RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.97□□□□□ -1.29
CLN3-238ENST00000569430 KRTAP11-1Q8IUC1 163 aa6.96□□□□□ -1.3
CLN3-238ENST00000569430 ZNF861PO60384 105 aa6.96□□□□□ -1.3
CLN3-238ENST00000569430 UQCR11O14957 56 aa6.95□□□□□ -1.3
CLN3-238ENST00000569430 FAM229AH3BQW9 127 aa6.95□□□□□ -1.3
CLN3-238ENST00000569430 MIR22HGQ0VDD5 57 aa6.95□□□□□ -1.3
CLN3-238ENST00000569430 LYSTQ99698 3801 aa6.94□□□□□ -1.3
CLN3-238ENST00000569430 SPRR1BP22528 89 aa6.93□□□□□ -1.3
CLN3-238ENST00000569430 C1orf134Q5TEV5 83 aa6.93□□□□□ -1.3
CLN3-238ENST00000569430 PANO1I0J062 215 aa6.91□□□□□ -1.3
CLN3-238ENST00000569430 K7ERS5 55 aa6.91□□□□□ -1.3
CLN3-238ENST00000569430 APLNQ9ULZ1 77 aa6.91□□□□□ -1.3
CLN3-238ENST00000569430 A0A087WTM6 91 aa6.9□□□□□ -1.31
CLN3-238ENST00000569430 A0A087X002 238 aa6.89□□□□□ -1.31
CLN3-238ENST00000569430 NOTCH2NLQ7Z3S9 236 aa6.89□□□□□ -1.31
CLN3-238ENST00000569430 TGP01266 2768 aa6.89□□□□□ -1.31
CLN3-238ENST00000569430 Q96NJ1 140 aa6.87□□□□□ -1.31
CLN3-238ENST00000569430 FLG2Q5D862 2391 aaPredicted RBP6.86□□□□□ -1.31
CLN3-238ENST00000569430 Q8N1X5 172 aa6.84□□□□□ -1.31
CLN3-238ENST00000569430 IGLV7-43P04211 117 aa6.83□□□□□ -1.32
CLN3-238ENST00000569430 SSBP3-AS1Q7Z2R9 100 aa6.83□□□□□ -1.32
CLN3-238ENST00000569430 WWC2-AS2Q96NR7 200 aa6.83□□□□□ -1.32
CLN3-238ENST00000569430 A6NN06 94 aa6.82□□□□□ -1.32
CLN3-238ENST00000569430 Q5W150 140 aa6.82□□□□□ -1.32
CLN3-238ENST00000569430 DNAH10Q8IVF4 4471 aa6.82□□□□□ -1.32
CLN3-238ENST00000569430 Q6ZR54 194 aa6.82□□□□□ -1.32
CLN3-238ENST00000569430 LINC01554Q52M75 96 aa6.78□□□□□ -1.32
CLN3-238ENST00000569430 TYMSOSQ8TAI1 123 aa6.78□□□□□ -1.32
CLN3-238ENST00000569430 PLA2G1BP04054 148 aaKnown RBP6.77□□□□□ -1.33
CLN3-238ENST00000569430 ADM2Q7Z4H4 148 aa6.77□□□□□ -1.33
CLN3-238ENST00000569430 CSAG1Q6PB30 78 aa6.74□□□□□ -1.33
CLN3-238ENST00000569430 C9orf92A6NGG3 77 aa6.71□□□□□ -1.34
CLN3-238ENST00000569430 DMAC1Q96GE9 116 aa6.7□□□□□ -1.34
CLN3-238ENST00000569430 LINC00483Q53H64 154 aa6.69□□□□□ -1.34
CLN3-238ENST00000569430 CMYA5Q8N3K9 4069 aa6.68□□□□□ -1.34
CLN3-238ENST00000569430 PLAC8Q9NZF1 115 aa6.68□□□□□ -1.34
CLN3-238ENST00000569430 HUWE1Q7Z6Z7 4374 aaKnown RBP6.68□□□□□ -1.34
CLN3-238ENST00000569430 H3BS24 57 aa6.68□□□□□ -1.34
CLN3-238ENST00000569430 DNAH7Q8WXX0 4024 aa6.67□□□□□ -1.34
CLN3-238ENST00000569430 KRTAP13-1Q8IUC0 172 aa6.67□□□□□ -1.34
CLN3-238ENST00000569430 CRIPTQ9P021 101 aa6.65□□□□□ -1.34
CLN3-238ENST00000569430 FBN3Q75N90 2809 aa6.64□□□□□ -1.35
CLN3-238ENST00000569430 DNAH9Q9NYC9 4486 aa6.63□□□□□ -1.35
CLN3-238ENST00000569430 MEGF8Q7Z7M0 2845 aa6.61□□□□□ -1.35
CLN3-238ENST00000569430 SMR3BP02814 79 aaPredicted RBP6.61□□□□□ -1.35
CLN3-238ENST00000569430 SPATA8Q6RVD6 105 aa6.61□□□□□ -1.35
CLN3-238ENST00000569430 LINC00304Q8N9R0 145 aa6.6□□□□□ -1.35
CLN3-238ENST00000569430 SPINT4Q6UDR6 99 aa6.6□□□□□ -1.35
CLN3-238ENST00000569430 A0A1B0GU33 70 aa6.59□□□□□ -1.35
CLN3-238ENST00000569430 Q6ZRN7 208 aaPredicted RBP6.59□□□□□ -1.35
CLN3-238ENST00000569430 A0A0D9SG42 100 aa6.58□□□□□ -1.36
CLN3-238ENST00000569430 PLECQ15149 4684 aaKnown RBP6.56□□□□□ -1.36
CLN3-238ENST00000569430 ASB16-AS1Q495Z4 193 aa6.56□□□□□ -1.36
CLN3-238ENST00000569430 KRTAP10-2P60368 255 aa6.53□□□□□ -1.36
CLN3-238ENST00000569430 STARD9Q9P2P6 4700 aa6.49□□□□□ -1.37
CLN3-238ENST00000569430 DNAH3Q8TD57 4116 aa6.49□□□□□ -1.37
CLN3-238ENST00000569430 KMT2AQ03164 3969 aa6.48□□□□□ -1.37
CLN3-238ENST00000569430 PRKDCP78527 4128 aaKnown RBP6.48□□□□□ -1.37
CLN3-238ENST00000569430 DNHD1Q96M86 4753 aa6.48□□□□□ -1.37
CLN3-238ENST00000569430 KRTAP13-2Q52LG2 175 aa6.46□□□□□ -1.37
CLN3-238ENST00000569430 KRTAP10-1P60331 282 aa6.46□□□□□ -1.38
CLN3-238ENST00000569430 FRAS1Q86XX4 4008 aa6.45□□□□□ -1.38
CLN3-238ENST00000569430 DNAH1Q9P2D7 4330 aa6.45□□□□□ -1.38
CLN3-238ENST00000569430 H1FX-AS1Q4G0G2 97 aa6.39□□□□□ -1.39
CLN3-238ENST00000569430 KRTAP13-3Q3SY46 172 aa6.36□□□□□ -1.39
CLN3-238ENST00000569430 KRTAP25-1Q3LHN0 102 aa6.35□□□□□ -1.39
CLN3-238ENST00000569430 Q6ZSA8 131 aa6.33□□□□□ -1.4
CLN3-238ENST00000569430 DNAH6Q9C0G6 4158 aa6.3□□□□□ -1.4
CLN3-238ENST00000569430 RPL37P61927 97 aaKnown RBP6.29□□□□□ -1.4
CLN3-238ENST00000569430 DNAH2Q9P225 4427 aa6.28□□□□□ -1.4
CLN3-238ENST00000569430 ROMO1P60602 79 aa6.28□□□□□ -1.4
CLN3-238ENST00000569430 VPS13DQ5THJ4 4388 aa6.28□□□□□ -1.4
CLN3-238ENST00000569430 DNAH11Q96DT5 4516 aa6.28□□□□□ -1.4
CLN3-238ENST00000569430 H0YAA0 97 aa6.27□□□□□ -1.41
CLN3-238ENST00000569430 KRTAP16-1A8MUX0 517 aa6.26□□□□□ -1.41
CLN3-238ENST00000569430 HECTD4Q9Y4D8 3996 aa6.24□□□□□ -1.41
CLN3-238ENST00000569430 DNAH17Q9UFH2 4485 aa6.24□□□□□ -1.41
CLN3-238ENST00000569430 COX6B2Q6YFQ2 88 aa6.24□□□□□ -1.41
CLN3-238ENST00000569430 DNAH8Q96JB1 4490 aa6.24□□□□□ -1.41
CLN3-238ENST00000569430 A8MUU9 505 aa6.24□□□□□ -1.41
CLN3-238ENST00000569430 KRTAP1-4P0C5Y4 121 aa6.22□□□□□ -1.41
CLN3-238ENST00000569430 HYDINQ4G0P3 5121 aa6.19□□□□□ -1.42
CLN3-238ENST00000569430 S4R3F8 94 aa6.18□□□□□ -1.42
CLN3-238ENST00000569430 LRP1BQ9NZR2 4599 aa6.17□□□□□ -1.42
CLN3-238ENST00000569430 C10orf95Q9H7T3 257 aa6.11□□□□□ -1.43
CLN3-238ENST00000569430 NDUFAF8A1L188 74 aa6.11□□□□□ -1.43
CLN3-238ENST00000569430 DYNC2H1Q8NCM8 4307 aaKnown RBP6.08□□□□□ -1.44
CLN3-238ENST00000569430 C20orf166-AS1Q96NR2 134 aa6.08□□□□□ -1.44
CLN3-238ENST00000569430 PKHD1P08F94 4074 aa6.08□□□□□ -1.44
CLN3-238ENST00000569430 DNAH5Q8TE73 4624 aa6.07□□□□□ -1.44
CLN3-238ENST00000569430 FAT2Q9NYQ8 4349 aa6.06□□□□□ -1.44
CLN3-238ENST00000569430 RPS29P62273 56 aaKnown RBP6.05□□□□□ -1.44
CLN3-238ENST00000569430 VPS13BQ7Z7G8 4022 aa6.04□□□□□ -1.44
CLN3-238ENST00000569430 FAT1Q14517 4588 aa6.04□□□□□ -1.44
CLN3-238ENST00000569430 ALMS1Q8TCU4 4167 aa6.02□□□□□ -1.45
CLN3-238ENST00000569430 R4GN34 69 aa5.99□□□□□ -1.45
CLN3-238ENST00000569430 KRTAP3-1Q9BYR8 98 aa5.99□□□□□ -1.45
CLN3-238ENST00000569430 M0QZ58 72 aa5.97□□□□□ -1.45
CLN3-238ENST00000569430 LUZP6Q538Z0 58 aa5.95□□□□□ -1.46
CLN3-238ENST00000569430 KRTAP21-3Q3LHN1 58 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 98.1 ms