RNA–Protein interactions for RNA: ENST00000558093.1

SPG11-206, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-206ENST00000558093 MKI67P46013 3256 aaKnown RBP0.71□□□□□ -2.3
SPG11-206ENST00000558093 EYSQ5T1H1 3165 aa0.71□□□□□ -2.3
SPG11-206ENST00000558093 K7EIM0 57 aa0.71□□□□□ -2.3
SPG11-206ENST00000558093 TMEM167AQ8TBQ9 72 aa0.71□□□□□ -2.3
SPG11-206ENST00000558093 NBASA2RRP1 2371 aa0.71□□□□□ -2.3
SPG11-206ENST00000558093 PDZD2O15018 2839 aa0.71□□□□□ -2.3
SPG11-206ENST00000558093 RANBP2P49792 3224 aaKnown RBP0.71□□□□□ -2.3
SPG11-206ENST00000558093 CHD6Q8TD26 2715 aa0.71□□□□□ -2.3
SPG11-206ENST00000558093 NAV2Q8IVL1 2488 aa0.71□□□□□ -2.3
SPG11-206ENST00000558093 RPL39P5Q59GN2 51 aa0.7□□□□□ -2.3
SPG11-206ENST00000558093 HECTD1Q9ULT8 2610 aa0.7□□□□□ -2.3
SPG11-206ENST00000558093 SPTBN4Q9H254 2564 aa0.7□□□□□ -2.3
SPG11-206ENST00000558093 LAMA3Q16787 3333 aa0.7□□□□□ -2.3
SPG11-206ENST00000558093 ANK2Q01484 3957 aa0.69□□□□□ -2.3
SPG11-206ENST00000558093 H0YGG7 62 aa0.69□□□□□ -2.3
SPG11-206ENST00000558093 DEFB135Q30KP9 77 aa0.69□□□□□ -2.3
SPG11-206ENST00000558093 PRKDCP78527 4128 aaKnown RBP0.69□□□□□ -2.3
SPG11-206ENST00000558093 LYSTQ99698 3801 aa0.69□□□□□ -2.3
SPG11-206ENST00000558093 SACSQ9NZJ4 4579 aa0.69□□□□□ -2.3
SPG11-206ENST00000558093 MAST4O15021 2626 aa0.68□□□□□ -2.3
SPG11-206ENST00000558093 TENM4Q6N022 2769 aa0.68□□□□□ -2.3
SPG11-206ENST00000558093 FRYQ5TBA9 3013 aa0.68□□□□□ -2.3
SPG11-206ENST00000558093 DCHS1Q96JQ0 3298 aa0.68□□□□□ -2.3
SPG11-206ENST00000558093 DEFB108AA8MXU0 73 aa0.68□□□□□ -2.3
SPG11-206ENST00000558093 USP34Q70CQ2 3546 aa0.68□□□□□ -2.3
SPG11-206ENST00000558093 NOTCH1P46531 2555 aa0.68□□□□□ -2.3
SPG11-206ENST00000558093 MUC5BQ9HC84 5762 aaPredicted RBP0.68□□□□□ -2.3
SPG11-206ENST00000558093 CRYBG3Q68DQ2 2970 aa0.68□□□□□ -2.3
SPG11-206ENST00000558093 DNAH14Q0VDD8 3507 aa0.68□□□□□ -2.3
SPG11-206ENST00000558093 DCHS2Q6V1P9 2916 aa0.68□□□□□ -2.3
SPG11-206ENST00000558093 BDP1A6H8Y1 2624 aa0.68□□□□□ -2.3
SPG11-206ENST00000558093 LAMA2P24043 3122 aaKnown RBP0.67□□□□□ -2.3
SPG11-206ENST00000558093 FAT2Q9NYQ8 4349 aa0.67□□□□□ -2.3
SPG11-206ENST00000558093 CENPFP49454 3210 aa0.67□□□□□ -2.3
SPG11-206ENST00000558093 MYCBP2O75592 4640 aa0.67□□□□□ -2.3
SPG11-206ENST00000558093 PRUNE2Q8WUY3 3088 aa0.67□□□□□ -2.3
SPG11-206ENST00000558093 DMBT1Q9UGM3 2413 aaPredicted RBP0.66□□□□□ -2.3
SPG11-206ENST00000558093 AHNAK2Q8IVF2 5795 aa0.66□□□□□ -2.3
SPG11-206ENST00000558093 PIEZO1Q92508 2521 aa0.66□□□□□ -2.3
SPG11-206ENST00000558093 CFAP47Q6ZTR5 3102 aa0.66□□□□□ -2.3
SPG11-206ENST00000558093 M0R2T5 61 aa0.66□□□□□ -2.3
SPG11-206ENST00000558093 DMDP11532 3685 aa0.66□□□□□ -2.3
SPG11-206ENST00000558093 HTTP42858 3142 aa0.66□□□□□ -2.3
SPG11-206ENST00000558093 ZZEF1O43149 2961 aa0.66□□□□□ -2.3
SPG11-206ENST00000558093 DNAH8Q96JB1 4490 aa0.66□□□□□ -2.3
SPG11-206ENST00000558093 CHD8Q9HCK8 2581 aa0.65□□□□□ -2.3
SPG11-206ENST00000558093 XIRP2A4UGR9 3374 aa0.65□□□□□ -2.3
SPG11-206ENST00000558093 CDH23Q9H251 3354 aa0.65□□□□□ -2.3
SPG11-206ENST00000558093 TENM3Q9P273 2699 aa0.65□□□□□ -2.3
SPG11-206ENST00000558093 SPENQ96T58 3664 aaKnown RBP0.65□□□□□ -2.31
SPG11-206ENST00000558093 DYNC2H1Q8NCM8 4307 aaKnown RBP0.65□□□□□ -2.31
SPG11-206ENST00000558093 M0QZ58 72 aa0.65□□□□□ -2.31
SPG11-206ENST00000558093 RELNP78509 3460 aa0.65□□□□□ -2.31
SPG11-206ENST00000558093 SETD2Q9BYW2 2564 aaPredicted RBP0.65□□□□□ -2.31
SPG11-206ENST00000558093 EPG5Q9HCE0 2579 aa0.65□□□□□ -2.31
SPG11-206ENST00000558093 AHNAKQ09666 5890 aaKnown RBP0.65□□□□□ -2.31
SPG11-206ENST00000558093 ASPMQ8IZT6 3477 aa0.65□□□□□ -2.31
SPG11-206ENST00000558093 MYO15AQ9UKN7 3530 aa0.64□□□□□ -2.31
SPG11-206ENST00000558093 NBPF19A0A087WUL8 3843 aa0.64□□□□□ -2.31
SPG11-206ENST00000558093 FRAS1Q86XX4 4008 aa0.64□□□□□ -2.31
SPG11-206ENST00000558093 SPEGQ15772 3267 aa0.64□□□□□ -2.31
SPG11-206ENST00000558093 SPINK6Q6UWN8 80 aa0.64□□□□□ -2.31
SPG11-206ENST00000558093 SMR3AQ99954 134 aa0.64□□□□□ -2.31
SPG11-206ENST00000558093 ZNF469Q96JG9 3925 aaPredicted RBP0.64□□□□□ -2.31
SPG11-206ENST00000558093 VPS13BQ7Z7G8 4022 aa0.64□□□□□ -2.31
SPG11-206ENST00000558093 GCN1Q92616 2671 aaKnown RBP0.64□□□□□ -2.31
SPG11-206ENST00000558093 SMG1Q96Q15 3661 aaKnown RBP0.64□□□□□ -2.31
SPG11-206ENST00000558093 DNAH2Q9P225 4427 aa0.64□□□□□ -2.31
SPG11-206ENST00000558093 USP24Q9UPU5 2620 aa0.64□□□□□ -2.31
SPG11-206ENST00000558093 COL12A1Q99715 3063 aa0.63□□□□□ -2.31
SPG11-206ENST00000558093 MYO18BQ8IUG5 2567 aa0.63□□□□□ -2.31
SPG11-206ENST00000558093 KMT2AQ03164 3969 aa0.63□□□□□ -2.31
SPG11-206ENST00000558093 DNHD1Q96M86 4753 aa0.63□□□□□ -2.31
SPG11-206ENST00000558093 ANKRD11Q6UB99 2663 aaPredicted RBP0.63□□□□□ -2.31
SPG11-206ENST00000558093 NF1P21359 2839 aa0.63□□□□□ -2.31
SPG11-206ENST00000558093 APCP25054 2843 aa0.63□□□□□ -2.31
SPG11-206ENST00000558093 APC2O95996 2303 aa0.63□□□□□ -2.31
SPG11-206ENST00000558093 PKD1L1Q8TDX9 2849 aa0.62□□□□□ -2.31
SPG11-206ENST00000558093 FLNBO75369 2602 aaKnown RBP0.62□□□□□ -2.31
SPG11-206ENST00000558093 HIVEP3Q5T1R4 2406 aa0.62□□□□□ -2.31
SPG11-206ENST00000558093 CFAP54Q96N23 3096 aa0.62□□□□□ -2.31
SPG11-206ENST00000558093 FLNCQ14315 2725 aa0.62□□□□□ -2.31
SPG11-206ENST00000558093 TEP1Q99973 2627 aaKnown RBP0.62□□□□□ -2.31
SPG11-206ENST00000558093 C5orf42Q9H799 3197 aa0.61□□□□□ -2.31
SPG11-206ENST00000558093 PTPN13Q12923 2485 aa0.61□□□□□ -2.31
SPG11-206ENST00000558093 WDFY3Q8IZQ1 3526 aa0.61□□□□□ -2.31
SPG11-206ENST00000558093 WDFY4Q6ZS81 3184 aa0.61□□□□□ -2.31
SPG11-206ENST00000558093 H3BNG1 76 aa0.61□□□□□ -2.31
SPG11-206ENST00000558093 APELAP0DMC3 54 aa0.61□□□□□ -2.31
SPG11-206ENST00000558093 CELSR3Q9NYQ7 3312 aa0.61□□□□□ -2.31
SPG11-206ENST00000558093 PKHD1L1Q86WI1 4243 aa0.61□□□□□ -2.31
SPG11-206ENST00000558093 USP9XQ93008 2570 aaPredicted RBP0.61□□□□□ -2.31
SPG11-206ENST00000558093 ITPR1Q14643 2758 aa0.61□□□□□ -2.31
SPG11-206ENST00000558093 ANK3Q12955 4377 aaKnown RBP0.61□□□□□ -2.31
SPG11-206ENST00000558093 FASNP49327 2511 aaKnown RBP0.61□□□□□ -2.31
SPG11-206ENST00000558093 TNXBP22105 4242 aa0.6□□□□□ -2.31
SPG11-206ENST00000558093 DMXL1Q9Y485 3027 aa0.6□□□□□ -2.31
SPG11-206ENST00000558093 HSPG2P98160 4391 aa0.6□□□□□ -2.31
SPG11-206ENST00000558093 HUWE1Q7Z6Z7 4374 aaKnown RBP0.6□□□□□ -2.31
SPG11-206ENST00000558093 PRM1P04553 51 aa0.6□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms