RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 LY6G6CO95867 125 aa10.61□□□□□ -0.71
VIM-206ENST00000487938 CIRBP-AS1Q8TBR5 109 aa10.61□□□□□ -0.71
VIM-206ENST00000487938 MRPL34Q9BQ48 92 aaKnown RBP10.61□□□□□ -0.71
VIM-206ENST00000487938 DNAH6Q9C0G6 4158 aa10.61□□□□□ -0.71
VIM-206ENST00000487938 IGLV7-46A0A075B6I9 117 aa10.6□□□□□ -0.71
VIM-206ENST00000487938 CD164Q04900 197 aa10.6□□□□□ -0.71
VIM-206ENST00000487938 A8MUN3 132 aa10.6□□□□□ -0.71
VIM-206ENST00000487938 ALMS1Q8TCU4 4167 aa10.6□□□□□ -0.71
VIM-206ENST00000487938 DNAH11Q96DT5 4516 aa10.56□□□□□ -0.72
VIM-206ENST00000487938 COA5Q86WW8 74 aa10.56□□□□□ -0.72
VIM-206ENST00000487938 Q8N9P0 234 aaPredicted RBP10.55□□□□□ -0.72
VIM-206ENST00000487938 V9GYY9 64 aa10.55□□□□□ -0.72
VIM-206ENST00000487938 KRTAP10-2P60368 255 aa10.54□□□□□ -0.72
VIM-206ENST00000487938 DNAH5Q8TE73 4624 aa10.53□□□□□ -0.72
VIM-206ENST00000487938 Q5VV11 94 aa10.5□□□□□ -0.73
VIM-206ENST00000487938 Q5W150 140 aa10.48□□□□□ -0.73
VIM-206ENST00000487938 PRR15LQ9BU68 103 aa10.47□□□□□ -0.73
VIM-206ENST00000487938 LIMD2Q9BT23 127 aa10.46□□□□□ -0.73
VIM-206ENST00000487938 SSBP3-AS1Q7Z2R9 100 aa10.46□□□□□ -0.74
VIM-206ENST00000487938 C1orf195Q5TG92 126 aa10.44□□□□□ -0.74
VIM-206ENST00000487938 A8MU10 97 aa10.43□□□□□ -0.74
VIM-206ENST00000487938 CHKB-CPT1BH3BT56 60 aa10.42□□□□□ -0.74
VIM-206ENST00000487938 HRES1P13985 223 aa10.41□□□□□ -0.74
VIM-206ENST00000487938 LRP1BQ9NZR2 4599 aa10.4□□□□□ -0.74
VIM-206ENST00000487938 KRTAP10-1P60331 282 aa10.39□□□□□ -0.75
VIM-206ENST00000487938 KRTAP13-3Q3SY46 172 aa10.39□□□□□ -0.75
VIM-206ENST00000487938 KRTAP13-2Q52LG2 175 aa10.39□□□□□ -0.75
VIM-206ENST00000487938 SPAG11AQ6PDA7 123 aa10.39□□□□□ -0.75
VIM-206ENST00000487938 LOC101927531A0A1B0GV80 90 aa10.38□□□□□ -0.75
VIM-206ENST00000487938 PKD1P98161 4303 aa10.38□□□□□ -0.75
VIM-206ENST00000487938 KRTAP21-3Q3LHN1 58 aa10.37□□□□□ -0.75
VIM-206ENST00000487938 RETNLBQ9BQ08 111 aa10.36□□□□□ -0.75
VIM-206ENST00000487938 C8orf87E5RJ46 101 aa10.35□□□□□ -0.75
VIM-206ENST00000487938 LINC00313P59037 77 aa10.35□□□□□ -0.75
VIM-206ENST00000487938 HYDINQ4G0P3 5121 aa10.35□□□□□ -0.75
VIM-206ENST00000487938 FAT2Q9NYQ8 4349 aa10.32□□□□□ -0.76
VIM-206ENST00000487938 Q6ZSA8 131 aa10.32□□□□□ -0.76
VIM-206ENST00000487938 Q75L30 129 aa10.31□□□□□ -0.76
VIM-206ENST00000487938 LINC01558Q9Y6Z2 57 aa10.29□□□□□ -0.76
VIM-206ENST00000487938 A6NED7 52 aa10.28□□□□□ -0.76
VIM-206ENST00000487938 VPS13BQ7Z7G8 4022 aa10.28□□□□□ -0.76
VIM-206ENST00000487938 PRR26Q8N8Z3 221 aa10.27□□□□□ -0.76
VIM-206ENST00000487938 KRTAP1-4P0C5Y4 121 aa10.26□□□□□ -0.77
VIM-206ENST00000487938 LCA10Q71F78 164 aa10.26□□□□□ -0.77
VIM-206ENST00000487938 FAM229AH3BQW9 127 aa10.23□□□□□ -0.77
VIM-206ENST00000487938 ACYP2P14621 99 aa10.21□□□□□ -0.77
VIM-206ENST00000487938 SPTSSBQ8NFR3 76 aa10.2□□□□□ -0.78
VIM-206ENST00000487938 KRTAP16-1A8MUX0 517 aa10.19□□□□□ -0.78
VIM-206ENST00000487938 PMAIP1Q13794 54 aa10.19□□□□□ -0.78
VIM-206ENST00000487938 PLA2G1BP04054 148 aaKnown RBP10.19□□□□□ -0.78
VIM-206ENST00000487938 IGKV2-30P06310 120 aa10.17□□□□□ -0.78
VIM-206ENST00000487938 SPINK7P58062 85 aa10.16□□□□□ -0.78
VIM-206ENST00000487938 C4orf48Q5BLP8 95 aa10.15□□□□□ -0.78
VIM-206ENST00000487938 DMAC1Q96GE9 116 aa10.15□□□□□ -0.78
VIM-206ENST00000487938 TYMSOSQ8TAI1 123 aa10.14□□□□□ -0.79
VIM-206ENST00000487938 CDC42SE1Q9NRR8 79 aa10.12□□□□□ -0.79
VIM-206ENST00000487938 IGKV2D-30A0A075B6S6 120 aa10.1□□□□□ -0.79
VIM-206ENST00000487938 ATP11AUNQ6ZP68 121 aa10.1□□□□□ -0.79
VIM-206ENST00000487938 PKHD1P08F94 4074 aa10.08□□□□□ -0.8
VIM-206ENST00000487938 SPINK1P00995 79 aa10.06□□□□□ -0.8
VIM-206ENST00000487938 SMR3BP02814 79 aaPredicted RBP10□□□□□ -0.81
VIM-206ENST00000487938 SACSQ9NZJ4 4579 aa10□□□□□ -0.81
VIM-206ENST00000487938 LINC00304Q8N9R0 145 aa9.98□□□□□ -0.81
VIM-206ENST00000487938 C7orf65Q6ZTY9 151 aa9.97□□□□□ -0.81
VIM-206ENST00000487938 A6NN06 94 aa9.96□□□□□ -0.81
VIM-206ENST00000487938 A0A1B0GU69 56 aa9.95□□□□□ -0.82
VIM-206ENST00000487938 DYNC1H1Q14204 4646 aaKnown RBP9.91□□□□□ -0.82
VIM-206ENST00000487938 KTN1-AS1Q86SY8 53 aa9.91□□□□□ -0.82
VIM-206ENST00000487938 SEC61GP60059 68 aa9.88□□□□□ -0.83
VIM-206ENST00000487938 Q8N1X5 172 aa9.88□□□□□ -0.83
VIM-206ENST00000487938 A0A1B0GVY2 172 aa9.87□□□□□ -0.83
VIM-206ENST00000487938 FAT1Q14517 4588 aa9.87□□□□□ -0.83
VIM-206ENST00000487938 C9orf92A6NGG3 77 aa9.86□□□□□ -0.83
VIM-206ENST00000487938 RPS29P62273 56 aaKnown RBP9.85□□□□□ -0.83
VIM-206ENST00000487938 APOBP04114 4563 aaKnown RBP9.79□□□□□ -0.84
VIM-206ENST00000487938 PKHD1L1Q86WI1 4243 aa9.78□□□□□ -0.84
VIM-206ENST00000487938 SPATA8Q6RVD6 105 aa9.77□□□□□ -0.85
VIM-206ENST00000487938 KRTAP10-4P60372 401 aaPredicted RBP9.76□□□□□ -0.85
VIM-206ENST00000487938 UQCR11O14957 56 aa9.75□□□□□ -0.85
VIM-206ENST00000487938 MIR22HGQ0VDD5 57 aa9.75□□□□□ -0.85
VIM-206ENST00000487938 A8MUU9 505 aa9.72□□□□□ -0.85
VIM-206ENST00000487938 C20orf166-AS1Q96NR2 134 aa9.72□□□□□ -0.85
VIM-206ENST00000487938 RYR2Q92736 4967 aa9.71□□□□□ -0.86
VIM-206ENST00000487938 RBM12B-AS1Q9P1G2 102 aa9.7□□□□□ -0.86
VIM-206ENST00000487938 KRTAP3-1Q9BYR8 98 aa9.65□□□□□ -0.87
VIM-206ENST00000487938 KMT2CQ8NEZ4 4911 aaKnown RBP9.61□□□□□ -0.87
VIM-206ENST00000487938 ADM2Q7Z4H4 148 aa9.59□□□□□ -0.87
VIM-206ENST00000487938 PRAC1Q96KF2 57 aa9.58□□□□□ -0.88
VIM-206ENST00000487938 FLG2Q5D862 2391 aaPredicted RBP9.53□□□□□ -0.88
VIM-206ENST00000487938 LRP1Q07954 4544 aaKnown RBP9.51□□□□□ -0.89
VIM-206ENST00000487938 FAT3Q8TDW7 4589 aa9.49□□□□□ -0.89
VIM-206ENST00000487938 TNXBP22105 4242 aa9.47□□□□□ -0.89
VIM-206ENST00000487938 H0YAA0 97 aa9.45□□□□□ -0.9
VIM-206ENST00000487938 COX6B2Q6YFQ2 88 aa9.44□□□□□ -0.9
VIM-206ENST00000487938 Q5VSD8 79 aa9.42□□□□□ -0.9
VIM-206ENST00000487938 A0A1B0GU33 70 aa9.42□□□□□ -0.9
VIM-206ENST00000487938 KRTAP10-8P60410 259 aa9.4□□□□□ -0.9
VIM-206ENST00000487938 HSPG2P98160 4391 aa9.39□□□□□ -0.91
VIM-206ENST00000487938 H1FX-AS1Q4G0G2 97 aa9.37□□□□□ -0.91
VIM-206ENST00000487938 RYR3Q15413 4870 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms