RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 H2al1nQ497L1 109 aa9.71□□□□□ -0.85
Trim56-201ENSMUST00000054384 Parm1Q923D3 296 aa9.71□□□□□ -0.85
Trim56-201ENSMUST00000054384 Igkv4-79A0A075B5L8 119 aa9.71□□□□□ -0.85
Trim56-201ENSMUST00000054384 Igkv4-78A0A0A6YYE5 119 aa9.71□□□□□ -0.85
Trim56-201ENSMUST00000054384 Wt1P22561 449 aa9.71□□□□□ -0.85
Trim56-201ENSMUST00000054384 Ighv1-9A0A0A6YW37 117 aa9.71□□□□□ -0.85
Trim56-201ENSMUST00000054384 Znf664Q4VA44 261 aa9.71□□□□□ -0.86
Trim56-201ENSMUST00000054384 Klf11Q8K1S5 502 aa9.71□□□□□ -0.86
Trim56-201ENSMUST00000054384 Supt4h1bQ9Z199 117 aa9.71□□□□□ -0.86
Trim56-201ENSMUST00000054384 Zfp648D3Z0W3 525 aa9.71□□□□□ -0.86
Trim56-201ENSMUST00000054384 RhohQ9D3G9 191 aa9.71□□□□□ -0.86
Trim56-201ENSMUST00000054384 P01725 110 aa9.71□□□□□ -0.86
Trim56-201ENSMUST00000054384 IappP12968 93 aa9.71□□□□□ -0.86
Trim56-201ENSMUST00000054384 Spata46Q4FZF2 204 aa9.71□□□□□ -0.86
Trim56-201ENSMUST00000054384 Efna4O08542 206 aa9.7□□□□□ -0.86
Trim56-201ENSMUST00000054384 Rnf114Q9ET26 229 aa9.7□□□□□ -0.86
Trim56-201ENSMUST00000054384 Trav9d-1A0A075B699 112 aa9.7□□□□□ -0.86
Trim56-201ENSMUST00000054384 Igkv20-101-2A0A0G2JDU3 113 aa9.7□□□□□ -0.86
Trim56-201ENSMUST00000054384 Ighv1-76A0A0G2JFE9 117 aa9.7□□□□□ -0.86
Trim56-201ENSMUST00000054384 Wdr86D3Z757 380 aa9.7□□□□□ -0.86
Trim56-201ENSMUST00000054384 Gm10775Q3V290 127 aa9.7□□□□□ -0.86
Trim56-201ENSMUST00000054384 Gm4763Q8CFJ5 196 aa9.7□□□□□ -0.86
Trim56-201ENSMUST00000054384 Timm10bQ9WV96 100 aa9.7□□□□□ -0.86
Trim56-201ENSMUST00000054384 Igkv4-58A0A0G2JGI6 119 aa9.7□□□□□ -0.86
Trim56-201ENSMUST00000054384 Myod1P10085 318 aa9.7□□□□□ -0.86
Trim56-201ENSMUST00000054384 Trav14d-1A0A075B6B1 121 aa9.7□□□□□ -0.86
Trim56-201ENSMUST00000054384 Ndufc2Q9CQ54 120 aa9.7□□□□□ -0.86
Trim56-201ENSMUST00000054384 Prr3Q811B5 190 aaKnown RBP9.7□□□□□ -0.86
Trim56-201ENSMUST00000054384 PmvkQ9D1G2 192 aa9.7□□□□□ -0.86
Trim56-201ENSMUST00000054384 Tcl1b4P56844 120 aa9.69□□□□□ -0.86
Trim56-201ENSMUST00000054384 Col4a3Q9QZS0 1669 aa9.69□□□□□ -0.86
Trim56-201ENSMUST00000054384 CrygbP04344 175 aa9.69□□□□□ -0.86
Trim56-201ENSMUST00000054384 ApomQ9Z1R3 190 aa9.69□□□□□ -0.86
Trim56-201ENSMUST00000054384 Ighv1-58A0A075B5W9 117 aa9.69□□□□□ -0.86
Trim56-201ENSMUST00000054384 Lage3Q9CR70 148 aa9.69□□□□□ -0.86
Trim56-201ENSMUST00000054384 Edn1P22387 202 aa9.69□□□□□ -0.86
Trim56-201ENSMUST00000054384 Tctex1d4Q8CDY7 219 aa9.69□□□□□ -0.86
Trim56-201ENSMUST00000054384 Igkv13-85A0A075B666 115 aa9.69□□□□□ -0.86
Trim56-201ENSMUST00000054384 Igkv8-16A0A0G2JDG9 121 aa9.69□□□□□ -0.86
Trim56-201ENSMUST00000054384 CtsgP28293 261 aa9.68□□□□□ -0.86
Trim56-201ENSMUST00000054384 ArtnQ9Z0L2 224 aa9.68□□□□□ -0.86
Trim56-201ENSMUST00000054384 Ighv1-69A0A0G2JFS5 117 aa9.68□□□□□ -0.86
Trim56-201ENSMUST00000054384 BC049762Q8C601 163 aa9.68□□□□□ -0.86
Trim56-201ENSMUST00000054384 Pfn2Q9JJV2 140 aa9.68□□□□□ -0.86
Trim56-201ENSMUST00000054384 Igkv4-74A0A0B4J1I3 119 aa9.68□□□□□ -0.86
Trim56-201ENSMUST00000054384 Ttc9cQ810A3 171 aa9.68□□□□□ -0.86
Trim56-201ENSMUST00000054384 SonQ9QX47 2444 aaKnown RBP9.68□□□□□ -0.86
Trim56-201ENSMUST00000054384 Igkv14-126A0A075B5K0 117 aa9.68□□□□□ -0.86
Trim56-201ENSMUST00000054384 Igkv8-34A0A0G2JDU0 121 aa9.68□□□□□ -0.86
Trim56-201ENSMUST00000054384 Spaca3Q9D9X8 221 aa9.68□□□□□ -0.86
Trim56-201ENSMUST00000054384 Pcdh15Q99PJ1 1943 aa9.68□□□□□ -0.86
Trim56-201ENSMUST00000054384 C1qtnf5Q8K479 243 aa9.68□□□□□ -0.86
Trim56-201ENSMUST00000054384 4930442H23RikQ9D5G7 103 aa9.68□□□□□ -0.86
Trim56-201ENSMUST00000054384 Gm20517G3UVU6 152 aa9.67□□□□□ -0.86
Trim56-201ENSMUST00000054384 Gm20878L7N244 103 aa9.67□□□□□ -0.86
Trim56-201ENSMUST00000054384 Cd59aO55186 123 aa9.67□□□□□ -0.86
Trim56-201ENSMUST00000054384 ElnP54320 860 aa9.67□□□□□ -0.86
Trim56-201ENSMUST00000054384 Gm10188Q3V432 135 aa9.67□□□□□ -0.86
Trim56-201ENSMUST00000054384 Mogat1Q91ZV4 335 aa9.67□□□□□ -0.86
Trim56-201ENSMUST00000054384 Card19Q9D1I2 183 aa9.67□□□□□ -0.86
Trim56-201ENSMUST00000054384 Ighv1-36A0A0A6YXT2 117 aa9.67□□□□□ -0.86
Trim56-201ENSMUST00000054384 Foxi3E0CZH3 425 aa9.67□□□□□ -0.86
Trim56-201ENSMUST00000054384 Igh-VJ558P01758 117 aa9.67□□□□□ -0.86
Trim56-201ENSMUST00000054384 Tmem200bD3Z0P8 284 aa9.67□□□□□ -0.86
Trim56-201ENSMUST00000054384 CtsbP10605 339 aa9.67□□□□□ -0.86
Trim56-201ENSMUST00000054384 Atp6v0bQ91V37 205 aa9.67□□□□□ -0.86
Trim56-201ENSMUST00000054384 Tmem190Q9D2E9 166 aa9.67□□□□□ -0.86
Trim56-201ENSMUST00000054384 Lypd8Q9D7S0 255 aa9.67□□□□□ -0.86
Trim56-201ENSMUST00000054384 Ndufa11Q9D8B4 141 aa9.67□□□□□ -0.86
Trim56-201ENSMUST00000054384 Ep300B2RWS6 2412 aa9.67□□□□□ -0.86
Trim56-201ENSMUST00000054384 Ighv1-39A0A075B5V5 117 aa9.67□□□□□ -0.86
Trim56-201ENSMUST00000054384 NmbQ9CR53 121 aa9.67□□□□□ -0.86
Trim56-201ENSMUST00000054384 Mapk1ip1Q9D7G9 263 aa9.67□□□□□ -0.86
Trim56-201ENSMUST00000054384 CrygsO35486 178 aa9.66□□□□□ -0.86
Trim56-201ENSMUST00000054384 Svs5P30933 122 aa9.66□□□□□ -0.86
Trim56-201ENSMUST00000054384 Pfn1P62962 140 aa9.66□□□□□ -0.86
Trim56-201ENSMUST00000054384 Trav6d-7A0A075B6B0 112 aa9.66□□□□□ -0.86
Trim56-201ENSMUST00000054384 Tmem258P61166 79 aa9.66□□□□□ -0.86
Trim56-201ENSMUST00000054384 Nr2c2apQ3TV70 140 aa9.66□□□□□ -0.86
Trim56-201ENSMUST00000054384 LenepQ9WVB6 61 aa9.66□□□□□ -0.86
Trim56-201ENSMUST00000054384 P01655 112 aa9.66□□□□□ -0.86
Trim56-201ENSMUST00000054384 Dad1P61804 113 aa9.66□□□□□ -0.86
Trim56-201ENSMUST00000054384 Foxi1Q922I5 372 aa9.66□□□□□ -0.86
Trim56-201ENSMUST00000054384 AcanQ61282 2132 aaKnown RBP9.66□□□□□ -0.86
Trim56-201ENSMUST00000054384 P01738 130 aa9.66□□□□□ -0.86
Trim56-201ENSMUST00000054384 Gdf15Q9Z0J7 303 aa9.66□□□□□ -0.86
Trim56-201ENSMUST00000054384 Tm2d3Q8BJ83 261 aa9.66□□□□□ -0.86
Trim56-201ENSMUST00000054384 Rasl10aQ8K5A4 203 aa9.66□□□□□ -0.86
Trim56-201ENSMUST00000054384 Ndufs7Q9DC70 224 aa9.66□□□□□ -0.86
Trim56-201ENSMUST00000054384 Gata4Q08369 441 aa9.65□□□□□ -0.86
Trim56-201ENSMUST00000054384 A530064D06RikQ8BNV8 229 aa9.65□□□□□ -0.86
Trim56-201ENSMUST00000054384 F930015N05RikQ8C3A3 210 aa9.65□□□□□ -0.86
Trim56-201ENSMUST00000054384 Pygo1Q9D0P5 417 aa9.65□□□□□ -0.86
Trim56-201ENSMUST00000054384 Gvin1Q80SU7 2427 aa9.65□□□□□ -0.86
Trim56-201ENSMUST00000054384 ElaneQ3UP87 265 aa9.65□□□□□ -0.86
Trim56-201ENSMUST00000054384 Gm6040Q4QY32 63 aa9.65□□□□□ -0.86
Trim56-201ENSMUST00000054384 BB014433Q8C5R5 389 aa9.65□□□□□ -0.86
Trim56-201ENSMUST00000054384 Ss18l2Q9D174 77 aa9.65□□□□□ -0.86
Trim56-201ENSMUST00000054384 9130213A22RikQ3V3T2 120 aa9.65□□□□□ -0.86
Trim56-201ENSMUST00000054384 MgamB5THE2 1827 aa9.65□□□□□ -0.86
Retrieved 100 of 22,080 RNA–protein pairs in 113.8 ms