RNA–Protein interactions for RNA: ENST00000541122.6

SMARCA4-207, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS P4 TSL 5 BASIC

Gene SMARCA4, Length 5,139 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-207ENST00000541122 FREM2Q5SZK8 3169 aa8.25□□□□□ -1.09
SMARCA4-207ENST00000541122 TEP1Q99973 2627 aaKnown RBP8.24□□□□□ -1.09
SMARCA4-207ENST00000541122 SPEGQ15772 3267 aa8.23□□□□□ -1.09
SMARCA4-207ENST00000541122 COL6A5A8TX70 2615 aa8.23□□□□□ -1.09
SMARCA4-207ENST00000541122 C20orf166-AS1Q96NR2 134 aa8.22□□□□□ -1.09
SMARCA4-207ENST00000541122 KRTAP21-3Q3LHN1 58 aa8.21□□□□□ -1.09
SMARCA4-207ENST00000541122 KALRNO60229 2985 aa8.18□□□□□ -1.1
SMARCA4-207ENST00000541122 CELSR3Q9NYQ7 3312 aa8.16□□□□□ -1.1
SMARCA4-207ENST00000541122 BOD1L1Q8NFC6 3051 aa8.14□□□□□ -1.11
SMARCA4-207ENST00000541122 DMDP11532 3685 aa8.14□□□□□ -1.11
SMARCA4-207ENST00000541122 ATMQ13315 3056 aa8.13□□□□□ -1.11
SMARCA4-207ENST00000541122 STAB2Q8WWQ8 2551 aa8.13□□□□□ -1.11
SMARCA4-207ENST00000541122 H0YAA0 97 aa8.13□□□□□ -1.11
SMARCA4-207ENST00000541122 NSD1Q96L73 2696 aaPredicted RBP8.12□□□□□ -1.11
SMARCA4-207ENST00000541122 PP632Q6XCG6 107 aa8.12□□□□□ -1.11
SMARCA4-207ENST00000541122 DCHS1Q96JQ0 3298 aa8.11□□□□□ -1.11
SMARCA4-207ENST00000541122 COL12A1Q99715 3063 aa8.08□□□□□ -1.12
SMARCA4-207ENST00000541122 TNP1P09430 55 aa8.07□□□□□ -1.12
SMARCA4-207ENST00000541122 APCP25054 2843 aa8.05□□□□□ -1.12
SMARCA4-207ENST00000541122 ZZEF1O43149 2961 aa8.05□□□□□ -1.12
SMARCA4-207ENST00000541122 ITPR2Q14571 2701 aa8.05□□□□□ -1.12
SMARCA4-207ENST00000541122 MAP1AP78559 2803 aaPredicted RBP8.02□□□□□ -1.12
SMARCA4-207ENST00000541122 UTP20O75691 2785 aaKnown RBP8.02□□□□□ -1.13
SMARCA4-207ENST00000541122 P0C880 135 aa8.01□□□□□ -1.13
SMARCA4-207ENST00000541122 LOC400499M0QZD8 3231 aa8.01□□□□□ -1.13
SMARCA4-207ENST00000541122 C10orf95Q9H7T3 257 aa8□□□□□ -1.13
SMARCA4-207ENST00000541122 HIVEP1P15822 2718 aa7.99□□□□□ -1.13
SMARCA4-207ENST00000541122 CFAP47Q6ZTR5 3102 aa7.95□□□□□ -1.14
SMARCA4-207ENST00000541122 KRTAP1-4P0C5Y4 121 aa7.95□□□□□ -1.14
SMARCA4-207ENST00000541122 TENM4Q6N022 2769 aa7.94□□□□□ -1.14
SMARCA4-207ENST00000541122 ASH1LQ9NR48 2969 aaKnown RBP7.94□□□□□ -1.14
SMARCA4-207ENST00000541122 ADGRG4Q8IZF6 3080 aa7.92□□□□□ -1.14
SMARCA4-207ENST00000541122 KRTAP13-3Q3SY46 172 aa7.9□□□□□ -1.15
SMARCA4-207ENST00000541122 LAMA5O15230 3695 aa7.86□□□□□ -1.15
SMARCA4-207ENST00000541122 LRBAP50851 2863 aa7.84□□□□□ -1.15
SMARCA4-207ENST00000541122 HRNRQ86YZ3 2850 aaPredicted RBP7.84□□□□□ -1.16
SMARCA4-207ENST00000541122 CELSR2Q9HCU4 2923 aa7.82□□□□□ -1.16
SMARCA4-207ENST00000541122 NIPBLQ6KC79 2804 aaeCLIP7.82□□□□□ -1.164e-6■□□□□ 9.9
SMARCA4-207ENST00000541122 WDFY3Q8IZQ1 3526 aa7.82□□□□□ -1.16
SMARCA4-207ENST00000541122 TACC2O95359 2948 aa7.81□□□□□ -1.16
SMARCA4-207ENST00000541122 XP32Q5T750 250 aa7.81□□□□□ -1.16
SMARCA4-207ENST00000541122 ASPMQ8IZT6 3477 aa7.8□□□□□ -1.16
SMARCA4-207ENST00000541122 PDZD2O15018 2839 aa7.77□□□□□ -1.16
SMARCA4-207ENST00000541122 FBN2P35556 2912 aa7.77□□□□□ -1.17
SMARCA4-207ENST00000541122 ZFHX4Q86UP3 3567 aa7.77□□□□□ -1.17
SMARCA4-207ENST00000541122 CRYBG3Q68DQ2 2970 aa7.73□□□□□ -1.17
SMARCA4-207ENST00000541122 RELNP78509 3460 aa7.72□□□□□ -1.17
SMARCA4-207ENST00000541122 KRTAP10-8P60410 259 aa7.7□□□□□ -1.18
SMARCA4-207ENST00000541122 SMG1Q96Q15 3661 aaKnown RBP7.64□□□□□ -1.19
SMARCA4-207ENST00000541122 DCHS2Q6V1P9 2916 aa7.64□□□□□ -1.19
SMARCA4-207ENST00000541122 ZANQ9Y493 2812 aa7.64□□□□□ -1.19
SMARCA4-207ENST00000541122 BSNQ9UPA5 3926 aa7.63□□□□□ -1.19
SMARCA4-207ENST00000541122 OTOGQ6ZRI0 2925 aa7.63□□□□□ -1.19
SMARCA4-207ENST00000541122 TPRXLQ17RH7 258 aa7.62□□□□□ -1.19
SMARCA4-207ENST00000541122 KRTAP12-2P59991 146 aa7.51□□□□□ -1.21
SMARCA4-207ENST00000541122 NBPF19A0A087WUL8 3843 aa7.5□□□□□ -1.21
SMARCA4-207ENST00000541122 TGP01266 2768 aa7.48□□□□□ -1.21
SMARCA4-207ENST00000541122 MXRA5Q9NR99 2828 aa7.46□□□□□ -1.22
SMARCA4-207ENST00000541122 CSMD1Q96PZ7 3565 aa7.45□□□□□ -1.22
SMARCA4-207ENST00000541122 KRTAP12-1P59990 96 aa7.43□□□□□ -1.22
SMARCA4-207ENST00000541122 KRTAP13-4Q3LI77 160 aa7.43□□□□□ -1.22
SMARCA4-207ENST00000541122 SPENQ96T58 3664 aaKnown RBP7.41□□□□□ -1.22
SMARCA4-207ENST00000541122 ANK3Q12955 4377 aaKnown RBP7.4□□□□□ -1.23
SMARCA4-207ENST00000541122 A0A1B0GVY2 172 aa7.37□□□□□ -1.23
SMARCA4-207ENST00000541122 KRTAP3-1Q9BYR8 98 aa7.36□□□□□ -1.23
SMARCA4-207ENST00000541122 NF1P21359 2839 aa7.34□□□□□ -1.23
SMARCA4-207ENST00000541122 PRO2289Q9P1D8 64 aa7.32□□□□□ -1.24
SMARCA4-207ENST00000541122 KRTAP10-10P60014 251 aa7.25□□□□□ -1.25
SMARCA4-207ENST00000541122 CELSR1Q9NYQ6 3014 aa7.24□□□□□ -1.25
SMARCA4-207ENST00000541122 FBN1P35555 2871 aaKnown RBP7.24□□□□□ -1.25
SMARCA4-207ENST00000541122 KRTAP10-6P60371 365 aaPredicted RBP7.24□□□□□ -1.25
SMARCA4-207ENST00000541122 TENM3Q9P273 2699 aa7.22□□□□□ -1.25
SMARCA4-207ENST00000541122 ZFHX3Q15911 3703 aa7.21□□□□□ -1.25
SMARCA4-207ENST00000541122 AKAP9Q99996 3911 aa7.2□□□□□ -1.26
SMARCA4-207ENST00000541122 KRTAP15-1Q3LI76 137 aa7.19□□□□□ -1.26
SMARCA4-207ENST00000541122 CSMD2Q7Z408 3487 aa7.19□□□□□ -1.26
SMARCA4-207ENST00000541122 TENM1Q9UKZ4 2725 aa7.19□□□□□ -1.26
SMARCA4-207ENST00000541122 SVEP1Q4LDE5 3571 aa7.17□□□□□ -1.26
SMARCA4-207ENST00000541122 TENM2Q9NT68 2774 aa7.08□□□□□ -1.28
SMARCA4-207ENST00000541122 INE1O15225 51 aa7.05□□□□□ -1.28
SMARCA4-207ENST00000541122 VWFP04275 2813 aa7.01□□□□□ -1.29
SMARCA4-207ENST00000541122 FBN3Q75N90 2809 aa6.99□□□□□ -1.29
SMARCA4-207ENST00000541122 KRTAP3-2Q9BYR7 98 aa6.98□□□□□ -1.29
SMARCA4-207ENST00000541122 ZNF469Q96JG9 3925 aaPredicted RBP6.98□□□□□ -1.29
SMARCA4-207ENST00000541122 KRTAP3-3Q9BYR6 98 aa6.9□□□□□ -1.3
SMARCA4-207ENST00000541122 VPS13CQ709C8 3753 aa6.89□□□□□ -1.31
SMARCA4-207ENST00000541122 TRRAPQ9Y4A5 3859 aa6.86□□□□□ -1.31
SMARCA4-207ENST00000541122 PKD1L1Q8TDX9 2849 aa6.83□□□□□ -1.32
SMARCA4-207ENST00000541122 CUBNO60494 3623 aa6.79□□□□□ -1.32
SMARCA4-207ENST00000541122 KRTAP23-1A1A580 65 aa6.79□□□□□ -1.32
SMARCA4-207ENST00000541122 ANK2Q01484 3957 aa6.73□□□□□ -1.33
SMARCA4-207ENST00000541122 MEGF8Q7Z7M0 2845 aa6.7□□□□□ -1.34
SMARCA4-207ENST00000541122 HUWE1Q7Z6Z7 4374 aaKnown RBP6.69□□□□□ -1.34
SMARCA4-207ENST00000541122 DNAH9Q9NYC9 4486 aa6.63□□□□□ -1.35
SMARCA4-207ENST00000541122 ALMS1Q8TCU4 4167 aa6.61□□□□□ -1.35
SMARCA4-207ENST00000541122 MT1HL1P0DM35 61 aa6.59□□□□□ -1.35
SMARCA4-207ENST00000541122 DNHD1Q96M86 4753 aa6.58□□□□□ -1.36
SMARCA4-207ENST00000541122 KRTAP10-12P60413 245 aa6.57□□□□□ -1.36
SMARCA4-207ENST00000541122 SRRM2Q9UQ35 2752 aaKnown RBP6.56□□□□□ -1.36
SMARCA4-207ENST00000541122 KRTAP10-4P60372 401 aaPredicted RBP6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms