RNA–Protein interactions for RNA: ENST00000544363.5

CCM2-219, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,620 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-219ENST00000544363 FAM236BA0A1B0GV22 79 aa17.26■□□□□ 0.35
CCM2-219ENST00000544363 A0A1B0GVX0 72 aa17.22■□□□□ 0.35
CCM2-219ENST00000544363 IGHV6-1A0A0B4J1U7 121 aa17.18■□□□□ 0.34
CCM2-219ENST00000544363 KRTAP29-1A8MX34 341 aaPredicted RBP17.17■□□□□ 0.34
CCM2-219ENST00000544363 HCG22E2RYF7 251 aa17.15■□□□□ 0.34
CCM2-219ENST00000544363 C8orf17Q9NRJ1 99 aa17.1■□□□□ 0.33
CCM2-219ENST00000544363 MMP24-AS1A0A0U1RRL7 71 aa17.1■□□□□ 0.33
CCM2-219ENST00000544363 ABCA13Q86UQ4 5058 aa17.1■□□□□ 0.33
CCM2-219ENST00000544363 WFDC13Q8IUB5 93 aa17.08■□□□□ 0.32
CCM2-219ENST00000544363 RETNLBQ9BQ08 111 aa17.07■□□□□ 0.32
CCM2-219ENST00000544363 DMBT1Q9UGM3 2413 aaPredicted RBP17.06■□□□□ 0.32
CCM2-219ENST00000544363 CASC2Q6XLA1 102 aa17.05■□□□□ 0.32
CCM2-219ENST00000544363 NOTCH2NLQ7Z3S9 236 aa17.05■□□□□ 0.32
CCM2-219ENST00000544363 C8orf87E5RJ46 101 aa17.03■□□□□ 0.32
CCM2-219ENST00000544363 ATOX1O00244 68 aa17.03■□□□□ 0.32
CCM2-219ENST00000544363 hDV103S1A0JD37 113 aa17.01■□□□□ 0.31
CCM2-219ENST00000544363 LINC00313P59037 77 aa16.99■□□□□ 0.31
CCM2-219ENST00000544363 ANAPC13Q9BS18 74 aa16.93■□□□□ 0.3
CCM2-219ENST00000544363 TMEM254Q8TBM7 123 aa16.92■□□□□ 0.3
CCM2-219ENST00000544363 J3QL48 77 aa16.9■□□□□ 0.3
CCM2-219ENST00000544363 FP248Q71RG6 208 aaPredicted RBP16.9■□□□□ 0.3
CCM2-219ENST00000544363 MRPL34Q9BQ48 92 aaKnown RBP16.89■□□□□ 0.29
CCM2-219ENST00000544363 SMIM20Q8N5G0 67 aa16.88■□□□□ 0.29
CCM2-219ENST00000544363 OCR1Q9BZK8 76 aa16.86■□□□□ 0.29
CCM2-219ENST00000544363 TRAV7A0A075B6U4 112 aa16.82■□□□□ 0.28
CCM2-219ENST00000544363 KRTAP16-1A8MUX0 517 aa16.82■□□□□ 0.28
CCM2-219ENST00000544363 SERP2Q8N6R1 65 aa16.81■□□□□ 0.28
CCM2-219ENST00000544363 PCP4P48539 62 aa16.81■□□□□ 0.28
CCM2-219ENST00000544363 IGLV7-46A0A075B6I9 117 aa16.77■□□□□ 0.27
CCM2-219ENST00000544363 C9orf92A6NGG3 77 aa16.77■□□□□ 0.27
CCM2-219ENST00000544363 NDUFS5O43920 106 aa16.74■□□□□ 0.27
CCM2-219ENST00000544363 Q8N9P0 234 aaPredicted RBP16.73■□□□□ 0.27
CCM2-219ENST00000544363 COX7CP15954 63 aa16.72■□□□□ 0.27
CCM2-219ENST00000544363 TP53AIP1Q9HCN2 124 aa16.7■□□□□ 0.26
CCM2-219ENST00000544363 PRR4Q16378 134 aa16.7■□□□□ 0.26
CCM2-219ENST00000544363 UQCRQO14949 82 aa16.68■□□□□ 0.26
CCM2-219ENST00000544363 KRTAP13-3Q3SY46 172 aa16.61■□□□□ 0.25
CCM2-219ENST00000544363 C5orf47Q569G3 176 aa16.59■□□□□ 0.25
CCM2-219ENST00000544363 CCDC179H3BU77 68 aa16.58■□□□□ 0.24
CCM2-219ENST00000544363 C20orf166-AS1Q96NR2 134 aa16.57■□□□□ 0.24
CCM2-219ENST00000544363 PCLOQ9Y6V0 5065 aa16.57■□□□□ 0.24
CCM2-219ENST00000544363 A8MUU9 505 aa16.55■□□□□ 0.24
CCM2-219ENST00000544363 TRAV22A0A0B4J277 110 aa16.52■□□□□ 0.24
CCM2-219ENST00000544363 H0Y9P7 68 aa16.51■□□□□ 0.23
CCM2-219ENST00000544363 TPRXLQ17RH7 258 aa16.5■□□□□ 0.23
CCM2-219ENST00000544363 C20orf197Q8N268 126 aa16.5■□□□□ 0.23
CCM2-219ENST00000544363 MP68P56378 58 aa16.48■□□□□ 0.23
CCM2-219ENST00000544363 Q5W150 140 aa16.48■□□□□ 0.23
CCM2-219ENST00000544363 Q75L30 129 aa16.46■□□□□ 0.23
CCM2-219ENST00000544363 XP32Q5T750 250 aa16.45■□□□□ 0.22
CCM2-219ENST00000544363 A0A0U1RQV1 116 aa16.42■□□□□ 0.22
CCM2-219ENST00000544363 SNURFQ9Y675 71 aa16.41■□□□□ 0.22
CCM2-219ENST00000544363 H3BPC8 53 aa16.4■□□□□ 0.22
CCM2-219ENST00000544363 KLKP1Q107X0 134 aa16.39■□□□□ 0.21
CCM2-219ENST00000544363 LINC00208Q96KT6 92 aa16.39■□□□□ 0.21
CCM2-219ENST00000544363 ZCCHC13Q8WW36 166 aaKnown RBP16.38■□□□□ 0.21
CCM2-219ENST00000544363 RPL37P61927 97 aaKnown RBP16.34■□□□□ 0.21
CCM2-219ENST00000544363 C1orf64Q8NEQ6 169 aa16.34■□□□□ 0.21
CCM2-219ENST00000544363 CYSTM1Q9H1C7 97 aa16.3■□□□□ 0.2
CCM2-219ENST00000544363 LOC101927531A0A1B0GV80 90 aa16.24■□□□□ 0.19
CCM2-219ENST00000544363 ATP11AUNQ6ZP68 121 aa16.23■□□□□ 0.19
CCM2-219ENST00000544363 LPAP08519 4548 aa16.22■□□□□ 0.19
CCM2-219ENST00000544363 NDUFC1O43677 76 aa16.18■□□□□ 0.18
CCM2-219ENST00000544363 IGKV2-30P06310 120 aa16.18■□□□□ 0.18
CCM2-219ENST00000544363 CYP4F30PQ9H0H9 118 aa16.16■□□□□ 0.18
CCM2-219ENST00000544363 H7BZZ5 65 aa16.15■□□□□ 0.18
CCM2-219ENST00000544363 HERC1Q15751 4861 aa16.14■□□□□ 0.17
CCM2-219ENST00000544363 IGKV2D-30A0A075B6S6 120 aa16.12■□□□□ 0.17
CCM2-219ENST00000544363 LRP2P98164 4655 aa16.07■□□□□ 0.16
CCM2-219ENST00000544363 PCOTHQ58A44 107 aa16.06■□□□□ 0.16
CCM2-219ENST00000544363 C7orf65Q6ZTY9 151 aa16.06■□□□□ 0.16
CCM2-219ENST00000544363 SPINK7P58062 85 aa15.98■□□□□ 0.15
CCM2-219ENST00000544363 TMEM258P61165 79 aa15.97■□□□□ 0.15
CCM2-219ENST00000544363 HMCN2Q8NDA2 5059 aa15.96■□□□□ 0.14
CCM2-219ENST00000544363 SEC61BP60468 96 aaKnown RBP15.94■□□□□ 0.14
CCM2-219ENST00000544363 HRES1P13985 223 aa15.88■□□□□ 0.13
CCM2-219ENST00000544363 SPANXA2-OT1Q8N9U9 137 aa15.88■□□□□ 0.13
CCM2-219ENST00000544363 FAM236DA0A1B0GTK5 79 aa15.83■□□□□ 0.13
CCM2-219ENST00000544363 FAM236CP0DP71 79 aa15.83■□□□□ 0.13
CCM2-219ENST00000544363 ATP5EP56381 51 aaPredicted RBP15.79■□□□□ 0.12
CCM2-219ENST00000544363 MUC17Q685J3 4493 aa15.77■□□□□ 0.11
CCM2-219ENST00000544363 C4orf26Q17RF5 130 aa15.71■□□□□ 0.11
CCM2-219ENST00000544363 DMAC1Q96GE9 116 aa15.61■□□□□ 0.09
CCM2-219ENST00000544363 KRTAP4-1Q9BYQ7 146 aa15.59■□□□□ 0.09
CCM2-219ENST00000544363 COX6B2Q6YFQ2 88 aa15.56■□□□□ 0.08
CCM2-219ENST00000544363 MPLKIPQ8TAP9 179 aa15.51■□□□□ 0.07
CCM2-219ENST00000544363 A8MUN3 132 aa15.5■□□□□ 0.07
CCM2-219ENST00000544363 ACYP2P14621 99 aa15.5■□□□□ 0.07
CCM2-219ENST00000544363 KRTAP3-1Q9BYR8 98 aa15.5■□□□□ 0.07
CCM2-219ENST00000544363 SERP1Q9Y6X1 66 aa15.47■□□□□ 0.07
CCM2-219ENST00000544363 RBM12B-AS1Q9P1G2 102 aa15.43■□□□□ 0.06
CCM2-219ENST00000544363 COA5Q86WW8 74 aa15.4■□□□□ 0.06
CCM2-219ENST00000544363 RPS28P62857 69 aaKnown RBP15.35■□□□□ 0.05
CCM2-219ENST00000544363 CHKB-CPT1BH3BT56 60 aa15.24■□□□□ 0.03
CCM2-219ENST00000544363 H1FX-AS1Q4G0G2 97 aa15.23■□□□□ 0.03
CCM2-219ENST00000544363 UBR4Q5T4S7 5183 aa15.19■□□□□ 0.02
CCM2-219ENST00000544363 MUC2Q02817 5179 aa15.18■□□□□ 0.02
CCM2-219ENST00000544363 KRTAP19-2Q3LHN2 52 aa15.15■□□□□ 0.02
CCM2-219ENST00000544363 RNF213Q63HN8 5207 aa15.1■□□□□ 0.01
CCM2-219ENST00000544363 S4R3F8 94 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 253.5 ms