RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 J3QL48 77 aa7.63□□□□□ -1.19
USP53-209ENST00000514665 Q75L30 129 aa7.62□□□□□ -1.19
USP53-209ENST00000514665 Q5VV11 94 aa7.61□□□□□ -1.19
USP53-209ENST00000514665 LINC01558Q9Y6Z2 57 aa7.61□□□□□ -1.19
USP53-209ENST00000514665 Q5W150 140 aa7.6□□□□□ -1.19
USP53-209ENST00000514665 LINC01554Q52M75 96 aa7.6□□□□□ -1.19
USP53-209ENST00000514665 ZNF469Q96JG9 3925 aaPredicted RBP7.59□□□□□ -1.19
USP53-209ENST00000514665 COX6B2Q6YFQ2 88 aa7.59□□□□□ -1.19
USP53-209ENST00000514665 CRIPTQ9P021 101 aa7.58□□□□□ -1.2
USP53-209ENST00000514665 SPINK7P58062 85 aa7.57□□□□□ -1.2
USP53-209ENST00000514665 KRTAP10-2P60368 255 aa7.56□□□□□ -1.2
USP53-209ENST00000514665 KRTAP11-1Q8IUC1 163 aa7.56□□□□□ -1.2
USP53-209ENST00000514665 KRTAP29-1A8MX34 341 aaPredicted RBP7.55□□□□□ -1.2
USP53-209ENST00000514665 ZCCHC13Q8WW36 166 aaKnown RBP7.54□□□□□ -1.2
USP53-209ENST00000514665 A0A1B0GU33 70 aa7.54□□□□□ -1.2
USP53-209ENST00000514665 KRTAP7-1Q8IUC3 87 aa7.54□□□□□ -1.2
USP53-209ENST00000514665 KRTAP10-1P60331 282 aa7.53□□□□□ -1.2
USP53-209ENST00000514665 PRAC1Q96KF2 57 aa7.52□□□□□ -1.21
USP53-209ENST00000514665 TENM1Q9UKZ4 2725 aa7.52□□□□□ -1.21
USP53-209ENST00000514665 RBM12B-AS1Q9P1G2 102 aa7.51□□□□□ -1.21
USP53-209ENST00000514665 PKD1L1Q8TDX9 2849 aa7.5□□□□□ -1.21
USP53-209ENST00000514665 A0A087X002 238 aa7.5□□□□□ -1.21
USP53-209ENST00000514665 NOTCH2NLQ7Z3S9 236 aa7.5□□□□□ -1.21
USP53-209ENST00000514665 LINC00483Q53H64 154 aa7.47□□□□□ -1.21
USP53-209ENST00000514665 PDZD2O15018 2839 aa7.44□□□□□ -1.22
USP53-209ENST00000514665 Q6ZSA8 131 aa7.44□□□□□ -1.22
USP53-209ENST00000514665 Q6ZR54 194 aa7.44□□□□□ -1.22
USP53-209ENST00000514665 FBN1P35555 2871 aaKnown RBP7.41□□□□□ -1.22
USP53-209ENST00000514665 DMAC1Q96GE9 116 aa7.4□□□□□ -1.22
USP53-209ENST00000514665 Q6ZRN7 208 aaPredicted RBP7.39□□□□□ -1.23
USP53-209ENST00000514665 AKAP9Q99996 3911 aa7.36□□□□□ -1.23
USP53-209ENST00000514665 VWFP04275 2813 aa7.36□□□□□ -1.23
USP53-209ENST00000514665 CSAG1Q6PB30 78 aa7.35□□□□□ -1.23
USP53-209ENST00000514665 LCE6AA0A183 80 aa7.32□□□□□ -1.24
USP53-209ENST00000514665 TGP01266 2768 aa7.31□□□□□ -1.24
USP53-209ENST00000514665 KRTAP13-1Q8IUC0 172 aa7.29□□□□□ -1.24
USP53-209ENST00000514665 S4R3F8 94 aa7.28□□□□□ -1.24
USP53-209ENST00000514665 Q5VSD8 79 aa7.27□□□□□ -1.25
USP53-209ENST00000514665 CAMK2N1Q7Z7J9 78 aa7.27□□□□□ -1.25
USP53-209ENST00000514665 A8MU10 97 aa7.27□□□□□ -1.25
USP53-209ENST00000514665 TENM2Q9NT68 2774 aa7.25□□□□□ -1.25
USP53-209ENST00000514665 KRTAP13-2Q52LG2 175 aa7.24□□□□□ -1.25
USP53-209ENST00000514665 SRRM2Q9UQ35 2752 aaKnown RBP7.23□□□□□ -1.25
USP53-209ENST00000514665 SPATA8Q6RVD6 105 aa7.22□□□□□ -1.25
USP53-209ENST00000514665 OTOGQ6ZRI0 2925 aa7.21□□□□□ -1.26
USP53-209ENST00000514665 RPL37P61927 97 aaKnown RBP7.19□□□□□ -1.26
USP53-209ENST00000514665 ASB16-AS1Q495Z4 193 aa7.19□□□□□ -1.26
USP53-209ENST00000514665 H1FX-AS1Q4G0G2 97 aa7.19□□□□□ -1.26
USP53-209ENST00000514665 R4GN34 69 aa7.19□□□□□ -1.26
USP53-209ENST00000514665 H3BS24 57 aa7.17□□□□□ -1.26
USP53-209ENST00000514665 M0R2T5 61 aa7.13□□□□□ -1.27
USP53-209ENST00000514665 LUZP6Q538Z0 58 aa7.13□□□□□ -1.27
USP53-209ENST00000514665 ANK3Q12955 4377 aaKnown RBP7.1□□□□□ -1.27
USP53-209ENST00000514665 A6NN06 94 aa7.1□□□□□ -1.27
USP53-209ENST00000514665 ROMO1P60602 79 aa7.09□□□□□ -1.27
USP53-209ENST00000514665 ADM2Q7Z4H4 148 aa7.09□□□□□ -1.27
USP53-209ENST00000514665 SEC61BP60468 96 aaKnown RBP7.08□□□□□ -1.28
USP53-209ENST00000514665 M0QZ58 72 aa7.08□□□□□ -1.28
USP53-209ENST00000514665 RPS29P62273 56 aaKnown RBP7.01□□□□□ -1.29
USP53-209ENST00000514665 TRRAPQ9Y4A5 3859 aa6.97□□□□□ -1.29
USP53-209ENST00000514665 FBN3Q75N90 2809 aa6.95□□□□□ -1.3
USP53-209ENST00000514665 KRTAP1-4P0C5Y4 121 aa6.93□□□□□ -1.3
USP53-209ENST00000514665 A8MUU9 505 aa6.89□□□□□ -1.31
USP53-209ENST00000514665 KRTAP25-1Q3LHN0 102 aa6.89□□□□□ -1.31
USP53-209ENST00000514665 C20orf166-AS1Q96NR2 134 aa6.86□□□□□ -1.31
USP53-209ENST00000514665 CSMD3Q7Z407 3707 aa6.84□□□□□ -1.32
USP53-209ENST00000514665 COL7A1Q02388 2944 aa6.83□□□□□ -1.32
USP53-209ENST00000514665 ANK2Q01484 3957 aa6.83□□□□□ -1.32
USP53-209ENST00000514665 KRTAP16-1A8MUX0 517 aa6.77□□□□□ -1.33
USP53-209ENST00000514665 MEGF8Q7Z7M0 2845 aa6.76□□□□□ -1.33
USP53-209ENST00000514665 CMYA5Q8N3K9 4069 aa6.74□□□□□ -1.33
USP53-209ENST00000514665 A0A0A0MQY5 61 aa6.73□□□□□ -1.33
USP53-209ENST00000514665 H0YAA0 97 aa6.7□□□□□ -1.34
USP53-209ENST00000514665 XP32Q5T750 250 aa6.7□□□□□ -1.34
USP53-209ENST00000514665 PLAC4Q8WY50 150 aa6.7□□□□□ -1.34
USP53-209ENST00000514665 KRTAP21-3Q3LHN1 58 aa6.67□□□□□ -1.34
USP53-209ENST00000514665 NDUFAF8A1L188 74 aa6.67□□□□□ -1.34
USP53-209ENST00000514665 C10orf95Q9H7T3 257 aa6.65□□□□□ -1.34
USP53-209ENST00000514665 KRTAP13-3Q3SY46 172 aa6.64□□□□□ -1.35
USP53-209ENST00000514665 DNHD1Q96M86 4753 aa6.62□□□□□ -1.35
USP53-209ENST00000514665 P0C880 135 aa6.56□□□□□ -1.36
USP53-209ENST00000514665 LYSTQ99698 3801 aa6.51□□□□□ -1.37
USP53-209ENST00000514665 DNAH3Q8TD57 4116 aa6.5□□□□□ -1.37
USP53-209ENST00000514665 TNP1P09430 55 aa6.49□□□□□ -1.37
USP53-209ENST00000514665 A0A1B0GVY2 172 aa6.48□□□□□ -1.37
USP53-209ENST00000514665 TPRXLQ17RH7 258 aa6.45□□□□□ -1.38
USP53-209ENST00000514665 KRTAP10-8P60410 259 aa6.43□□□□□ -1.38
USP53-209ENST00000514665 PRKDCP78527 4128 aaKnown RBP6.4□□□□□ -1.38
USP53-209ENST00000514665 DNAH7Q8WXX0 4024 aa6.36□□□□□ -1.39
USP53-209ENST00000514665 KRTAP3-1Q9BYR8 98 aa6.35□□□□□ -1.39
USP53-209ENST00000514665 HUWE1Q7Z6Z7 4374 aaKnown RBP6.33□□□□□ -1.4
USP53-209ENST00000514665 PP632Q6XCG6 107 aa6.3□□□□□ -1.4
USP53-209ENST00000514665 DNAH9Q9NYC9 4486 aa6.29□□□□□ -1.4
USP53-209ENST00000514665 KRTAP12-2P59991 146 aa6.27□□□□□ -1.41
USP53-209ENST00000514665 KRTAP10-10P60014 251 aa6.23□□□□□ -1.41
USP53-209ENST00000514665 DNAH10Q8IVF4 4471 aa6.2□□□□□ -1.42
USP53-209ENST00000514665 STARD9Q9P2P6 4700 aa6.2□□□□□ -1.42
USP53-209ENST00000514665 DNAH1Q9P2D7 4330 aa6.19□□□□□ -1.42
USP53-209ENST00000514665 PLECQ15149 4684 aaKnown RBP6.18□□□□□ -1.42
USP53-209ENST00000514665 KRTAP12-1P59990 96 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 598.9 ms