402 KRTAP17-1Q9BYP8 105 aa7.26□□□□□ -1.25
UBE2D4-201ENST00000222402 KRTAP12-1P59990 96 aa7.24□□□□□ -1.25
UBE2D4-201ENST00000222402 HSPG2P98160 4391 aa7.2□□□□□ -1.26
UBE2D4-201ENST00000222402 PKHD1L1Q86WI1 4243 aa7.2□□□□□ -1.26
UBE2D4-201ENST00000222402 M0R2T5 61 aa7.13□□□□□ -1.27
UBE2D4-201ENST00000222402 LRP2P98164 4655 aa7.11□□□□□ -1.27
UBE2D4-201ENST00000222402 TNXBP22105 4242 aa7.08□□□□□ -1.28
UBE2D4-201ENST00000222402 NDUFAF8A1L188 74 aa7□□□□□ -1.29
UBE2D4-201ENST00000222402 LORP23490 312 aaPredicted RBP6.93□□□□□ -1.3
UBE2D4-201ENST00000222402 KRTAP4-1Q9BYQ7 146 aa6.92□□□□□ -1.3
UBE2D4-201ENST00000222402 LPAP08519 4548 aa6.91□□□□□ -1.3
UBE2D4-201ENST00000222402 LUZP6Q538Z0 58 aa6.9□□□□□ -1.31
UBE2D4-201ENST00000222402 EPPK1P58107 5090 aaKnown RBP6.89□□□□□ -1.31
UBE2D4-201ENST00000222402 PLAC4Q8WY50 150 aa6.87□□□□□ -1.31
UBE2D4-201ENST00000222402 TNP1P09430 55 aa6.83□□□□□ -1.32
UBE2D4-201ENST00000222402 HERC2O95714 4834 aa6.8□□□□□ -1.32
UBE2D4-201ENST00000222402 PP632Q6XCG6 107 aa6.78□□□□□ -1.32
UBE2D4-201ENST00000222402 ABCA13Q86UQ4 5058 aa6.74□□□□□ -1.33
UBE2D4-201ENST00000222402 KRTAP15-1Q3LI76 137 aa6.7□□□□□ -1.34
UBE2D4-201ENST00000222402 KRTAP10-10P60014 251 aa6.67□□□□□ -1.34
UBE2D4-201ENST00000222402 A0A0A0MQY5 61 aa6.47□□□□□ -1.37
UBE2D4-201ENST00000222402 MUC2Q02817 5179 aa6.46□□□□□ -1.38
UBE2D4-201ENST00000222402 BIRC6Q9NR09 4857 aa6.45□□□□□ -1.38
UBE2D4-201ENST00000222402 KRTAP19-2Q3LHN2 52 aa6.44□□□□□ -1.38
UBE2D4-201ENST00000222402 MUC17Q685J3 4493 aa6.41□□□□□ -1.38
UBE2D4-201ENST00000222402 HERC1Q15751 4861 aa6.35□□□□□ -1.39
UBE2D4-201ENST00000222402 FLGP20930 4061 aaPredicted RBP6.32□□□□□ -1.4
UBE2D4-201ENST00000222402 MT1HP80294 61 aa6.3□□□□□ -1.4
UBE2D4-201ENST00000222402 SPRR2GQ9BYE4 73 aa6.27□□□□□ -1.41
UBE2D4-201ENST00000222402 LCE2CQ5TA81 110 aa6.24□□□□□ -1.41
UBE2D4-201ENST00000222402 MT2AP02795 61 aa6.23□□□□□ -1.41
UBE2D4-201ENST00000222402 FAT4Q6V0I7 4981 aa6.22□□□□□ -1.41
UBE2D4-201ENST00000222402 KRTAP23-1A1A580 65 aa6.22□□□□□ -1.41
UBE2D4-201ENST00000222402 MT1FP04733 61 aa6.21□□□□□ -1.42
UBE2D4-201ENST00000222402 KRTAP19-1Q8IUB9 90 aa6.21□□□□□ -1.42
UBE2D4-201ENST00000222402 LCE3AQ5TA76 89 aa6.2□□□□□ -1.42
UBE2D4-201ENST00000222402 PCLOQ9Y6V0 5065 aa6.19□□□□□ -1.42
UBE2D4-201ENST00000222402 PRO2289Q9P1D8 64 aa6.18□□□□□ -1.42
UBE2D4-201ENST00000222402 HMCN2Q8NDA2 5059 aa6.15□□□□□ -1.43
UBE2D4-201ENST00000222402 RNF213Q63HN8 5207 aa6.15□□□□□ -1.43
UBE2D4-201ENST00000222402 KRTAP10-12P60413 245 aa6.08□□□□□ -1.44
UBE2D4-201ENST00000222402 UBR4Q5T4S7 5183 aa6.04□□□□□ -1.44
UBE2D4-201ENST00000222402 KRTAP9-8Q9BYQ0 159 aa6.02□□□□□ -1.45
UBE2D4-201ENST00000222402 KRTAP12-3P60328 96 aa5.99□□□□□ -1.45
UBE2D4-201ENST00000222402 KRTAP19-8Q3LI54 63 aa5.94□□□□□ -1.46
UBE2D4-201ENST00000222402 MT1BP07438 61 aa5.9□□□□□ -1.47
UBE2D4-201ENST00000222402 MT1XP80297 61 aa5.87□□□□□ -1.47
UBE2D4-201ENST00000222402 KRTAP8-1Q8IUC2 63 aa5.86□□□□□ -1.47
UBE2D4-201ENST00000222402 KRTAP10-5P60370 271 aa5.85□□□□□ -1.47
UBE2D4-201ENST00000222402 KRTAP10-7P60409 375 aaPredicted RBP5.8□□□□□ -1.48
UBE2D4-201ENST00000222402 SPRR5A0A1B0GTR4 108 aa5.78□□□□□ -1.48
UBE2D4-201ENST00000222402 KRTAP9-3Q9BYQ3 159 aa5.78□□□□□ -1.48
UBE2D4-201ENST00000222402 KRTAP19-5Q3LI72 72 aa5.65□□□□□ -1.51
UBE2D4-201ENST00000222402 LCE2BO14633 110 aa5.59□□□□□ -1.51
UBE2D4-201ENST00000222402 KRTAP4-8A0A0G2JLE6 195 aa5.52□□□□□ -1.53
UBE2D4-201ENST00000222402 KRTAP4-8Q9BYQ9 185 aa5.52□□□□□ -1.53
UBE2D4-201ENST00000222402 INE1O15225 51 aa5.49□□□□□ -1.53
UBE2D4-201ENST00000222402 LCE3CQ5T5A8 94 aa5.49□□□□□ -1.53
UBE2D4-201ENST00000222402 USH2AO75445 5202 aa5.45□□□□□ -1.54
UBE2D4-201ENST00000222402 FSIP2Q5CZC0 6907 aa5.39□□□□□ -1.55
UBE2D4-201ENST00000222402 LCE2AQ5TA79 106 aaPredicted RBP5.37□□□□□ -1.55
UBE2D4-201ENST00000222402 KMT2DO14686 5537 aa5.34□□□□□ -1.56
UBE2D4-201ENST00000222402 CRCT1Q9UGL9 99 aa5.3□□□□□ -1.56
UBE2D4-201ENST00000222402 KRTAP4-7Q9BYR0 210 aa5.26□□□□□ -1.57
UBE2D4-201ENST00000222402 KRTAP19-7Q3SYF9 63 aa5.17□□□□□ -1.58
UBE2D4-201ENST00000222402 MT1LQ93083 61 aa5.13□□□□□ -1.59
UBE2D4-201ENST00000222402 MT1EP04732 61 aa5.12□□□□□ -1.59
UBE2D4-201ENST00000222402 KRTAP19-4Q3LI73 84 aa5.1□□□□□ -1.59
UBE2D4-201ENST00000222402 KRTAP9-6A8MVA2 160 aa5.05□□□□□ -1.6
UBE2D4-201ENST00000222402 SPRR2FQ96RM1 72 aa5.02□□□□□ -1.61
UBE2D4-201ENST00000222402 KRTAP19-6Q3LI70 58 aa5□□□□□ -1.61
UBE2D4-201ENST00000222402 MT1GP13640 62 aa5□□□□□ -1.61
UBE2D4-201ENST00000222402 SSPOA2VEC9 5147 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms