RNA–Protein interactions for RNA: ENST00000613459.4

HMGXB3-206, Transcript of HMG-box containing 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene HMGXB3, Length 5,567 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-206ENST00000613459 C10orf95Q9H7T3 257 aa9.48□□□□□ -0.89
HMGXB3-206ENST00000613459 ATMQ13315 3056 aa9.48□□□□□ -0.89
HMGXB3-206ENST00000613459 TACC2O95359 2948 aa9.47□□□□□ -0.89
HMGXB3-206ENST00000613459 KMT2BQ9UMN6 2715 aaPredicted RBP9.46□□□□□ -0.9
HMGXB3-206ENST00000613459 UTP20O75691 2785 aaKnown RBP9.42□□□□□ -0.9
HMGXB3-206ENST00000613459 COL12A1Q99715 3063 aa9.39□□□□□ -0.91
HMGXB3-206ENST00000613459 LRBAP50851 2863 aa9.37□□□□□ -0.91
HMGXB3-206ENST00000613459 APCP25054 2843 aa9.37□□□□□ -0.91
HMGXB3-206ENST00000613459 ADGRG4Q8IZF6 3080 aa9.37□□□□□ -0.91
HMGXB3-206ENST00000613459 FRYLO94915 3013 aa9.37□□□□□ -0.91
HMGXB3-206ENST00000613459 DMXL2Q8TDJ6 3036 aa9.36□□□□□ -0.91
HMGXB3-206ENST00000613459 ZZEF1O43149 2961 aa9.33□□□□□ -0.92
HMGXB3-206ENST00000613459 HIVEP1P15822 2718 aa9.33□□□□□ -0.92
HMGXB3-206ENST00000613459 SZT2Q5T011 3432 aa9.32□□□□□ -0.92
HMGXB3-206ENST00000613459 ASH1LQ9NR48 2969 aaKnown RBP9.3□□□□□ -0.92
HMGXB3-206ENST00000613459 BOD1L1Q8NFC6 3051 aa9.29□□□□□ -0.92
HMGXB3-206ENST00000613459 NIPBLQ6KC79 2804 aaeCLIP9.28□□□□□ -0.92
HMGXB3-206ENST00000613459 KRTAP1-4P0C5Y4 121 aa9.28□□□□□ -0.92
HMGXB3-206ENST00000613459 XP32Q5T750 250 aa9.26□□□□□ -0.93
HMGXB3-206ENST00000613459 REV3LO60673 3130 aa9.25□□□□□ -0.93
HMGXB3-206ENST00000613459 H0YAA0 97 aa9.25□□□□□ -0.93
HMGXB3-206ENST00000613459 COL6A3P12111 3177 aa9.25□□□□□ -0.93
HMGXB3-206ENST00000613459 P0C880 135 aa9.22□□□□□ -0.93
HMGXB3-206ENST00000613459 SPEGQ15772 3267 aa9.19□□□□□ -0.94
HMGXB3-206ENST00000613459 TPRXLQ17RH7 258 aa9.18□□□□□ -0.94
HMGXB3-206ENST00000613459 CELSR2Q9HCU4 2923 aa9.17□□□□□ -0.94
HMGXB3-206ENST00000613459 TENM4Q6N022 2769 aa9.16□□□□□ -0.94
HMGXB3-206ENST00000613459 KRTAP10-8P60410 259 aa9.11□□□□□ -0.95
HMGXB3-206ENST00000613459 EYSQ5T1H1 3165 aa9.09□□□□□ -0.95
HMGXB3-206ENST00000613459 ZANQ9Y493 2812 aa9.06□□□□□ -0.96
HMGXB3-206ENST00000613459 DCHS2Q6V1P9 2916 aa9.06□□□□□ -0.96
HMGXB3-206ENST00000613459 CRYBG3Q68DQ2 2970 aa9.06□□□□□ -0.96
HMGXB3-206ENST00000613459 CFAP47Q6ZTR5 3102 aa9.03□□□□□ -0.96
HMGXB3-206ENST00000613459 USP34Q70CQ2 3546 aa9.03□□□□□ -0.96
HMGXB3-206ENST00000613459 PRO2289Q9P1D8 64 aa9□□□□□ -0.97
HMGXB3-206ENST00000613459 SPTBN5Q9NRC6 3674 aaKnown RBP8.99□□□□□ -0.97
HMGXB3-206ENST00000613459 TNRC18O15417 2968 aaPredicted RBP8.98□□□□□ -0.97
HMGXB3-206ENST00000613459 HRNRQ86YZ3 2850 aaPredicted RBP8.97□□□□□ -0.97
HMGXB3-206ENST00000613459 KRTAP13-3Q3SY46 172 aa8.96□□□□□ -0.98
HMGXB3-206ENST00000613459 A0A1B0GVY2 172 aa8.9□□□□□ -0.98
HMGXB3-206ENST00000613459 MYO15AQ9UKN7 3530 aa8.9□□□□□ -0.99
HMGXB3-206ENST00000613459 KRTAP10-10P60014 251 aa8.86□□□□□ -0.99
HMGXB3-206ENST00000613459 FBN2P35556 2912 aa8.84□□□□□ -0.99
HMGXB3-206ENST00000613459 DMXL1Q9Y485 3027 aa8.84□□□□□ -0.99
HMGXB3-206ENST00000613459 NF1P21359 2839 aa8.79□□□□□ -1
HMGXB3-206ENST00000613459 LOC400499M0QZD8 3231 aa8.75□□□□□ -1.01
HMGXB3-206ENST00000613459 TENM3Q9P273 2699 aa8.72□□□□□ -1.01
HMGXB3-206ENST00000613459 TENM1Q9UKZ4 2725 aa8.71□□□□□ -1.02
HMGXB3-206ENST00000613459 DCHS1Q96JQ0 3298 aa8.68□□□□□ -1.02
HMGXB3-206ENST00000613459 WDFY3Q8IZQ1 3526 aa8.68□□□□□ -1.02
HMGXB3-206ENST00000613459 KRTAP12-2P59991 146 aa8.65□□□□□ -1.02
HMGXB3-206ENST00000613459 KRTAP13-4Q3LI77 160 aa8.61□□□□□ -1.03
HMGXB3-206ENST00000613459 CELSR1Q9NYQ6 3014 aa8.61□□□□□ -1.03
HMGXB3-206ENST00000613459 TENM2Q9NT68 2774 aa8.6□□□□□ -1.03
HMGXB3-206ENST00000613459 ZFHX4Q86UP3 3567 aa8.58□□□□□ -1.04
HMGXB3-206ENST00000613459 MXRA5Q9NR99 2828 aa8.58□□□□□ -1.04
HMGXB3-206ENST00000613459 CSMD1Q96PZ7 3565 aa8.57□□□□□ -1.04
HMGXB3-206ENST00000613459 TGP01266 2768 aa8.57□□□□□ -1.04
HMGXB3-206ENST00000613459 KRTAP12-1P59990 96 aa8.49□□□□□ -1.05
HMGXB3-206ENST00000613459 SMG1Q96Q15 3661 aaKnown RBP8.39□□□□□ -1.07
HMGXB3-206ENST00000613459 PKD1L1Q8TDX9 2849 aa8.36□□□□□ -1.07
HMGXB3-206ENST00000613459 RELNP78509 3460 aa8.33□□□□□ -1.08
HMGXB3-206ENST00000613459 KRTAP3-1Q9BYR8 98 aa8.32□□□□□ -1.08
HMGXB3-206ENST00000613459 ASPMQ8IZT6 3477 aa8.31□□□□□ -1.08
HMGXB3-206ENST00000613459 PDZD2O15018 2839 aa8.3□□□□□ -1.08
HMGXB3-206ENST00000613459 KRTAP15-1Q3LI76 137 aa8.28□□□□□ -1.08
HMGXB3-206ENST00000613459 VWFP04275 2813 aa8.24□□□□□ -1.09
HMGXB3-206ENST00000613459 LAMA5O15230 3695 aa8.19□□□□□ -1.1
HMGXB3-206ENST00000613459 SVEP1Q4LDE5 3571 aa8.16□□□□□ -1.1
HMGXB3-206ENST00000613459 KRTAP10-6P60371 365 aaPredicted RBP8.15□□□□□ -1.1
HMGXB3-206ENST00000613459 INE1O15225 51 aa8.15□□□□□ -1.1
HMGXB3-206ENST00000613459 DMDP11532 3685 aa8.12□□□□□ -1.11
HMGXB3-206ENST00000613459 ZFHX3Q15911 3703 aa8.12□□□□□ -1.11
HMGXB3-206ENST00000613459 FBN1P35555 2871 aaKnown RBP8.07□□□□□ -1.12
HMGXB3-206ENST00000613459 OTOGQ6ZRI0 2925 aa8.05□□□□□ -1.12
HMGXB3-206ENST00000613459 NBPF19A0A087WUL8 3843 aa7.99□□□□□ -1.13
HMGXB3-206ENST00000613459 SPENQ96T58 3664 aaKnown RBP7.99□□□□□ -1.13
HMGXB3-206ENST00000613459 FBN3Q75N90 2809 aa7.93□□□□□ -1.14
HMGXB3-206ENST00000613459 ANK3Q12955 4377 aaKnown RBP7.91□□□□□ -1.14
HMGXB3-206ENST00000613459 CUBNO60494 3623 aa7.91□□□□□ -1.14
HMGXB3-206ENST00000613459 KRTAP3-2Q9BYR7 98 aa7.87□□□□□ -1.15
HMGXB3-206ENST00000613459 SRRM2Q9UQ35 2752 aaKnown RBP7.85□□□□□ -1.15
HMGXB3-206ENST00000613459 KRTAP23-1A1A580 65 aa7.84□□□□□ -1.15
HMGXB3-206ENST00000613459 MEGF8Q7Z7M0 2845 aa7.82□□□□□ -1.16
HMGXB3-206ENST00000613459 MT1HL1P0DM35 61 aa7.81□□□□□ -1.16
HMGXB3-206ENST00000613459 KRTAP10-12P60413 245 aa7.8□□□□□ -1.16
HMGXB3-206ENST00000613459 KRTAP3-3Q9BYR6 98 aa7.8□□□□□ -1.16
HMGXB3-206ENST00000613459 MUC3AQ02505 3323 aa7.72□□□□□ -1.17
HMGXB3-206ENST00000613459 COL7A1Q02388 2944 aa7.67□□□□□ -1.18
HMGXB3-206ENST00000613459 KRTAP10-4P60372 401 aaPredicted RBP7.65□□□□□ -1.19
HMGXB3-206ENST00000613459 TRRAPQ9Y4A5 3859 aa7.61□□□□□ -1.19
HMGXB3-206ENST00000613459 KRTAP12-3P60328 96 aa7.59□□□□□ -1.19
HMGXB3-206ENST00000613459 BSNQ9UPA5 3926 aa7.58□□□□□ -1.2
HMGXB3-206ENST00000613459 CSMD2Q7Z408 3487 aa7.57□□□□□ -1.2
HMGXB3-206ENST00000613459 VPS13CQ709C8 3753 aa7.52□□□□□ -1.21
HMGXB3-206ENST00000613459 CRCT1Q9UGL9 99 aa7.5□□□□□ -1.21
HMGXB3-206ENST00000613459 HUWE1Q7Z6Z7 4374 aaKnown RBP7.5□□□□□ -1.21
HMGXB3-206ENST00000613459 LCE3AQ5TA76 89 aa7.46□□□□□ -1.22
HMGXB3-206ENST00000613459 KRTAP4-5Q9BYR2 181 aa7.45□□□□□ -1.22
HMGXB3-206ENST00000613459 ALMS1Q8TCU4 4167 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms