RNA–Protein interactions for RNA: ENST00000556564.5

PTPN21-208, Transcript of protein tyrosine phosphatase, non-receptor type 21, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN21, Length 6,166 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN21-208ENST00000556564 Q1T7F1 81 aa9.84□□□□□ -0.83
PTPN21-208ENST00000556564 CYSTM1Q9H1C7 97 aa9.84□□□□□ -0.83
PTPN21-208ENST00000556564 ZANQ9Y493 2812 aa9.82□□□□□ -0.84
PTPN21-208ENST00000556564 DMAC1Q96GE9 116 aa9.82□□□□□ -0.84
PTPN21-208ENST00000556564 ASB16-AS1Q495Z4 193 aa9.81□□□□□ -0.84
PTPN21-208ENST00000556564 NBPF19A0A087WUL8 3843 aa9.81□□□□□ -0.84
PTPN21-208ENST00000556564 KRTAP29-1A8MX34 341 aaPredicted RBP9.78□□□□□ -0.84
PTPN21-208ENST00000556564 M0QZ58 72 aa9.78□□□□□ -0.84
PTPN21-208ENST00000556564 ADM2Q7Z4H4 148 aa9.78□□□□□ -0.84
PTPN21-208ENST00000556564 STAB2Q8WWQ8 2551 aa9.77□□□□□ -0.85
PTPN21-208ENST00000556564 LINC01558Q9Y6Z2 57 aa9.77□□□□□ -0.85
PTPN21-208ENST00000556564 ASH1LQ9NR48 2969 aaKnown RBP9.76□□□□□ -0.85
PTPN21-208ENST00000556564 LCA10Q71F78 164 aa9.75□□□□□ -0.85
PTPN21-208ENST00000556564 Q75L30 129 aa9.74□□□□□ -0.85
PTPN21-208ENST00000556564 ZFHX4Q86UP3 3567 aa9.73□□□□□ -0.85
PTPN21-208ENST00000556564 RPL37P61927 97 aaKnown RBP9.71□□□□□ -0.86
PTPN21-208ENST00000556564 H1FX-AS1Q4G0G2 97 aa9.69□□□□□ -0.86
PTPN21-208ENST00000556564 DCHS2Q6V1P9 2916 aa9.69□□□□□ -0.86
PTPN21-208ENST00000556564 FBN2P35556 2912 aa9.68□□□□□ -0.86
PTPN21-208ENST00000556564 Q5XG85 94 aa9.67□□□□□ -0.86
PTPN21-208ENST00000556564 MUC3AQ02505 3323 aa9.66□□□□□ -0.86
PTPN21-208ENST00000556564 PLAC4Q8WY50 150 aa9.65□□□□□ -0.86
PTPN21-208ENST00000556564 KTN1-AS1Q86SY8 53 aa9.63□□□□□ -0.87
PTPN21-208ENST00000556564 DCHS1Q96JQ0 3298 aa9.63□□□□□ -0.87
PTPN21-208ENST00000556564 NIPBLQ6KC79 2804 aaeCLIP9.63□□□□□ -0.87
PTPN21-208ENST00000556564 SPATA8Q6RVD6 105 aa9.58□□□□□ -0.88
PTPN21-208ENST00000556564 Q5VV11 94 aa9.56□□□□□ -0.88
PTPN21-208ENST00000556564 KRTAP1-4P0C5Y4 121 aa9.56□□□□□ -0.88
PTPN21-208ENST00000556564 C20orf166-AS1Q96NR2 134 aa9.56□□□□□ -0.88
PTPN21-208ENST00000556564 NF1P21359 2839 aa9.54□□□□□ -0.88
PTPN21-208ENST00000556564 DMBT1Q9UGM3 2413 aaPredicted RBP9.54□□□□□ -0.88
PTPN21-208ENST00000556564 PDZD2O15018 2839 aa9.51□□□□□ -0.89
PTPN21-208ENST00000556564 A8MUU9 505 aa9.48□□□□□ -0.89
PTPN21-208ENST00000556564 ANK3Q12955 4377 aaKnown RBP9.44□□□□□ -0.9
PTPN21-208ENST00000556564 A0A1B0GVY2 172 aa9.44□□□□□ -0.9
PTPN21-208ENST00000556564 XP32Q5T750 250 aa9.43□□□□□ -0.9
PTPN21-208ENST00000556564 CELSR1Q9NYQ6 3014 aa9.43□□□□□ -0.9
PTPN21-208ENST00000556564 FLG2Q5D862 2391 aaPredicted RBP9.4□□□□□ -0.91
PTPN21-208ENST00000556564 LUZP6Q538Z0 58 aa9.4□□□□□ -0.91
PTPN21-208ENST00000556564 TENM2Q9NT68 2774 aa9.39□□□□□ -0.91
PTPN21-208ENST00000556564 SMG1Q96Q15 3661 aaKnown RBP9.39□□□□□ -0.91
PTPN21-208ENST00000556564 MXRA5Q9NR99 2828 aa9.37□□□□□ -0.91
PTPN21-208ENST00000556564 ROMO1P60602 79 aa9.36□□□□□ -0.91
PTPN21-208ENST00000556564 PRAC1Q96KF2 57 aa9.36□□□□□ -0.91
PTPN21-208ENST00000556564 CSMD1Q96PZ7 3565 aa9.36□□□□□ -0.91
PTPN21-208ENST00000556564 BSNQ9UPA5 3926 aa9.29□□□□□ -0.92
PTPN21-208ENST00000556564 TPRXLQ17RH7 258 aa9.28□□□□□ -0.92
PTPN21-208ENST00000556564 SPENQ96T58 3664 aaKnown RBP9.28□□□□□ -0.92
PTPN21-208ENST00000556564 A8MU10 97 aa9.27□□□□□ -0.92
PTPN21-208ENST00000556564 ZFHX3Q15911 3703 aa9.27□□□□□ -0.93
PTPN21-208ENST00000556564 OTOGQ6ZRI0 2925 aa9.26□□□□□ -0.93
PTPN21-208ENST00000556564 TENM1Q9UKZ4 2725 aa9.21□□□□□ -0.94
PTPN21-208ENST00000556564 KRTAP13-3Q3SY46 172 aa9.16□□□□□ -0.94
PTPN21-208ENST00000556564 CSMD2Q7Z408 3487 aa9.16□□□□□ -0.94
PTPN21-208ENST00000556564 SVEP1Q4LDE5 3571 aa9.14□□□□□ -0.95
PTPN21-208ENST00000556564 KRTAP10-8P60410 259 aa9.11□□□□□ -0.95
PTPN21-208ENST00000556564 TENM3Q9P273 2699 aa9.11□□□□□ -0.95
PTPN21-208ENST00000556564 FBN1P35555 2871 aaKnown RBP9.09□□□□□ -0.95
PTPN21-208ENST00000556564 KRTAP16-1A8MUX0 517 aa9.07□□□□□ -0.96
PTPN21-208ENST00000556564 KRTAP10-10P60014 251 aa9.02□□□□□ -0.96
PTPN21-208ENST00000556564 PKD1L1Q8TDX9 2849 aa8.99□□□□□ -0.97
PTPN21-208ENST00000556564 TNP1P09430 55 aa8.91□□□□□ -0.98
PTPN21-208ENST00000556564 TRRAPQ9Y4A5 3859 aa8.9□□□□□ -0.98
PTPN21-208ENST00000556564 VWFP04275 2813 aa8.89□□□□□ -0.99
PTPN21-208ENST00000556564 HUWE1Q7Z6Z7 4374 aaKnown RBP8.84□□□□□ -0.99
PTPN21-208ENST00000556564 TGP01266 2768 aa8.77□□□□□ -1.01
PTPN21-208ENST00000556564 KRTAP25-1Q3LHN0 102 aa8.74□□□□□ -1.01
PTPN21-208ENST00000556564 A6NN06 94 aa8.72□□□□□ -1.01
PTPN21-208ENST00000556564 A0A0A0MQY5 61 aa8.69□□□□□ -1.02
PTPN21-208ENST00000556564 VPS13CQ709C8 3753 aa8.69□□□□□ -1.02
PTPN21-208ENST00000556564 P0C880 135 aa8.68□□□□□ -1.02
PTPN21-208ENST00000556564 CUBNO60494 3623 aa8.68□□□□□ -1.02
PTPN21-208ENST00000556564 AKAP9Q99996 3911 aa8.68□□□□□ -1.02
PTPN21-208ENST00000556564 PRO2289Q9P1D8 64 aa8.64□□□□□ -1.03
PTPN21-208ENST00000556564 ALMS1Q8TCU4 4167 aa8.63□□□□□ -1.03
PTPN21-208ENST00000556564 H0YAA0 97 aa8.63□□□□□ -1.03
PTPN21-208ENST00000556564 KRTAP4-5Q9BYR2 181 aa8.58□□□□□ -1.04
PTPN21-208ENST00000556564 H3BS24 57 aa8.57□□□□□ -1.04
PTPN21-208ENST00000556564 C10orf95Q9H7T3 257 aa8.56□□□□□ -1.04
PTPN21-208ENST00000556564 ZNF469Q96JG9 3925 aaPredicted RBP8.53□□□□□ -1.04
PTPN21-208ENST00000556564 MT1HL1P0DM35 61 aa8.51□□□□□ -1.05
PTPN21-208ENST00000556564 PP632Q6XCG6 107 aa8.42□□□□□ -1.06
PTPN21-208ENST00000556564 DNAH9Q9NYC9 4486 aa8.42□□□□□ -1.06
PTPN21-208ENST00000556564 FBN3Q75N90 2809 aa8.33□□□□□ -1.08
PTPN21-208ENST00000556564 KRTAP10-4P60372 401 aaPredicted RBP8.33□□□□□ -1.08
PTPN21-208ENST00000556564 KRTAP3-1Q9BYR8 98 aa8.33□□□□□ -1.08
PTPN21-208ENST00000556564 KRTAP12-2P59991 146 aa8.28□□□□□ -1.08
PTPN21-208ENST00000556564 COL7A1Q02388 2944 aa8.25□□□□□ -1.09
PTPN21-208ENST00000556564 MEGF8Q7Z7M0 2845 aa8.25□□□□□ -1.09
PTPN21-208ENST00000556564 NDUFAF8A1L188 74 aa8.21□□□□□ -1.09
PTPN21-208ENST00000556564 SRRM2Q9UQ35 2752 aaKnown RBP8.1□□□□□ -1.11
PTPN21-208ENST00000556564 KRTAP12-1P59990 96 aa8.09□□□□□ -1.11
PTPN21-208ENST00000556564 DNAH1Q9P2D7 4330 aa8.08□□□□□ -1.12
PTPN21-208ENST00000556564 CSMD3Q7Z407 3707 aa8.07□□□□□ -1.12
PTPN21-208ENST00000556564 KRTAP13-4Q3LI77 160 aa8.03□□□□□ -1.12
PTPN21-208ENST00000556564 PLECQ15149 4684 aaKnown RBP8□□□□□ -1.13
PTPN21-208ENST00000556564 KRTAP10-6P60371 365 aaPredicted RBP7.94□□□□□ -1.14
PTPN21-208ENST00000556564 DNAH5Q8TE73 4624 aa7.93□□□□□ -1.14
PTPN21-208ENST00000556564 VPS13DQ5THJ4 4388 aa7.87□□□□□ -1.15
PTPN21-208ENST00000556564 ANK2Q01484 3957 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms