RNA–Protein interactions for RNA: ENST00000622629.4

MSH6-215, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 4,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-215ENST00000622629 TRRAPQ9Y4A5 3859 aa7.79□□□□□ -1.16
MSH6-215ENST00000622629 SMR3BP02814 79 aaPredicted RBP7.79□□□□□ -1.16
MSH6-215ENST00000622629 PLAC8Q9NZF1 115 aa7.77□□□□□ -1.16
MSH6-215ENST00000622629 Q1T7F1 81 aa7.76□□□□□ -1.17
MSH6-215ENST00000622629 TENM2Q9NT68 2774 aa7.75□□□□□ -1.17
MSH6-215ENST00000622629 IGLV7-46A0A075B6I9 117 aa7.74□□□□□ -1.17
MSH6-215ENST00000622629 KRTAP29-1A8MX34 341 aaPredicted RBP7.72□□□□□ -1.17
MSH6-215ENST00000622629 TGP01266 2768 aa7.72□□□□□ -1.17
MSH6-215ENST00000622629 LINC00304Q8N9R0 145 aa7.7□□□□□ -1.18
MSH6-215ENST00000622629 Q8N9P0 234 aaPredicted RBP7.7□□□□□ -1.18
MSH6-215ENST00000622629 ZCCHC13Q8WW36 166 aaKnown RBP7.69□□□□□ -1.18
MSH6-215ENST00000622629 C9orf92A6NGG3 77 aa7.69□□□□□ -1.18
MSH6-215ENST00000622629 A8MU10 97 aa7.69□□□□□ -1.18
MSH6-215ENST00000622629 KRTAP21-3Q3LHN1 58 aa7.68□□□□□ -1.18
MSH6-215ENST00000622629 Q6ZRN7 208 aaPredicted RBP7.67□□□□□ -1.18
MSH6-215ENST00000622629 KRTAP10-2P60368 255 aa7.66□□□□□ -1.18
MSH6-215ENST00000622629 HRES1P13985 223 aa7.65□□□□□ -1.19
MSH6-215ENST00000622629 KRTAP16-1A8MUX0 517 aa7.64□□□□□ -1.19
MSH6-215ENST00000622629 A0A087X002 238 aa7.63□□□□□ -1.19
MSH6-215ENST00000622629 NOTCH2NLQ7Z3S9 236 aa7.63□□□□□ -1.19
MSH6-215ENST00000622629 Q8N1X5 172 aa7.63□□□□□ -1.19
MSH6-215ENST00000622629 LINC00483Q53H64 154 aa7.63□□□□□ -1.19
MSH6-215ENST00000622629 AKAP9Q99996 3911 aa7.63□□□□□ -1.19
MSH6-215ENST00000622629 DMBT1Q9UGM3 2413 aaPredicted RBP7.63□□□□□ -1.19
MSH6-215ENST00000622629 Q6ZR54 194 aa7.62□□□□□ -1.19
MSH6-215ENST00000622629 Q5VV11 94 aa7.61□□□□□ -1.19
MSH6-215ENST00000622629 CDC42SE1Q9NRR8 79 aa7.61□□□□□ -1.19
MSH6-215ENST00000622629 UQCR11O14957 56 aa7.61□□□□□ -1.19
MSH6-215ENST00000622629 LCE6AA0A183 80 aa7.59□□□□□ -1.19
MSH6-215ENST00000622629 KRTAP10-1P60331 282 aa7.59□□□□□ -1.19
MSH6-215ENST00000622629 KRTAP13-1Q8IUC0 172 aa7.57□□□□□ -1.2
MSH6-215ENST00000622629 Q5W150 140 aa7.57□□□□□ -1.2
MSH6-215ENST00000622629 MIR22HGQ0VDD5 57 aa7.56□□□□□ -1.2
MSH6-215ENST00000622629 LUZP6Q538Z0 58 aa7.55□□□□□ -1.2
MSH6-215ENST00000622629 Q75L30 129 aa7.55□□□□□ -1.2
MSH6-215ENST00000622629 LINC01558Q9Y6Z2 57 aa7.54□□□□□ -1.2
MSH6-215ENST00000622629 CSAG1Q6PB30 78 aa7.51□□□□□ -1.21
MSH6-215ENST00000622629 SPINK7P58062 85 aa7.5□□□□□ -1.21
MSH6-215ENST00000622629 SRRM2Q9UQ35 2752 aaKnown RBP7.49□□□□□ -1.21
MSH6-215ENST00000622629 J3QL48 77 aa7.45□□□□□ -1.22
MSH6-215ENST00000622629 FBN3Q75N90 2809 aa7.43□□□□□ -1.22
MSH6-215ENST00000622629 SEC61BP60468 96 aaKnown RBP7.4□□□□□ -1.22
MSH6-215ENST00000622629 KRTAP13-2Q52LG2 175 aa7.39□□□□□ -1.23
MSH6-215ENST00000622629 DMAC1Q96GE9 116 aa7.39□□□□□ -1.23
MSH6-215ENST00000622629 A6NN06 94 aa7.32□□□□□ -1.24
MSH6-215ENST00000622629 ASB16-AS1Q495Z4 193 aa7.32□□□□□ -1.24
MSH6-215ENST00000622629 ADM2Q7Z4H4 148 aa7.32□□□□□ -1.24
MSH6-215ENST00000622629 A0A1B0GU33 70 aa7.28□□□□□ -1.24
MSH6-215ENST00000622629 A0A0D9SG42 100 aa7.28□□□□□ -1.24
MSH6-215ENST00000622629 NDUFAF8A1L188 74 aa7.27□□□□□ -1.25
MSH6-215ENST00000622629 MEGF8Q7Z7M0 2845 aa7.26□□□□□ -1.25
MSH6-215ENST00000622629 COL7A1Q02388 2944 aa7.23□□□□□ -1.25
MSH6-215ENST00000622629 CRIPTQ9P021 101 aa7.21□□□□□ -1.25
MSH6-215ENST00000622629 ROMO1P60602 79 aa7.18□□□□□ -1.26
MSH6-215ENST00000622629 Q5VSD8 79 aa7.18□□□□□ -1.26
MSH6-215ENST00000622629 Q6ZSA8 131 aa7.18□□□□□ -1.26
MSH6-215ENST00000622629 CSMD3Q7Z407 3707 aa7.16□□□□□ -1.26
MSH6-215ENST00000622629 KRTAP1-4P0C5Y4 121 aa7.16□□□□□ -1.26
MSH6-215ENST00000622629 DNHD1Q96M86 4753 aa7.14□□□□□ -1.27
MSH6-215ENST00000622629 SPATA8Q6RVD6 105 aa7.11□□□□□ -1.27
MSH6-215ENST00000622629 COX6B2Q6YFQ2 88 aa7.08□□□□□ -1.28
MSH6-215ENST00000622629 HUWE1Q7Z6Z7 4374 aaKnown RBP7.08□□□□□ -1.28
MSH6-215ENST00000622629 RPS29P62273 56 aaKnown RBP7.07□□□□□ -1.28
MSH6-215ENST00000622629 S4R3F8 94 aa7.05□□□□□ -1.28
MSH6-215ENST00000622629 H1FX-AS1Q4G0G2 97 aa7.04□□□□□ -1.28
MSH6-215ENST00000622629 KRTAP13-3Q3SY46 172 aa6.99□□□□□ -1.29
MSH6-215ENST00000622629 A8MUU9 505 aa6.97□□□□□ -1.29
MSH6-215ENST00000622629 C20orf166-AS1Q96NR2 134 aa6.97□□□□□ -1.29
MSH6-215ENST00000622629 DNAH9Q9NYC9 4486 aa6.97□□□□□ -1.29
MSH6-215ENST00000622629 RPL37P61927 97 aaKnown RBP6.95□□□□□ -1.3
MSH6-215ENST00000622629 KRTAP25-1Q3LHN0 102 aa6.92□□□□□ -1.3
MSH6-215ENST00000622629 CAMK2N1Q7Z7J9 78 aa6.9□□□□□ -1.3
MSH6-215ENST00000622629 PRKDCP78527 4128 aaKnown RBP6.88□□□□□ -1.31
MSH6-215ENST00000622629 A0A1B0GVY2 172 aa6.87□□□□□ -1.31
MSH6-215ENST00000622629 ANK2Q01484 3957 aa6.85□□□□□ -1.31
MSH6-215ENST00000622629 R4GN34 69 aa6.83□□□□□ -1.32
MSH6-215ENST00000622629 PLECQ15149 4684 aaKnown RBP6.8□□□□□ -1.32
MSH6-215ENST00000622629 H0YAA0 97 aa6.77□□□□□ -1.32
MSH6-215ENST00000622629 M0QZ58 72 aa6.77□□□□□ -1.33
MSH6-215ENST00000622629 DNAH10Q8IVF4 4471 aa6.75□□□□□ -1.33
MSH6-215ENST00000622629 XP32Q5T750 250 aa6.74□□□□□ -1.33
MSH6-215ENST00000622629 STARD9Q9P2P6 4700 aa6.73□□□□□ -1.33
MSH6-215ENST00000622629 CMYA5Q8N3K9 4069 aa6.67□□□□□ -1.34
MSH6-215ENST00000622629 KRTAP3-1Q9BYR8 98 aa6.62□□□□□ -1.35
MSH6-215ENST00000622629 KRTAP10-8P60410 259 aa6.61□□□□□ -1.35
MSH6-215ENST00000622629 M0R2T5 61 aa6.61□□□□□ -1.35
MSH6-215ENST00000622629 P0C880 135 aa6.59□□□□□ -1.36
MSH6-215ENST00000622629 DNAH3Q8TD57 4116 aa6.58□□□□□ -1.36
MSH6-215ENST00000622629 DNAH1Q9P2D7 4330 aa6.58□□□□□ -1.36
MSH6-215ENST00000622629 DNAH11Q96DT5 4516 aa6.56□□□□□ -1.36
MSH6-215ENST00000622629 KMT2AQ03164 3969 aa6.54□□□□□ -1.36
MSH6-215ENST00000622629 C10orf95Q9H7T3 257 aa6.54□□□□□ -1.36
MSH6-215ENST00000622629 VPS13DQ5THJ4 4388 aa6.53□□□□□ -1.36
MSH6-215ENST00000622629 DNAH5Q8TE73 4624 aa6.51□□□□□ -1.37
MSH6-215ENST00000622629 LYSTQ99698 3801 aa6.5□□□□□ -1.37
MSH6-215ENST00000622629 KRTAP4-5Q9BYR2 181 aa6.49□□□□□ -1.37
MSH6-215ENST00000622629 TPRXLQ17RH7 258 aa6.48□□□□□ -1.37
MSH6-215ENST00000622629 ALMS1Q8TCU4 4167 aa6.47□□□□□ -1.37
MSH6-215ENST00000622629 KRTAP10-4P60372 401 aaPredicted RBP6.41□□□□□ -1.38
MSH6-215ENST00000622629 FAT1Q14517 4588 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms