RNA–Protein interactions for RNA: ENST00000529526.5

CTNND1-220, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 6,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-220ENST00000529526 NOTCH1P46531 2555 aa4.47□□□□□ -1.69
CTNND1-220ENST00000529526 LRBAP50851 2863 aa4.45□□□□□ -1.7
CTNND1-220ENST00000529526 C10orf95Q9H7T3 257 aa4.44□□□□□ -1.7
CTNND1-220ENST00000529526 ITPR2Q14571 2701 aa4.43□□□□□ -1.7
CTNND1-220ENST00000529526 UBR5O95071 2799 aaPredicted RBP4.42□□□□□ -1.7
CTNND1-220ENST00000529526 ATMQ13315 3056 aa4.42□□□□□ -1.7
CTNND1-220ENST00000529526 BOD1L1Q8NFC6 3051 aa4.41□□□□□ -1.7
CTNND1-220ENST00000529526 DMXL1Q9Y485 3027 aa4.41□□□□□ -1.7
CTNND1-220ENST00000529526 CFAP47Q6ZTR5 3102 aa4.41□□□□□ -1.7
CTNND1-220ENST00000529526 DMXL2Q8TDJ6 3036 aa4.41□□□□□ -1.7
CTNND1-220ENST00000529526 TACC2O95359 2948 aa4.38□□□□□ -1.71
CTNND1-220ENST00000529526 ITPR1Q14643 2758 aa4.37□□□□□ -1.71
CTNND1-220ENST00000529526 ADGRG4Q8IZF6 3080 aa4.37□□□□□ -1.71
CTNND1-220ENST00000529526 COL12A1Q99715 3063 aa4.37□□□□□ -1.71
CTNND1-220ENST00000529526 TNP1P09430 55 aa4.36□□□□□ -1.71
CTNND1-220ENST00000529526 A0A1B0GVY2 172 aa4.36□□□□□ -1.71
CTNND1-220ENST00000529526 FLNCQ14315 2725 aa4.36□□□□□ -1.71
CTNND1-220ENST00000529526 NBEAQ8NFP9 2946 aa4.36□□□□□ -1.71
CTNND1-220ENST00000529526 KRTAP1-4P0C5Y4 121 aa4.35□□□□□ -1.71
CTNND1-220ENST00000529526 LOC400499M0QZD8 3231 aa4.35□□□□□ -1.71
CTNND1-220ENST00000529526 STAB2Q8WWQ8 2551 aa4.35□□□□□ -1.71
CTNND1-220ENST00000529526 NSD1Q96L73 2696 aaPredicted RBP4.35□□□□□ -1.71
CTNND1-220ENST00000529526 UTP20O75691 2785 aaKnown RBP4.34□□□□□ -1.71
CTNND1-220ENST00000529526 XP32Q5T750 250 aa4.34□□□□□ -1.71
CTNND1-220ENST00000529526 APCP25054 2843 aa4.34□□□□□ -1.72
CTNND1-220ENST00000529526 CRYBG3Q68DQ2 2970 aa4.33□□□□□ -1.72
CTNND1-220ENST00000529526 KRTAP21-3Q3LHN1 58 aa4.33□□□□□ -1.72
CTNND1-220ENST00000529526 ASH1LQ9NR48 2969 aaKnown RBP4.32□□□□□ -1.72
CTNND1-220ENST00000529526 DMDP11532 3685 aa4.32□□□□□ -1.72
CTNND1-220ENST00000529526 HIVEP1P15822 2718 aa4.32□□□□□ -1.72
CTNND1-220ENST00000529526 WDFY3Q8IZQ1 3526 aa4.31□□□□□ -1.72
CTNND1-220ENST00000529526 KMT2BQ9UMN6 2715 aaPredicted RBP4.31□□□□□ -1.72
CTNND1-220ENST00000529526 KRTAP10-8P60410 259 aa4.28□□□□□ -1.72
CTNND1-220ENST00000529526 H0YAA0 97 aa4.27□□□□□ -1.73
CTNND1-220ENST00000529526 ZZEF1O43149 2961 aa4.27□□□□□ -1.73
CTNND1-220ENST00000529526 ASPMQ8IZT6 3477 aa4.23□□□□□ -1.73
CTNND1-220ENST00000529526 TPRXLQ17RH7 258 aa4.2□□□□□ -1.74
CTNND1-220ENST00000529526 HRNRQ86YZ3 2850 aaPredicted RBP4.2□□□□□ -1.74
CTNND1-220ENST00000529526 CELSR2Q9HCU4 2923 aa4.19□□□□□ -1.74
CTNND1-220ENST00000529526 DCHS1Q96JQ0 3298 aa4.19□□□□□ -1.74
CTNND1-220ENST00000529526 KRTAP10-10P60014 251 aa4.18□□□□□ -1.74
CTNND1-220ENST00000529526 LAMA5O15230 3695 aa4.18□□□□□ -1.74
CTNND1-220ENST00000529526 PP632Q6XCG6 107 aa4.18□□□□□ -1.74
CTNND1-220ENST00000529526 P0C880 135 aa4.18□□□□□ -1.74
CTNND1-220ENST00000529526 KRTAP13-3Q3SY46 172 aa4.17□□□□□ -1.74
CTNND1-220ENST00000529526 DCHS2Q6V1P9 2916 aa4.15□□□□□ -1.75
CTNND1-220ENST00000529526 TENM4Q6N022 2769 aa4.14□□□□□ -1.75
CTNND1-220ENST00000529526 ZANQ9Y493 2812 aa4.14□□□□□ -1.75
CTNND1-220ENST00000529526 ZFHX4Q86UP3 3567 aa4.12□□□□□ -1.75
CTNND1-220ENST00000529526 RELNP78509 3460 aa4.12□□□□□ -1.75
CTNND1-220ENST00000529526 NIPBLQ6KC79 2804 aaeCLIP4.12□□□□□ -1.751e-6■□□□□ 9
CTNND1-220ENST00000529526 FBN2P35556 2912 aa4.07□□□□□ -1.76
CTNND1-220ENST00000529526 PRO2289Q9P1D8 64 aa4.06□□□□□ -1.76
CTNND1-220ENST00000529526 KRTAP12-2P59991 146 aa4.04□□□□□ -1.76
CTNND1-220ENST00000529526 CELSR1Q9NYQ6 3014 aa4.03□□□□□ -1.76
CTNND1-220ENST00000529526 MXRA5Q9NR99 2828 aa4.03□□□□□ -1.76
CTNND1-220ENST00000529526 NF1P21359 2839 aa4.03□□□□□ -1.76
CTNND1-220ENST00000529526 TENM2Q9NT68 2774 aa4.02□□□□□ -1.77
CTNND1-220ENST00000529526 NBPF19A0A087WUL8 3843 aa4□□□□□ -1.77
CTNND1-220ENST00000529526 CSMD1Q96PZ7 3565 aa4□□□□□ -1.77
CTNND1-220ENST00000529526 SMG1Q96Q15 3661 aaKnown RBP3.99□□□□□ -1.77
CTNND1-220ENST00000529526 BSNQ9UPA5 3926 aa3.99□□□□□ -1.77
CTNND1-220ENST00000529526 TENM1Q9UKZ4 2725 aa3.98□□□□□ -1.77
CTNND1-220ENST00000529526 SPENQ96T58 3664 aaKnown RBP3.97□□□□□ -1.77
CTNND1-220ENST00000529526 TGP01266 2768 aa3.97□□□□□ -1.77
CTNND1-220ENST00000529526 KRTAP12-1P59990 96 aa3.93□□□□□ -1.78
CTNND1-220ENST00000529526 KRTAP3-1Q9BYR8 98 aa3.93□□□□□ -1.78
CTNND1-220ENST00000529526 PDZD2O15018 2839 aa3.92□□□□□ -1.78
CTNND1-220ENST00000529526 KRTAP13-4Q3LI77 160 aa3.91□□□□□ -1.78
CTNND1-220ENST00000529526 TENM3Q9P273 2699 aa3.89□□□□□ -1.79
CTNND1-220ENST00000529526 ANK3Q12955 4377 aaKnown RBP3.87□□□□□ -1.79
CTNND1-220ENST00000529526 SVEP1Q4LDE5 3571 aa3.86□□□□□ -1.79
CTNND1-220ENST00000529526 OTOGQ6ZRI0 2925 aa3.85□□□□□ -1.79
CTNND1-220ENST00000529526 PKD1L1Q8TDX9 2849 aa3.83□□□□□ -1.8
CTNND1-220ENST00000529526 VWFP04275 2813 aa3.81□□□□□ -1.8
CTNND1-220ENST00000529526 KRTAP15-1Q3LI76 137 aa3.8□□□□□ -1.8
CTNND1-220ENST00000529526 KRTAP10-6P60371 365 aaPredicted RBP3.79□□□□□ -1.8
CTNND1-220ENST00000529526 CSMD2Q7Z408 3487 aa3.79□□□□□ -1.8
CTNND1-220ENST00000529526 CUBNO60494 3623 aa3.77□□□□□ -1.81
CTNND1-220ENST00000529526 ZFHX3Q15911 3703 aa3.75□□□□□ -1.81
CTNND1-220ENST00000529526 MT1HL1P0DM35 61 aa3.71□□□□□ -1.82
CTNND1-220ENST00000529526 FBN1P35555 2871 aaKnown RBP3.7□□□□□ -1.82
CTNND1-220ENST00000529526 HUWE1Q7Z6Z7 4374 aaKnown RBP3.7□□□□□ -1.82
CTNND1-220ENST00000529526 VPS13CQ709C8 3753 aa3.69□□□□□ -1.82
CTNND1-220ENST00000529526 TRRAPQ9Y4A5 3859 aa3.68□□□□□ -1.82
CTNND1-220ENST00000529526 INE1O15225 51 aa3.67□□□□□ -1.82
CTNND1-220ENST00000529526 KRTAP3-3Q9BYR6 98 aa3.67□□□□□ -1.82
CTNND1-220ENST00000529526 KRTAP4-5Q9BYR2 181 aa3.66□□□□□ -1.82
CTNND1-220ENST00000529526 KRTAP3-2Q9BYR7 98 aa3.66□□□□□ -1.82
CTNND1-220ENST00000529526 CRCT1Q9UGL9 99 aa3.65□□□□□ -1.82
CTNND1-220ENST00000529526 FBN3Q75N90 2809 aa3.64□□□□□ -1.83
CTNND1-220ENST00000529526 ZNF469Q96JG9 3925 aaPredicted RBP3.64□□□□□ -1.83
CTNND1-220ENST00000529526 KRTAP10-12P60413 245 aa3.62□□□□□ -1.83
CTNND1-220ENST00000529526 MEGF8Q7Z7M0 2845 aa3.61□□□□□ -1.83
CTNND1-220ENST00000529526 KRTAP10-4P60372 401 aaPredicted RBP3.6□□□□□ -1.83
CTNND1-220ENST00000529526 ALMS1Q8TCU4 4167 aa3.59□□□□□ -1.83
CTNND1-220ENST00000529526 AKAP9Q99996 3911 aa3.58□□□□□ -1.84
CTNND1-220ENST00000529526 SRRM2Q9UQ35 2752 aaKnown RBP3.57□□□□□ -1.84
CTNND1-220ENST00000529526 KRTAP23-1A1A580 65 aa3.54□□□□□ -1.84
CTNND1-220ENST00000529526 LORP23490 312 aaPredicted RBP3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms