RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 EDC4Q6P2E9 1401 aaKnown RBP-0.25□□□□□ -2.45
CD44-215ENST00000525241 VPS8Q8N3P4 1428 aa-0.25□□□□□ -2.45
CD44-215ENST00000525241 FYCO1Q9BQS8 1478 aa-0.25□□□□□ -2.45
CD44-215ENST00000525241 MROH2AA6NES4 1674 aa-0.25□□□□□ -2.45
CD44-215ENST00000525241 KIF20BQ96Q89 1820 aa-0.26□□□□□ -2.45
CD44-215ENST00000525241 C4BP0C0L5 1744 aa-0.26□□□□□ -2.45
CD44-215ENST00000525241 FAM208AQ9UK61 1670 aaKnown RBP-0.26□□□□□ -2.45
CD44-215ENST00000525241 A0A1B0GWA3 101 aa-0.26□□□□□ -2.45
CD44-215ENST00000525241 TMEM218A2RU14 115 aa-0.26□□□□□ -2.45
CD44-215ENST00000525241 ATP6V1G2-DDX39BF2Z307 99 aa-0.26□□□□□ -2.45
CD44-215ENST00000525241 KRTDAPP60985 99 aa-0.26□□□□□ -2.45
CD44-215ENST00000525241 UBA52P62987 128 aaKnown RBP-0.26□□□□□ -2.45
CD44-215ENST00000525241 KRTAP6-2Q3LI66 62 aa-0.26□□□□□ -2.45
CD44-215ENST00000525241 RGPD2P0DJD1 1756 aa-0.27□□□□□ -2.45
CD44-215ENST00000525241 PIK3C2BO00750 1634 aa-0.27□□□□□ -2.45
CD44-215ENST00000525241 FANCD2Q9BXW9 1451 aa-0.27□□□□□ -2.45
CD44-215ENST00000525241 TRBV25-1A0A075B6N4 114 aa-0.27□□□□□ -2.45
CD44-215ENST00000525241 MPC2O95563 127 aa-0.27□□□□□ -2.45
CD44-215ENST00000525241 TCEAL7Q9BRU2 100 aa-0.27□□□□□ -2.45
CD44-215ENST00000525241 PRO1933Q9H354 126 aa-0.27□□□□□ -2.45
CD44-215ENST00000525241 CACFD1Q9UGQ2 172 aa-0.27□□□□□ -2.45
CD44-215ENST00000525241 CFAP74Q9C0B2 1584 aa-0.28□□□□□ -2.45
CD44-215ENST00000525241 RBP2P50120 134 aa-0.28□□□□□ -2.45
CD44-215ENST00000525241 ABCA9Q8IUA7 1624 aa-0.28□□□□□ -2.45
CD44-215ENST00000525241 DUOX1Q9NRD9 1551 aa-0.28□□□□□ -2.45
CD44-215ENST00000525241 A0A0G2JND7 137 aa-0.29□□□□□ -2.46
CD44-215ENST00000525241 GNGT2O14610 69 aa-0.29□□□□□ -2.46
CD44-215ENST00000525241 NDUFC1O43677 76 aa-0.29□□□□□ -2.46
CD44-215ENST00000525241 FDCSPQ8NFU4 85 aa-0.29□□□□□ -2.46
CD44-215ENST00000525241 NCOA2Q15596 1464 aa-0.29□□□□□ -2.46
CD44-215ENST00000525241 C7orf77A4D0Y5 90 aa-0.3□□□□□ -2.46
CD44-215ENST00000525241 DEFB121Q5J5C9 76 aa-0.3□□□□□ -2.46
CD44-215ENST00000525241 ACBD7Q8N6N7 88 aa-0.3□□□□□ -2.46
CD44-215ENST00000525241 TRGV9Q99603 122 aa-0.3□□□□□ -2.46
CD44-215ENST00000525241 BCORQ6W2J9 1755 aa-0.3□□□□□ -2.46
CD44-215ENST00000525241 S100A10P60903 97 aa-0.31□□□□□ -2.46
CD44-215ENST00000525241 KRTAP19-8Q3LI54 63 aa-0.31□□□□□ -2.46
CD44-215ENST00000525241 KRTAP19-7Q3SYF9 63 aa-0.31□□□□□ -2.46
CD44-215ENST00000525241 SERP2Q8N6R1 65 aa-0.31□□□□□ -2.46
CD44-215ENST00000525241 PMCHL2Q9BQD1 86 aa-0.31□□□□□ -2.46
CD44-215ENST00000525241 RRBP1Q9P2E9 1410 aaKnown RBP-0.31□□□□□ -2.46
CD44-215ENST00000525241 TRBV7-7A0A0K0K1E9 115 aa-0.32□□□□□ -2.46
CD44-215ENST00000525241 ATOX1O00244 68 aa-0.32□□□□□ -2.46
CD44-215ENST00000525241 NCMAPQ5T1S8 102 aa-0.32□□□□□ -2.46
CD44-215ENST00000525241 C6orf201Q7Z4U5 140 aa-0.32□□□□□ -2.46
CD44-215ENST00000525241 UACAQ9BZF9 1416 aa-0.32□□□□□ -2.46
CD44-215ENST00000525241 A0A1B0GU69 56 aa-0.33□□□□□ -2.46
CD44-215ENST00000525241 H0Y9P7 68 aa-0.33□□□□□ -2.46
CD44-215ENST00000525241 SYS1-DBNDD2H3BUS1 97 aa-0.33□□□□□ -2.46
CD44-215ENST00000525241 KLK9Q2XQG4 91 aa-0.33□□□□□ -2.46
CD44-215ENST00000525241 PSMG4Q5JS54 123 aa-0.33□□□□□ -2.46
CD44-215ENST00000525241 DEFB107AQ8IZN7 70 aa-0.33□□□□□ -2.46
CD44-215ENST00000525241 DEFB105AQ8NG35 78 aa-0.33□□□□□ -2.46
CD44-215ENST00000525241 A0A1B0GUL6 1792 aa-0.34□□□□□ -2.46
CD44-215ENST00000525241 ARMS2P0C7Q2 107 aa-0.34□□□□□ -2.46
CD44-215ENST00000525241 PMCHL1Q16048 86 aa-0.34□□□□□ -2.46
CD44-215ENST00000525241 ABCA10Q8WWZ4 1543 aa-0.34□□□□□ -2.46
CD44-215ENST00000525241 PPLO60437 1756 aa-0.34□□□□□ -2.46
CD44-215ENST00000525241 CDC42BPGQ6DT37 1551 aa-0.35□□□□□ -2.47
CD44-215ENST00000525241 CEP162Q5TB80 1403 aa-0.35□□□□□ -2.47
CD44-215ENST00000525241 H3BQF6 201 aa-0.35□□□□□ -2.47
CD44-215ENST00000525241 UQCRHP07919 91 aa-0.35□□□□□ -2.47
CD44-215ENST00000525241 USMG5Q96IX5 58 aa-0.35□□□□□ -2.47
CD44-215ENST00000525241 SNHG12Q9BXW3 62 aa-0.35□□□□□ -2.47
CD44-215ENST00000525241 DPY30Q9C005 99 aa-0.35□□□□□ -2.47
CD44-215ENST00000525241 CRIPTQ9P021 101 aa-0.35□□□□□ -2.47
CD44-215ENST00000525241 SYCP2Q9BX26 1530 aa-0.35□□□□□ -2.47
CD44-215ENST00000525241 CCDC141Q6ZP82 1450 aa-0.35□□□□□ -2.47
CD44-215ENST00000525241 MT1MQ8N339 61 aa-0.36□□□□□ -2.47
CD44-215ENST00000525241 LINC00032P0C843 101 aa-0.37□□□□□ -2.47
CD44-215ENST00000525241 COX8AP10176 69 aa-0.37□□□□□ -2.47
CD44-215ENST00000525241 PSENENQ9NZ42 101 aa-0.37□□□□□ -2.47
CD44-215ENST00000525241 M0R143 59 aa-0.38□□□□□ -2.47
CD44-215ENST00000525241 SPINK4O60575 86 aa-0.38□□□□□ -2.47
CD44-215ENST00000525241 H1FX-AS1Q4G0G2 97 aa-0.38□□□□□ -2.47
CD44-215ENST00000525241 VAMP8Q9BV40 100 aa-0.38□□□□□ -2.47
CD44-215ENST00000525241 HIGD1BQ9P298 99 aa-0.38□□□□□ -2.47
CD44-215ENST00000525241 TOP2AP11388 1531 aaKnown RBP-0.38□□□□□ -2.47
CD44-215ENST00000525241 IQGAP2Q13576 1575 aa-0.39□□□□□ -2.47
CD44-215ENST00000525241 CCNB3Q8WWL7 1395 aa-0.39□□□□□ -2.47
CD44-215ENST00000525241 CPSF4LA6NMK7 179 aaKnown RBP-0.39□□□□□ -2.47
CD44-215ENST00000525241 F8WEM9 126 aa-0.39□□□□□ -2.47
CD44-215ENST00000525241 AP4S1Q9Y587 144 aa-0.39□□□□□ -2.47
CD44-215ENST00000525241 MT1GP13640 62 aa-0.4□□□□□ -2.47
CD44-215ENST00000525241 HMGN3Q15651 99 aa-0.4□□□□□ -2.47
CD44-215ENST00000525241 APLNQ9ULZ1 77 aa-0.4□□□□□ -2.47
CD44-215ENST00000525241 UBE2D4Q9Y2X8 147 aa-0.4□□□□□ -2.47
CD44-215ENST00000525241 ANKRD36CQ5JPF3 1778 aa-0.41□□□□□ -2.47
CD44-215ENST00000525241 S100A8P05109 93 aa-0.41□□□□□ -2.48
CD44-215ENST00000525241 ETDBQ3ZM63 59 aa-0.41□□□□□ -2.48
CD44-215ENST00000525241 MRPL34Q9BQ48 92 aaKnown RBP-0.41□□□□□ -2.48
CD44-215ENST00000525241 C20orf78Q9BR46 151 aa-0.41□□□□□ -2.48
CD44-215ENST00000525241 FXYD6Q9H0Q3 95 aa-0.41□□□□□ -2.48
CD44-215ENST00000525241 MT1EP04732 61 aa-0.42□□□□□ -2.48
CD44-215ENST00000525241 IGLC2P0DOY2 106 aa-0.42□□□□□ -2.48
CD44-215ENST00000525241 IGLC3P0DOY3 106 aa-0.42□□□□□ -2.48
CD44-215ENST00000525241 GNGT1P63211 74 aa-0.42□□□□□ -2.48
CD44-215ENST00000525241 UQCRHLA0A096LP55 91 aa-0.43□□□□□ -2.48
CD44-215ENST00000525241 FAUP35544 74 aaKnown RBP-0.43□□□□□ -2.48
CD44-215ENST00000525241 PKIAP61925 76 aa-0.43□□□□□ -2.48
Retrieved 100 of 20,778 RNA–protein pairs in 135.9 ms