Protein–RNA interactions for Protein: A0A075B6B0

Trav6d-7, T cell receptor alpha variable 6D-7 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-7A0A075B6B0 Gm25239-201ENSMUST00000174915 86 ntBASIC27.78■■■□□ 2.04
Trav6d-7A0A075B6B0 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Trav6d-7A0A075B6B0 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
Trav6d-7A0A075B6B0 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Trav6d-7A0A075B6B0 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC25.23■■□□□ 1.63
Trav6d-7A0A075B6B0 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Trav6d-7A0A075B6B0 Psd-208ENSMUST00000224556 2034 ntBASIC24.55■■□□□ 1.52
Trav6d-7A0A075B6B0 Gm15042-201ENSMUST00000120212 883 ntBASIC24.35■■□□□ 1.49
Trav6d-7A0A075B6B0 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Trav6d-7A0A075B6B0 Gm24109-201ENSMUST00000175489 103 ntBASIC24.04■■□□□ 1.44
Trav6d-7A0A075B6B0 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Trav6d-7A0A075B6B0 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Trav6d-7A0A075B6B0 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
Trav6d-7A0A075B6B0 Gm15045-201ENSMUST00000117359 883 ntBASIC23.72■■□□□ 1.39
Trav6d-7A0A075B6B0 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Trav6d-7A0A075B6B0 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Trav6d-7A0A075B6B0 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Trav6d-7A0A075B6B0 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC23.44■■□□□ 1.34
Trav6d-7A0A075B6B0 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Trav6d-7A0A075B6B0 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Trav6d-7A0A075B6B0 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Trav6d-7A0A075B6B0 Gm23366-201ENSMUST00000175022 89 ntBASIC23.28■■□□□ 1.32
Trav6d-7A0A075B6B0 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Trav6d-7A0A075B6B0 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Trav6d-7A0A075B6B0 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
Trav6d-7A0A075B6B0 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC23.03■■□□□ 1.28
Trav6d-7A0A075B6B0 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Trav6d-7A0A075B6B0 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.24
Trav6d-7A0A075B6B0 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
Trav6d-7A0A075B6B0 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
Trav6d-7A0A075B6B0 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC22.72■■□□□ 1.23
Trav6d-7A0A075B6B0 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Trav6d-7A0A075B6B0 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Trav6d-7A0A075B6B0 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
Trav6d-7A0A075B6B0 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
Trav6d-7A0A075B6B0 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Trav6d-7A0A075B6B0 AC153911.1-202ENSMUST00000218534 1034 ntBASIC22.4■■□□□ 1.18
Trav6d-7A0A075B6B0 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC22.36■■□□□ 1.17
Trav6d-7A0A075B6B0 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Trav6d-7A0A075B6B0 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
Trav6d-7A0A075B6B0 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC22.3■■□□□ 1.16
Trav6d-7A0A075B6B0 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC22.27■■□□□ 1.15
Trav6d-7A0A075B6B0 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC22.23■■□□□ 1.15
Trav6d-7A0A075B6B0 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC22.23■■□□□ 1.15
Trav6d-7A0A075B6B0 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
Trav6d-7A0A075B6B0 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.15
Trav6d-7A0A075B6B0 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Trav6d-7A0A075B6B0 Gm10524-201ENSMUST00000181931 1893 ntBASIC22.13■■□□□ 1.13
Trav6d-7A0A075B6B0 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Trav6d-7A0A075B6B0 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Trav6d-7A0A075B6B0 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Trav6d-7A0A075B6B0 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Trav6d-7A0A075B6B0 Gm42596-201ENSMUST00000196305 1958 ntBASIC22.02■■□□□ 1.12
Trav6d-7A0A075B6B0 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Trav6d-7A0A075B6B0 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC22.01■■□□□ 1.11
Trav6d-7A0A075B6B0 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC22■■□□□ 1.11
Trav6d-7A0A075B6B0 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Trav6d-7A0A075B6B0 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Trav6d-7A0A075B6B0 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC21.91■■□□□ 1.1
Trav6d-7A0A075B6B0 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Trav6d-7A0A075B6B0 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Trav6d-7A0A075B6B0 Gm25238-201ENSMUST00000174914 89 ntBASIC21.87■■□□□ 1.09
Trav6d-7A0A075B6B0 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Trav6d-7A0A075B6B0 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Trav6d-7A0A075B6B0 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trav6d-7A0A075B6B0 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
Trav6d-7A0A075B6B0 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Trav6d-7A0A075B6B0 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trav6d-7A0A075B6B0 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Trav6d-7A0A075B6B0 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Trav6d-7A0A075B6B0 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Trav6d-7A0A075B6B0 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
Trav6d-7A0A075B6B0 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Trav6d-7A0A075B6B0 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trav6d-7A0A075B6B0 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC21.44■■□□□ 1.02
Trav6d-7A0A075B6B0 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Trav6d-7A0A075B6B0 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Trav6d-7A0A075B6B0 CT025624.2-201ENSMUST00000223609 1909 ntBASIC21.39■■□□□ 1.01
Trav6d-7A0A075B6B0 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
Trav6d-7A0A075B6B0 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Trav6d-7A0A075B6B0 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Trav6d-7A0A075B6B0 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
Trav6d-7A0A075B6B0 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trav6d-7A0A075B6B0 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trav6d-7A0A075B6B0 Gm27325-201ENSMUST00000175467 74 ntBASIC21.31■■□□□ 1
Trav6d-7A0A075B6B0 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC21.3■■□□□ 1
Trav6d-7A0A075B6B0 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Trav6d-7A0A075B6B0 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trav6d-7A0A075B6B0 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC21.24■□□□□ 0.99
Trav6d-7A0A075B6B0 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
Trav6d-7A0A075B6B0 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trav6d-7A0A075B6B0 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trav6d-7A0A075B6B0 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trav6d-7A0A075B6B0 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Trav6d-7A0A075B6B0 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC21.07■□□□□ 0.96
Trav6d-7A0A075B6B0 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trav6d-7A0A075B6B0 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trav6d-7A0A075B6B0 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trav6d-7A0A075B6B0 Gm25262-201ENSMUST00000174934 133 ntBASIC21.06■□□□□ 0.96
Trav6d-7A0A075B6B0 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms