RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 NDUFS5O43920 106 aa12.01□□□□□ -0.49
SYNGAP1-227ENST00000638142 MEGF8Q7Z7M0 2845 aa11.97□□□□□ -0.49
SYNGAP1-227ENST00000638142 ANAPC11Q9NYG5 84 aa11.97□□□□□ -0.49
SYNGAP1-227ENST00000638142 VPS13DQ5THJ4 4388 aa11.96□□□□□ -0.49
SYNGAP1-227ENST00000638142 LCA10Q71F78 164 aa11.94□□□□□ -0.5
SYNGAP1-227ENST00000638142 LINC01558Q9Y6Z2 57 aa11.93□□□□□ -0.5
SYNGAP1-227ENST00000638142 A6NED7 52 aa11.93□□□□□ -0.5
SYNGAP1-227ENST00000638142 HECTD4Q9Y4D8 3996 aa11.92□□□□□ -0.5
SYNGAP1-227ENST00000638142 A0A087X002 238 aa11.92□□□□□ -0.5
SYNGAP1-227ENST00000638142 ATP11AUNQ6ZP68 121 aa11.92□□□□□ -0.5
SYNGAP1-227ENST00000638142 NOTCH2NLQ7Z3S9 236 aa11.92□□□□□ -0.5
SYNGAP1-227ENST00000638142 STARD9Q9P2P6 4700 aa11.89□□□□□ -0.51
SYNGAP1-227ENST00000638142 DNAH8Q96JB1 4490 aa11.88□□□□□ -0.51
SYNGAP1-227ENST00000638142 SPAG11AQ6PDA7 123 aa11.86□□□□□ -0.51
SYNGAP1-227ENST00000638142 CDC42SE1Q9NRR8 79 aa11.86□□□□□ -0.51
SYNGAP1-227ENST00000638142 HRES1P13985 223 aa11.86□□□□□ -0.51
SYNGAP1-227ENST00000638142 IGLV7-43P04211 117 aa11.85□□□□□ -0.51
SYNGAP1-227ENST00000638142 SPTSSBQ8NFR3 76 aa11.85□□□□□ -0.51
SYNGAP1-227ENST00000638142 DNAH17Q9UFH2 4485 aa11.83□□□□□ -0.51
SYNGAP1-227ENST00000638142 TGP01266 2768 aa11.83□□□□□ -0.52
SYNGAP1-227ENST00000638142 SPINK6Q6UWN8 80 aa11.83□□□□□ -0.52
SYNGAP1-227ENST00000638142 FRAS1Q86XX4 4008 aa11.83□□□□□ -0.52
SYNGAP1-227ENST00000638142 PRKDCP78527 4128 aaKnown RBP11.82□□□□□ -0.52
SYNGAP1-227ENST00000638142 KTN1-AS1Q86SY8 53 aa11.82□□□□□ -0.52
SYNGAP1-227ENST00000638142 KRTAP13-3Q3SY46 172 aa11.8□□□□□ -0.52
SYNGAP1-227ENST00000638142 CIRBP-AS1Q8TBR5 109 aa11.79□□□□□ -0.52
SYNGAP1-227ENST00000638142 C1orf134Q5TEV5 83 aa11.78□□□□□ -0.52
SYNGAP1-227ENST00000638142 A6NN06 94 aa11.78□□□□□ -0.52
SYNGAP1-227ENST00000638142 Q5W150 140 aa11.78□□□□□ -0.52
SYNGAP1-227ENST00000638142 SSBP3-AS1Q7Z2R9 100 aa11.78□□□□□ -0.52
SYNGAP1-227ENST00000638142 C8orf87E5RJ46 101 aa11.77□□□□□ -0.53
SYNGAP1-227ENST00000638142 DNAH2Q9P225 4427 aa11.76□□□□□ -0.53
SYNGAP1-227ENST00000638142 KMT2AQ03164 3969 aa11.73□□□□□ -0.53
SYNGAP1-227ENST00000638142 SPINK7P58062 85 aa11.7□□□□□ -0.54
SYNGAP1-227ENST00000638142 ACYP2P14621 99 aa11.65□□□□□ -0.54
SYNGAP1-227ENST00000638142 LINC00313P59037 77 aa11.64□□□□□ -0.55
SYNGAP1-227ENST00000638142 PRR26Q8N8Z3 221 aa11.64□□□□□ -0.55
SYNGAP1-227ENST00000638142 FAM229AH3BQW9 127 aa11.62□□□□□ -0.55
SYNGAP1-227ENST00000638142 ALMS1Q8TCU4 4167 aa11.61□□□□□ -0.55
SYNGAP1-227ENST00000638142 RBM12B-AS1Q9P1G2 102 aa11.6□□□□□ -0.55
SYNGAP1-227ENST00000638142 DMAC1Q96GE9 116 aa11.59□□□□□ -0.55
SYNGAP1-227ENST00000638142 LY6G6CO95867 125 aa11.59□□□□□ -0.55
SYNGAP1-227ENST00000638142 C7orf65Q6ZTY9 151 aa11.59□□□□□ -0.55
SYNGAP1-227ENST00000638142 KRTAP13-2Q52LG2 175 aa11.56□□□□□ -0.56
SYNGAP1-227ENST00000638142 KRTAP10-2P60368 255 aa11.55□□□□□ -0.56
SYNGAP1-227ENST00000638142 DNAH11Q96DT5 4516 aa11.54□□□□□ -0.56
SYNGAP1-227ENST00000638142 IGKV2-30P06310 120 aa11.53□□□□□ -0.56
SYNGAP1-227ENST00000638142 DNAH6Q9C0G6 4158 aa11.5□□□□□ -0.57
SYNGAP1-227ENST00000638142 Q6ZSA8 131 aa11.49□□□□□ -0.57
SYNGAP1-227ENST00000638142 DNAH5Q8TE73 4624 aa11.49□□□□□ -0.57
SYNGAP1-227ENST00000638142 KRTAP16-1A8MUX0 517 aa11.48□□□□□ -0.57
SYNGAP1-227ENST00000638142 RETNLBQ9BQ08 111 aa11.48□□□□□ -0.57
SYNGAP1-227ENST00000638142 KRTAP10-1P60331 282 aa11.42□□□□□ -0.58
SYNGAP1-227ENST00000638142 KRTAP1-4P0C5Y4 121 aa11.42□□□□□ -0.58
SYNGAP1-227ENST00000638142 A0A1B0GU69 56 aa11.39□□□□□ -0.59
SYNGAP1-227ENST00000638142 LRP1BQ9NZR2 4599 aa11.34□□□□□ -0.59
SYNGAP1-227ENST00000638142 SPATA8Q6RVD6 105 aa11.34□□□□□ -0.59
SYNGAP1-227ENST00000638142 IGKV2D-30A0A075B6S6 120 aa11.33□□□□□ -0.6
SYNGAP1-227ENST00000638142 C4orf48Q5BLP8 95 aa11.32□□□□□ -0.6
SYNGAP1-227ENST00000638142 PKD1P98161 4303 aa11.29□□□□□ -0.6
SYNGAP1-227ENST00000638142 SPINK1P00995 79 aa11.29□□□□□ -0.6
SYNGAP1-227ENST00000638142 PLA2G1BP04054 148 aaKnown RBP11.28□□□□□ -0.6
SYNGAP1-227ENST00000638142 TYMSOSQ8TAI1 123 aa11.28□□□□□ -0.6
SYNGAP1-227ENST00000638142 UQCR11O14957 56 aa11.25□□□□□ -0.61
SYNGAP1-227ENST00000638142 MIR22HGQ0VDD5 57 aa11.23□□□□□ -0.61
SYNGAP1-227ENST00000638142 FAT2Q9NYQ8 4349 aa11.22□□□□□ -0.61
SYNGAP1-227ENST00000638142 VPS13BQ7Z7G8 4022 aa11.21□□□□□ -0.61
SYNGAP1-227ENST00000638142 PRAC1Q96KF2 57 aa11.19□□□□□ -0.62
SYNGAP1-227ENST00000638142 RPS29P62273 56 aaKnown RBP11.16□□□□□ -0.62
SYNGAP1-227ENST00000638142 ADM2Q7Z4H4 148 aa11.14□□□□□ -0.63
SYNGAP1-227ENST00000638142 KMT2CQ8NEZ4 4911 aaKnown RBP11.13□□□□□ -0.63
SYNGAP1-227ENST00000638142 LINC00304Q8N9R0 145 aa11.13□□□□□ -0.63
SYNGAP1-227ENST00000638142 HYDINQ4G0P3 5121 aa11.1□□□□□ -0.63
SYNGAP1-227ENST00000638142 Q8N1X5 172 aa11.05□□□□□ -0.64
SYNGAP1-227ENST00000638142 LINC01554Q52M75 96 aa10.98□□□□□ -0.65
SYNGAP1-227ENST00000638142 SACSQ9NZJ4 4579 aa10.96□□□□□ -0.65
SYNGAP1-227ENST00000638142 RYR3Q15413 4870 aa10.96□□□□□ -0.65
SYNGAP1-227ENST00000638142 A8MUU9 505 aa10.95□□□□□ -0.66
SYNGAP1-227ENST00000638142 C20orf166-AS1Q96NR2 134 aa10.95□□□□□ -0.66
SYNGAP1-227ENST00000638142 C9orf92A6NGG3 77 aa10.89□□□□□ -0.67
SYNGAP1-227ENST00000638142 PKHD1P08F94 4074 aa10.88□□□□□ -0.67
SYNGAP1-227ENST00000638142 SMR3BP02814 79 aaPredicted RBP10.86□□□□□ -0.67
SYNGAP1-227ENST00000638142 CSAG1Q6PB30 78 aa10.85□□□□□ -0.67
SYNGAP1-227ENST00000638142 RYR2Q92736 4967 aa10.82□□□□□ -0.68
SYNGAP1-227ENST00000638142 KRTAP3-1Q9BYR8 98 aa10.81□□□□□ -0.68
SYNGAP1-227ENST00000638142 PKHD1L1Q86WI1 4243 aa10.8□□□□□ -0.68
SYNGAP1-227ENST00000638142 H0YAA0 97 aa10.79□□□□□ -0.68
SYNGAP1-227ENST00000638142 KRTAP10-4P60372 401 aaPredicted RBP10.78□□□□□ -0.68
SYNGAP1-227ENST00000638142 DYNC1H1Q14204 4646 aaKnown RBP10.76□□□□□ -0.69
SYNGAP1-227ENST00000638142 APOBP04114 4563 aaKnown RBP10.73□□□□□ -0.69
SYNGAP1-227ENST00000638142 A0A1B0GVY2 172 aa10.72□□□□□ -0.69
SYNGAP1-227ENST00000638142 A0A1B0GU33 70 aa10.71□□□□□ -0.69
SYNGAP1-227ENST00000638142 H1FX-AS1Q4G0G2 97 aa10.67□□□□□ -0.7
SYNGAP1-227ENST00000638142 FAT1Q14517 4588 aa10.66□□□□□ -0.7
SYNGAP1-227ENST00000638142 COX6B2Q6YFQ2 88 aa10.65□□□□□ -0.7
SYNGAP1-227ENST00000638142 EPPK1P58107 5090 aaKnown RBP10.6□□□□□ -0.71
SYNGAP1-227ENST00000638142 KRTAP25-1Q3LHN0 102 aa10.56□□□□□ -0.72
SYNGAP1-227ENST00000638142 FLG2Q5D862 2391 aaPredicted RBP10.54□□□□□ -0.72
SYNGAP1-227ENST00000638142 K7ERS5 55 aa10.45□□□□□ -0.74
SYNGAP1-227ENST00000638142 FAT3Q8TDW7 4589 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms