RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 NISCHQ9Y2I1 1504 aa21.04■□□□□ 0.96
CLN3-238ENST00000569430 SUPT5HO00267 1087 aaKnown RBP19.31■□□□□ 0.68
CLN3-238ENST00000569430 SHROOM4Q9ULL8 1493 aa19.16■□□□□ 0.66
CLN3-238ENST00000569430 DCAF8L2P0C7V8 631 aa19.08■□□□□ 0.65
CLN3-238ENST00000569430 PCGF6Q9BYE7 350 aa18.76■□□□□ 0.59
CLN3-238ENST00000569430 HRCP23327 699 aa18.45■□□□□ 0.54
CLN3-238ENST00000569430 EHMT2Q96KQ7 1210 aa18.36■□□□□ 0.53
CLN3-238ENST00000569430 PPARGC1BQ86YN6 1023 aaKnown RBP18.33■□□□□ 0.52
CLN3-238ENST00000569430 CHIC1Q5VXU3 224 aa18.11■□□□□ 0.49
CLN3-238ENST00000569430 FAM9AQ8IZU1 332 aaPredicted RBP18.07■□□□□ 0.48
CLN3-238ENST00000569430 LOC105371045A0A1W2PR82 267 aa18.03■□□□□ 0.48
CLN3-238ENST00000569430 PELP1Q8IZL8 1130 aaKnown RBP17.93■□□□□ 0.46
CLN3-238ENST00000569430 TRIM26Q12899 539 aaPredicted RBP17.86■□□□□ 0.45
CLN3-238ENST00000569430 ZEB1P37275 1124 aaPredicted RBP17.84■□□□□ 0.45
CLN3-238ENST00000569430 TTBK1Q5TCY1 1321 aaPredicted RBP17.81■□□□□ 0.44
CLN3-238ENST00000569430 TRIM41Q8WV44 630 aa17.72■□□□□ 0.43
CLN3-238ENST00000569430 ZCCHC6Q5VYS8 1495 aaKnown RBP17.7■□□□□ 0.42
CLN3-238ENST00000569430 CCER1Q8TC90 406 aaPredicted RBP17.68■□□□□ 0.42
CLN3-238ENST00000569430 CENPBP07199 599 aaPredicted RBP17.61■□□□□ 0.41
CLN3-238ENST00000569430 MYO15BQ96JP2 1530 aa17.54■□□□□ 0.4
CLN3-238ENST00000569430 YTHDC1Q96MU7 727 aaKnown RBP17.51■□□□□ 0.39
CLN3-238ENST00000569430 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.4■□□□□ 0.38
CLN3-238ENST00000569430 CCDC180Q9P1Z9 1646 aa17.4■□□□□ 0.38
CLN3-238ENST00000569430 SCAF1Q9H7N4 1312 aaKnown RBP17.31■□□□□ 0.36
CLN3-238ENST00000569430 GTF3C3Q9Y5Q9 886 aa17.28■□□□□ 0.36
CLN3-238ENST00000569430 MYT1Q01538 1121 aa17.27■□□□□ 0.36
CLN3-238ENST00000569430 DIEXFQ68CQ4 756 aaKnown RBP17.25■□□□□ 0.35
CLN3-238ENST00000569430 DCAF1Q9Y4B6 1507 aa17.19■□□□□ 0.34
CLN3-238ENST00000569430 RANGAP1P46060 587 aaPredicted RBP17.19■□□□□ 0.34
CLN3-238ENST00000569430 ACIN1Q9UKV3 1341 aaKnown RBP17.17■□□□□ 0.34
CLN3-238ENST00000569430 APLP2Q06481 763 aa17.17■□□□□ 0.34
CLN3-238ENST00000569430 ABCC9O60706 1549 aa17.15■□□□□ 0.34
CLN3-238ENST00000569430 UBTFP17480 764 aaKnown RBP17.15■□□□□ 0.34
CLN3-238ENST00000569430 NEUROD1Q13562 356 aa17.09■□□□□ 0.33
CLN3-238ENST00000569430 SCRIBQ14160 1630 aa17.08■□□□□ 0.33
CLN3-238ENST00000569430 HNRNPUL2Q1KMD3 747 aaKnown RBP17.01■□□□□ 0.31
CLN3-238ENST00000569430 RSF1Q96T23 1441 aaPredicted RBP16.86■□□□□ 0.29
CLN3-238ENST00000569430 ZNF316A6NFI3 1004 aaPredicted RBP16.82■□□□□ 0.28
CLN3-238ENST00000569430 CECR2Q9BXF3 1484 aa16.78■□□□□ 0.28
CLN3-238ENST00000569430 PABPN1Q86U42 306 aaKnown RBP eCLIP16.74■□□□□ 0.27
CLN3-238ENST00000569430 RB1CC1Q8TDY2 1594 aa16.71■□□□□ 0.26
CLN3-238ENST00000569430 ITGAEP38570 1179 aa16.69■□□□□ 0.26
CLN3-238ENST00000569430 NEFLP07196 543 aa16.67■□□□□ 0.26
CLN3-238ENST00000569430 ERICH6Q7L0X2 663 aa16.67■□□□□ 0.26
CLN3-238ENST00000569430 BCANQ96GW7 911 aa16.65■□□□□ 0.26
CLN3-238ENST00000569430 MIER1Q8N108 512 aa16.62■□□□□ 0.25
CLN3-238ENST00000569430 MROH2BQ7Z745 1585 aa16.57■□□□□ 0.24
CLN3-238ENST00000569430 ATP1B4Q9UN42 357 aaPredicted RBP16.57■□□□□ 0.24
CLN3-238ENST00000569430 WIZO95785 1651 aa16.46■□□□□ 0.23
CLN3-238ENST00000569430 CSRNP3Q8WYN3 585 aa16.45■□□□□ 0.22
CLN3-238ENST00000569430 NACADO15069 1562 aa16.32■□□□□ 0.2
CLN3-238ENST00000569430 ABCC8Q09428 1581 aa16.31■□□□□ 0.2
CLN3-238ENST00000569430 FKBP8Q14318 412 aa16.29■□□□□ 0.2
CLN3-238ENST00000569430 CNGB1Q14028 1251 aaPredicted RBP16.25■□□□□ 0.19
CLN3-238ENST00000569430 CCDC88BA6NC98 1476 aa16.23■□□□□ 0.19
CLN3-238ENST00000569430 SOGA1O94964 1423 aa16.23■□□□□ 0.19
CLN3-238ENST00000569430 CEP162Q5TB80 1403 aa16.22■□□□□ 0.19
CLN3-238ENST00000569430 FAM50AQ14320 339 aaKnown RBP16.19■□□□□ 0.18
CLN3-238ENST00000569430 DDX10Q13206 875 aaKnown RBP16.19■□□□□ 0.18
CLN3-238ENST00000569430 SUPT16HQ9Y5B9 1047 aaKnown RBP16.19■□□□□ 0.18
CLN3-238ENST00000569430 RUSC2Q8N2Y8 1516 aa16.16■□□□□ 0.18
CLN3-238ENST00000569430 TRIM52Q96A61 297 aa16.15■□□□□ 0.18
CLN3-238ENST00000569430 CLSPNQ9HAW4 1339 aa16.14■□□□□ 0.17
CLN3-238ENST00000569430 ANP32EQ9BTT0 268 aa16.14■□□□□ 0.17
CLN3-238ENST00000569430 ANP32CO43423 234 aa16.13■□□□□ 0.17
CLN3-238ENST00000569430 BAZ1AQ9NRL2 1556 aaPredicted RBP16.11■□□□□ 0.17
CLN3-238ENST00000569430 HIRIP3Q9BW71 556 aaPredicted RBP16.1■□□□□ 0.17
CLN3-238ENST00000569430 POLR3GLQ9BT43 218 aa16.09■□□□□ 0.17
CLN3-238ENST00000569430 CDK11AQ9UQ88 783 aaPredicted RBP16.08■□□□□ 0.16
CLN3-238ENST00000569430 TNIKQ9UKE5 1360 aa16.03■□□□□ 0.16
CLN3-238ENST00000569430 CLIP1P30622 1438 aa16.02■□□□□ 0.15
CLN3-238ENST00000569430 IRX6P78412 446 aaPredicted RBP16.01■□□□□ 0.15
CLN3-238ENST00000569430 TSHZ2Q9NRE2 1034 aa15.99■□□□□ 0.15
CLN3-238ENST00000569430 BCL11AQ9H165 835 aa15.98■□□□□ 0.15
CLN3-238ENST00000569430 SMARCA4P51532 1647 aa15.97■□□□□ 0.15
CLN3-238ENST00000569430 P3H3Q8IVL6 736 aa15.96■□□□□ 0.15
CLN3-238ENST00000569430 HNRNPUQ00839 825 aaKnown RBP eCLIP15.95■□□□□ 0.14
CLN3-238ENST00000569430 TOP2AP11388 1531 aaKnown RBP15.94■□□□□ 0.14
CLN3-238ENST00000569430 SMARCA2P51531 1590 aa15.94■□□□□ 0.14
CLN3-238ENST00000569430 RTL5Q5HYW3 569 aaPredicted RBP15.93■□□□□ 0.14
CLN3-238ENST00000569430 WRNQ14191 1432 aaPredicted RBP eCLIP15.91■□□□□ 0.14
CLN3-238ENST00000569430 GOLGA3Q08378 1498 aa15.9■□□□□ 0.14
CLN3-238ENST00000569430 KCNH8Q96L42 1107 aa15.89■□□□□ 0.13
CLN3-238ENST00000569430 RBM19Q9Y4C8 960 aaKnown RBP15.84■□□□□ 0.13
CLN3-238ENST00000569430 NBR1Q14596 966 aa15.84■□□□□ 0.13
CLN3-238ENST00000569430 SIN3AQ96ST3 1273 aa15.83■□□□□ 0.13
CLN3-238ENST00000569430 EEA1Q15075 1411 aa15.83■□□□□ 0.12
CLN3-238ENST00000569430 UNC13AQ9UPW8 1703 aa15.82■□□□□ 0.12
CLN3-238ENST00000569430 FAM9BQ8IZU0 186 aa15.81■□□□□ 0.12
CLN3-238ENST00000569430 BAZ1BQ9UIG0 1483 aaKnown RBP15.78■□□□□ 0.12
CLN3-238ENST00000569430 EIF4G1Q04637 1599 aaKnown RBP15.77■□□□□ 0.11
CLN3-238ENST00000569430 TONSLQ96HA7 1378 aa15.76■□□□□ 0.11
CLN3-238ENST00000569430 KANK4Q5T7N3 995 aaPredicted RBP15.76■□□□□ 0.11
CLN3-238ENST00000569430 DAXXQ9UER7 740 aaPredicted RBP15.75■□□□□ 0.11
CLN3-238ENST00000569430 BICRAQ9NZM4 1560 aa15.75■□□□□ 0.11
CLN3-238ENST00000569430 NPM2Q86SE8 214 aaKnown RBP15.73■□□□□ 0.11
CLN3-238ENST00000569430 ZNF326Q5BKZ1 582 aaKnown RBP15.73■□□□□ 0.11
CLN3-238ENST00000569430 RAPGEF2Q9Y4G8 1499 aa15.73■□□□□ 0.11
CLN3-238ENST00000569430 CEP164Q9UPV0 1460 aa15.72■□□□□ 0.11
CLN3-238ENST00000569430 ATAD2BQ9ULI0 1458 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms