RNA–Protein interactions for RNA: ENST00000610726.4

CSDE1-218, Transcript of cold shock domain containing E1, humanhuman

TSL 5 BASIC

Gene CSDE1, Length 4,312 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-218ENST00000610726 CYSTM1Q9H1C7 97 aa4.33□□□□□ -1.72
CSDE1-218ENST00000610726 LINC00483Q53H64 154 aa4.31□□□□□ -1.72
CSDE1-218ENST00000610726 Q8N9P0 234 aaPredicted RBP4.31□□□□□ -1.72
CSDE1-218ENST00000610726 KRTAP21-3Q3LHN1 58 aa4.3□□□□□ -1.72
CSDE1-218ENST00000610726 SPANXA2-OT1Q8N9U9 137 aa4.3□□□□□ -1.72
CSDE1-218ENST00000610726 PRO0628Q9UI54 55 aa4.3□□□□□ -1.72
CSDE1-218ENST00000610726 HRES1P13985 223 aa4.29□□□□□ -1.72
CSDE1-218ENST00000610726 TRRAPQ9Y4A5 3859 aa4.28□□□□□ -1.72
CSDE1-218ENST00000610726 SRRM2Q9UQ35 2752 aaKnown RBP4.28□□□□□ -1.72
CSDE1-218ENST00000610726 Q6ZSA8 131 aa4.27□□□□□ -1.73
CSDE1-218ENST00000610726 ZCCHC13Q8WW36 166 aaKnown RBP4.26□□□□□ -1.73
CSDE1-218ENST00000610726 UQCR11O14957 56 aa4.26□□□□□ -1.73
CSDE1-218ENST00000610726 CYP4F30PQ9H0H9 118 aa4.26□□□□□ -1.73
CSDE1-218ENST00000610726 RBM12B-AS1Q9P1G2 102 aa4.26□□□□□ -1.73
CSDE1-218ENST00000610726 Q5W150 140 aa4.25□□□□□ -1.73
CSDE1-218ENST00000610726 NOTCH2NLQ7Z3S9 236 aa4.25□□□□□ -1.73
CSDE1-218ENST00000610726 KRTAP13-1Q8IUC0 172 aa4.24□□□□□ -1.73
CSDE1-218ENST00000610726 ANK3Q12955 4377 aaKnown RBP4.22□□□□□ -1.73
CSDE1-218ENST00000610726 SPINK7P58062 85 aa4.22□□□□□ -1.73
CSDE1-218ENST00000610726 KRTAP29-1A8MX34 341 aaPredicted RBP4.22□□□□□ -1.73
CSDE1-218ENST00000610726 KRTAP13-2Q52LG2 175 aa4.21□□□□□ -1.74
CSDE1-218ENST00000610726 MIR22HGQ0VDD5 57 aa4.21□□□□□ -1.74
CSDE1-218ENST00000610726 LINC01554Q52M75 96 aa4.19□□□□□ -1.74
CSDE1-218ENST00000610726 A0A0D9SG42 100 aa4.18□□□□□ -1.74
CSDE1-218ENST00000610726 VPS13CQ709C8 3753 aa4.16□□□□□ -1.74
CSDE1-218ENST00000610726 FP248Q71RG6 208 aaPredicted RBP4.16□□□□□ -1.74
CSDE1-218ENST00000610726 Q1T7F1 81 aa4.15□□□□□ -1.74
CSDE1-218ENST00000610726 FBN3Q75N90 2809 aa4.14□□□□□ -1.75
CSDE1-218ENST00000610726 OXTP01178 125 aa4.13□□□□□ -1.75
CSDE1-218ENST00000610726 SPINT4Q6UDR6 99 aa4.13□□□□□ -1.75
CSDE1-218ENST00000610726 ASB16-AS1Q495Z4 193 aa4.13□□□□□ -1.75
CSDE1-218ENST00000610726 Q5XG85 94 aa4.11□□□□□ -1.75
CSDE1-218ENST00000610726 A0A1B0GU33 70 aa4.11□□□□□ -1.75
CSDE1-218ENST00000610726 SEC61BP60468 96 aaKnown RBP4.11□□□□□ -1.75
CSDE1-218ENST00000610726 M0R2T5 61 aa4.1□□□□□ -1.75
CSDE1-218ENST00000610726 LINC01558Q9Y6Z2 57 aa4.1□□□□□ -1.75
CSDE1-218ENST00000610726 ZNF469Q96JG9 3925 aaPredicted RBP4.1□□□□□ -1.75
CSDE1-218ENST00000610726 CDC42SE1Q9NRR8 79 aa4.1□□□□□ -1.75
CSDE1-218ENST00000610726 CSAG1Q6PB30 78 aa4.1□□□□□ -1.75
CSDE1-218ENST00000610726 DMAC1Q96GE9 116 aa4.09□□□□□ -1.75
CSDE1-218ENST00000610726 S4R3F8 94 aa4.09□□□□□ -1.75
CSDE1-218ENST00000610726 COL7A1Q02388 2944 aa4.09□□□□□ -1.75
CSDE1-218ENST00000610726 KRTAP1-4P0C5Y4 121 aa4.08□□□□□ -1.76
CSDE1-218ENST00000610726 RPS29P62273 56 aaKnown RBP4.08□□□□□ -1.76
CSDE1-218ENST00000610726 Q75L30 129 aa4.07□□□□□ -1.76
CSDE1-218ENST00000610726 Q5VV11 94 aa4.07□□□□□ -1.76
CSDE1-218ENST00000610726 MEGF8Q7Z7M0 2845 aa4.05□□□□□ -1.76
CSDE1-218ENST00000610726 CRIPTQ9P021 101 aa4.04□□□□□ -1.76
CSDE1-218ENST00000610726 KTN1-AS1Q86SY8 53 aa4□□□□□ -1.77
CSDE1-218ENST00000610726 R4GN34 69 aa4□□□□□ -1.77
CSDE1-218ENST00000610726 CAMK2N1Q7Z7J9 78 aa4□□□□□ -1.77
CSDE1-218ENST00000610726 RPL37P61927 97 aaKnown RBP3.98□□□□□ -1.77
CSDE1-218ENST00000610726 A8MUU9 505 aa3.96□□□□□ -1.78
CSDE1-218ENST00000610726 SPATA8Q6RVD6 105 aa3.96□□□□□ -1.78
CSDE1-218ENST00000610726 C20orf166-AS1Q96NR2 134 aa3.95□□□□□ -1.78
CSDE1-218ENST00000610726 A0A1B0GVY2 172 aa3.94□□□□□ -1.78
CSDE1-218ENST00000610726 ADM2Q7Z4H4 148 aa3.94□□□□□ -1.78
CSDE1-218ENST00000610726 M0QZ58 72 aa3.94□□□□□ -1.78
CSDE1-218ENST00000610726 H1FX-AS1Q4G0G2 97 aa3.94□□□□□ -1.78
CSDE1-218ENST00000610726 AKAP9Q99996 3911 aa3.93□□□□□ -1.78
CSDE1-218ENST00000610726 LCA10Q71F78 164 aa3.93□□□□□ -1.78
CSDE1-218ENST00000610726 PRAC1Q96KF2 57 aa3.93□□□□□ -1.78
CSDE1-218ENST00000610726 XP32Q5T750 250 aa3.91□□□□□ -1.78
CSDE1-218ENST00000610726 CSMD3Q7Z407 3707 aa3.9□□□□□ -1.79
CSDE1-218ENST00000610726 KRTAP16-1A8MUX0 517 aa3.89□□□□□ -1.79
CSDE1-218ENST00000610726 HUWE1Q7Z6Z7 4374 aaKnown RBP3.88□□□□□ -1.79
CSDE1-218ENST00000610726 A8MU10 97 aa3.87□□□□□ -1.79
CSDE1-218ENST00000610726 KRTAP10-8P60410 259 aa3.85□□□□□ -1.79
CSDE1-218ENST00000610726 DNHD1Q96M86 4753 aa3.84□□□□□ -1.79
CSDE1-218ENST00000610726 KRTAP13-3Q3SY46 172 aa3.83□□□□□ -1.8
CSDE1-218ENST00000610726 TPRXLQ17RH7 258 aa3.82□□□□□ -1.8
CSDE1-218ENST00000610726 ROMO1P60602 79 aa3.81□□□□□ -1.8
CSDE1-218ENST00000610726 DNAH9Q9NYC9 4486 aa3.77□□□□□ -1.81
CSDE1-218ENST00000610726 PLAC4Q8WY50 150 aa3.77□□□□□ -1.81
CSDE1-218ENST00000610726 A6NN06 94 aa3.73□□□□□ -1.81
CSDE1-218ENST00000610726 PLECQ15149 4684 aaKnown RBP3.72□□□□□ -1.81
CSDE1-218ENST00000610726 LUZP6Q538Z0 58 aa3.71□□□□□ -1.82
CSDE1-218ENST00000610726 ANK2Q01484 3957 aa3.69□□□□□ -1.82
CSDE1-218ENST00000610726 P0C880 135 aa3.68□□□□□ -1.82
CSDE1-218ENST00000610726 H0YAA0 97 aa3.67□□□□□ -1.82
CSDE1-218ENST00000610726 DNAH5Q8TE73 4624 aa3.67□□□□□ -1.82
CSDE1-218ENST00000610726 DNAH11Q96DT5 4516 aa3.66□□□□□ -1.82
CSDE1-218ENST00000610726 MT1HL1P0DM35 61 aa3.65□□□□□ -1.83
CSDE1-218ENST00000610726 KRTAP10-4P60372 401 aaPredicted RBP3.64□□□□□ -1.83
CSDE1-218ENST00000610726 KRTAP4-5Q9BYR2 181 aa3.64□□□□□ -1.83
CSDE1-218ENST00000610726 DNAH1Q9P2D7 4330 aa3.63□□□□□ -1.83
CSDE1-218ENST00000610726 KRTAP25-1Q3LHN0 102 aa3.63□□□□□ -1.83
CSDE1-218ENST00000610726 KRTAP3-1Q9BYR8 98 aa3.63□□□□□ -1.83
CSDE1-218ENST00000610726 DNAH10Q8IVF4 4471 aa3.62□□□□□ -1.83
CSDE1-218ENST00000610726 PRKDCP78527 4128 aaKnown RBP3.62□□□□□ -1.83
CSDE1-218ENST00000610726 KRTAP10-10P60014 251 aa3.62□□□□□ -1.83
CSDE1-218ENST00000610726 STARD9Q9P2P6 4700 aa3.61□□□□□ -1.83
CSDE1-218ENST00000610726 TNP1P09430 55 aa3.58□□□□□ -1.84
CSDE1-218ENST00000610726 FAT1Q14517 4588 aa3.58□□□□□ -1.84
CSDE1-218ENST00000610726 C10orf95Q9H7T3 257 aa3.58□□□□□ -1.84
CSDE1-218ENST00000610726 VPS13DQ5THJ4 4388 aa3.57□□□□□ -1.84
CSDE1-218ENST00000610726 CMYA5Q8N3K9 4069 aa3.57□□□□□ -1.84
CSDE1-218ENST00000610726 DYNC1H1Q14204 4646 aaKnown RBP3.54□□□□□ -1.84
CSDE1-218ENST00000610726 ALMS1Q8TCU4 4167 aa3.53□□□□□ -1.84
CSDE1-218ENST00000610726 LRP1BQ9NZR2 4599 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms