RNA–Protein interactions for RNA: ENST00000488683.1

CLIC4-202, Transcript of chloride intracellular channel 4, humanhuman

TSL 2

Gene CLIC4, Length 2,723 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIC4-202ENST00000488683 ZNF706Q9Y5V0 76 aaPredicted RBP7.52□□□□□ -1.21
CLIC4-202ENST00000488683 PKD1P98161 4303 aa7.52□□□□□ -1.21
CLIC4-202ENST00000488683 ASB16-AS1Q495Z4 193 aa7.51□□□□□ -1.21
CLIC4-202ENST00000488683 C8orf17Q9NRJ1 99 aa7.51□□□□□ -1.21
CLIC4-202ENST00000488683 C1orf134Q5TEV5 83 aa7.5□□□□□ -1.21
CLIC4-202ENST00000488683 VPS13BQ7Z7G8 4022 aa7.49□□□□□ -1.21
CLIC4-202ENST00000488683 A8MUN3 132 aa7.49□□□□□ -1.21
CLIC4-202ENST00000488683 H3BPC8 53 aa7.49□□□□□ -1.21
CLIC4-202ENST00000488683 RETNLBQ9BQ08 111 aa7.49□□□□□ -1.21
CLIC4-202ENST00000488683 A0A1B0GVX0 72 aa7.48□□□□□ -1.21
CLIC4-202ENST00000488683 CD164Q04900 197 aa7.48□□□□□ -1.21
CLIC4-202ENST00000488683 PKHD1P08F94 4074 aa7.47□□□□□ -1.21
CLIC4-202ENST00000488683 IGLV7-43P04211 117 aa7.46□□□□□ -1.21
CLIC4-202ENST00000488683 Q1T7F1 81 aa7.46□□□□□ -1.21
CLIC4-202ENST00000488683 SPANXA2-OT1Q8N9U9 137 aa7.46□□□□□ -1.22
CLIC4-202ENST00000488683 CDK2AP2O75956 126 aa7.44□□□□□ -1.22
CLIC4-202ENST00000488683 C1orf195Q5TG92 126 aa7.44□□□□□ -1.22
CLIC4-202ENST00000488683 Q5W150 140 aa7.43□□□□□ -1.22
CLIC4-202ENST00000488683 MRPL34Q9BQ48 92 aaKnown RBP7.41□□□□□ -1.22
CLIC4-202ENST00000488683 TP53AIP1Q9HCN2 124 aa7.41□□□□□ -1.22
CLIC4-202ENST00000488683 COA5Q86WW8 74 aa7.4□□□□□ -1.22
CLIC4-202ENST00000488683 IGLV7-46A0A075B6I9 117 aa7.39□□□□□ -1.23
CLIC4-202ENST00000488683 KRTAP10-1P60331 282 aa7.39□□□□□ -1.23
CLIC4-202ENST00000488683 Q8N9P0 234 aaPredicted RBP7.37□□□□□ -1.23
CLIC4-202ENST00000488683 PRR15LQ9BU68 103 aa7.37□□□□□ -1.23
CLIC4-202ENST00000488683 KRTAP13-2Q52LG2 175 aa7.36□□□□□ -1.23
CLIC4-202ENST00000488683 Q5VV11 94 aa7.36□□□□□ -1.23
CLIC4-202ENST00000488683 SPAG11AQ6PDA7 123 aa7.36□□□□□ -1.23
CLIC4-202ENST00000488683 CHKB-CPT1BH3BT56 60 aa7.33□□□□□ -1.24
CLIC4-202ENST00000488683 HRES1P13985 223 aa7.31□□□□□ -1.24
CLIC4-202ENST00000488683 KRTAP13-3Q3SY46 172 aa7.31□□□□□ -1.24
CLIC4-202ENST00000488683 SSBP3-AS1Q7Z2R9 100 aa7.31□□□□□ -1.24
CLIC4-202ENST00000488683 V9GYY9 64 aa7.31□□□□□ -1.24
CLIC4-202ENST00000488683 Q6ZSA8 131 aa7.3□□□□□ -1.24
CLIC4-202ENST00000488683 PRR26Q8N8Z3 221 aa7.29□□□□□ -1.24
CLIC4-202ENST00000488683 FAT1Q14517 4588 aa7.28□□□□□ -1.24
CLIC4-202ENST00000488683 SACSQ9NZJ4 4579 aa7.27□□□□□ -1.25
CLIC4-202ENST00000488683 PMAIP1Q13794 54 aa7.25□□□□□ -1.25
CLIC4-202ENST00000488683 KRTAP1-4P0C5Y4 121 aa7.25□□□□□ -1.25
CLIC4-202ENST00000488683 SPTSSBQ8NFR3 76 aa7.25□□□□□ -1.25
CLIC4-202ENST00000488683 LIMD2Q9BT23 127 aa7.25□□□□□ -1.25
CLIC4-202ENST00000488683 LOC101927531A0A1B0GV80 90 aa7.24□□□□□ -1.25
CLIC4-202ENST00000488683 LINC00313P59037 77 aa7.24□□□□□ -1.25
CLIC4-202ENST00000488683 SMR3BP02814 79 aaPredicted RBP7.23□□□□□ -1.25
CLIC4-202ENST00000488683 C8orf87E5RJ46 101 aa7.22□□□□□ -1.25
CLIC4-202ENST00000488683 A6NED7 52 aa7.22□□□□□ -1.25
CLIC4-202ENST00000488683 LCA10Q71F78 164 aa7.22□□□□□ -1.25
CLIC4-202ENST00000488683 DYNC1H1Q14204 4646 aaKnown RBP7.22□□□□□ -1.25
CLIC4-202ENST00000488683 PLA2G1BP04054 148 aaKnown RBP7.2□□□□□ -1.26
CLIC4-202ENST00000488683 SPINK7P58062 85 aa7.19□□□□□ -1.26
CLIC4-202ENST00000488683 SEC61GP60059 68 aa7.19□□□□□ -1.26
CLIC4-202ENST00000488683 IGKV2D-30A0A075B6S6 120 aa7.18□□□□□ -1.26
CLIC4-202ENST00000488683 IGKV2-30P06310 120 aa7.18□□□□□ -1.26
CLIC4-202ENST00000488683 KRTAP16-1A8MUX0 517 aa7.18□□□□□ -1.26
CLIC4-202ENST00000488683 Q75L30 129 aa7.17□□□□□ -1.26
CLIC4-202ENST00000488683 LINC01558Q9Y6Z2 57 aa7.15□□□□□ -1.26
CLIC4-202ENST00000488683 KMT2CQ8NEZ4 4911 aaKnown RBP7.14□□□□□ -1.27
CLIC4-202ENST00000488683 FAM229AH3BQW9 127 aa7.14□□□□□ -1.27
CLIC4-202ENST00000488683 TYMSOSQ8TAI1 123 aa7.14□□□□□ -1.27
CLIC4-202ENST00000488683 DMAC1Q96GE9 116 aa7.1□□□□□ -1.27
CLIC4-202ENST00000488683 C4orf48Q5BLP8 95 aa7.09□□□□□ -1.27
CLIC4-202ENST00000488683 APOBP04114 4563 aaKnown RBP7.09□□□□□ -1.27
CLIC4-202ENST00000488683 C9orf92A6NGG3 77 aa7.08□□□□□ -1.28
CLIC4-202ENST00000488683 ACYP2P14621 99 aa7.08□□□□□ -1.28
CLIC4-202ENST00000488683 ATP11AUNQ6ZP68 121 aa7.07□□□□□ -1.28
CLIC4-202ENST00000488683 Q8N1X5 172 aa7.06□□□□□ -1.28
CLIC4-202ENST00000488683 SPINK1P00995 79 aa7.06□□□□□ -1.28
CLIC4-202ENST00000488683 CDC42SE1Q9NRR8 79 aa7.06□□□□□ -1.28
CLIC4-202ENST00000488683 LRP1Q07954 4544 aaKnown RBP7.05□□□□□ -1.28
CLIC4-202ENST00000488683 RYR2Q92736 4967 aa7.03□□□□□ -1.28
CLIC4-202ENST00000488683 A6NN06 94 aa7.02□□□□□ -1.29
CLIC4-202ENST00000488683 C7orf65Q6ZTY9 151 aa7.02□□□□□ -1.29
CLIC4-202ENST00000488683 KTN1-AS1Q86SY8 53 aa7.02□□□□□ -1.29
CLIC4-202ENST00000488683 PKHD1L1Q86WI1 4243 aa7.01□□□□□ -1.29
CLIC4-202ENST00000488683 LINC00304Q8N9R0 145 aa7□□□□□ -1.29
CLIC4-202ENST00000488683 MYCBP2O75592 4640 aa6.96□□□□□ -1.3
CLIC4-202ENST00000488683 A0A1B0GU69 56 aa6.96□□□□□ -1.3
CLIC4-202ENST00000488683 RBM12B-AS1Q9P1G2 102 aa6.96□□□□□ -1.3
CLIC4-202ENST00000488683 KRTAP10-4P60372 401 aaPredicted RBP6.94□□□□□ -1.3
CLIC4-202ENST00000488683 A0A1B0GVY2 172 aa6.93□□□□□ -1.3
CLIC4-202ENST00000488683 KRTAP21-3Q3LHN1 58 aa6.92□□□□□ -1.3
CLIC4-202ENST00000488683 RPS29P62273 56 aaKnown RBP6.92□□□□□ -1.3
CLIC4-202ENST00000488683 RYR3Q15413 4870 aa6.9□□□□□ -1.3
CLIC4-202ENST00000488683 FLG2Q5D862 2391 aaPredicted RBP6.9□□□□□ -1.3
CLIC4-202ENST00000488683 HSPG2P98160 4391 aa6.9□□□□□ -1.31
CLIC4-202ENST00000488683 ADM2Q7Z4H4 148 aa6.88□□□□□ -1.31
CLIC4-202ENST00000488683 PRAC1Q96KF2 57 aa6.87□□□□□ -1.31
CLIC4-202ENST00000488683 DMBT1Q9UGM3 2413 aaPredicted RBP6.86□□□□□ -1.31
CLIC4-202ENST00000488683 FAT3Q8TDW7 4589 aa6.84□□□□□ -1.31
CLIC4-202ENST00000488683 TNXBP22105 4242 aa6.83□□□□□ -1.32
CLIC4-202ENST00000488683 A8MUU9 505 aa6.83□□□□□ -1.32
CLIC4-202ENST00000488683 C20orf166-AS1Q96NR2 134 aa6.83□□□□□ -1.32
CLIC4-202ENST00000488683 KRTAP3-1Q9BYR8 98 aa6.82□□□□□ -1.32
CLIC4-202ENST00000488683 MIR22HGQ0VDD5 57 aa6.8□□□□□ -1.32
CLIC4-202ENST00000488683 SPATA8Q6RVD6 105 aa6.79□□□□□ -1.32
CLIC4-202ENST00000488683 KIAA1109Q2LD37 5005 aa6.78□□□□□ -1.32
CLIC4-202ENST00000488683 LPAP08519 4548 aa6.78□□□□□ -1.32
CLIC4-202ENST00000488683 KRTAP17-1Q9BYP8 105 aa6.77□□□□□ -1.33
CLIC4-202ENST00000488683 UQCR11O14957 56 aa6.76□□□□□ -1.33
CLIC4-202ENST00000488683 RYR1P21817 5038 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 120.3 ms