RNA–Protein interactions for RNA: ENST00000474246.1

SMARCE1-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 2,124 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-208ENST00000474246 Q6ZTI0 123 aa3.58□□□□□ -1.84
SMARCE1-208ENST00000474246 TRBV6-4A0A1B0GX49 114 aa3.57□□□□□ -1.84
SMARCE1-208ENST00000474246 IGKV4-1P06312 121 aa3.57□□□□□ -1.84
SMARCE1-208ENST00000474246 Q5VSD8 79 aa3.57□□□□□ -1.84
SMARCE1-208ENST00000474246 LINC00472Q9H8W2 130 aa3.57□□□□□ -1.84
SMARCE1-208ENST00000474246 KRTAP20-1Q3LI63 56 aa3.56□□□□□ -1.84
SMARCE1-208ENST00000474246 SMIM2Q9BVW6 85 aa3.56□□□□□ -1.84
SMARCE1-208ENST00000474246 LRP1BQ9NZR2 4599 aa3.56□□□□□ -1.84
SMARCE1-208ENST00000474246 NBDYA0A0U1RRE5 68 aa3.56□□□□□ -1.84
SMARCE1-208ENST00000474246 PKHD1L1Q86WI1 4243 aa3.55□□□□□ -1.84
SMARCE1-208ENST00000474246 IGLV4-60A0A075B6I1 120 aa3.55□□□□□ -1.84
SMARCE1-208ENST00000474246 A0A087WYN8 130 aa3.55□□□□□ -1.84
SMARCE1-208ENST00000474246 COX7BP24311 80 aa3.55□□□□□ -1.84
SMARCE1-208ENST00000474246 TRGV1A0A0A0MS02 117 aa3.54□□□□□ -1.84
SMARCE1-208ENST00000474246 R4GN34 69 aa3.54□□□□□ -1.84
SMARCE1-208ENST00000474246 IGKV2-29A2NJV5 120 aaPredicted RBP3.53□□□□□ -1.84
SMARCE1-208ENST00000474246 APOBP04114 4563 aaKnown RBP3.53□□□□□ -1.84
SMARCE1-208ENST00000474246 GPR98Q8WXG9 6306 aa3.53□□□□□ -1.84
SMARCE1-208ENST00000474246 NEBP20929 6669 aa3.53□□□□□ -1.84
SMARCE1-208ENST00000474246 DNAH2Q9P225 4427 aa3.53□□□□□ -1.84
SMARCE1-208ENST00000474246 LINC00308Q8TCZ7 52 aa3.53□□□□□ -1.84
SMARCE1-208ENST00000474246 A0A1B0GU69 56 aa3.52□□□□□ -1.85
SMARCE1-208ENST00000474246 RPL37AP61513 92 aaKnown RBP3.52□□□□□ -1.85
SMARCE1-208ENST00000474246 FAT1Q14517 4588 aa3.52□□□□□ -1.85
SMARCE1-208ENST00000474246 A0A1W2PNN7 141 aa3.52□□□□□ -1.85
SMARCE1-208ENST00000474246 Q96NJ1 140 aa3.52□□□□□ -1.85
SMARCE1-208ENST00000474246 DNAH17Q9UFH2 4485 aa3.51□□□□□ -1.85
SMARCE1-208ENST00000474246 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.5□□□□□ -1.85
SMARCE1-208ENST00000474246 COX14Q96I36 57 aa3.5□□□□□ -1.85
SMARCE1-208ENST00000474246 C5orf56Q8N8D9 126 aa3.5□□□□□ -1.85
SMARCE1-208ENST00000474246 DNAH6Q9C0G6 4158 aa3.5□□□□□ -1.85
SMARCE1-208ENST00000474246 A0A0J9YWU9 116 aa3.49□□□□□ -1.85
SMARCE1-208ENST00000474246 NDUFA1O15239 70 aa3.49□□□□□ -1.85
SMARCE1-208ENST00000474246 DEFB110Q30KQ9 67 aa3.49□□□□□ -1.85
SMARCE1-208ENST00000474246 FAT3Q8TDW7 4589 aa3.48□□□□□ -1.85
SMARCE1-208ENST00000474246 LRP2P98164 4655 aa3.48□□□□□ -1.85
SMARCE1-208ENST00000474246 LY6EQ16553 131 aa3.48□□□□□ -1.85
SMARCE1-208ENST00000474246 VPS13DQ5THJ4 4388 aa3.47□□□□□ -1.85
SMARCE1-208ENST00000474246 H3BSH0 61 aa3.47□□□□□ -1.85
SMARCE1-208ENST00000474246 MRPL33O75394 65 aaKnown RBP3.47□□□□□ -1.85
SMARCE1-208ENST00000474246 VPS13BQ7Z7G8 4022 aa3.46□□□□□ -1.85
SMARCE1-208ENST00000474246 IGKV2-30P06310 120 aa3.46□□□□□ -1.86
SMARCE1-208ENST00000474246 LINC00304Q8N9R0 145 aa3.46□□□□□ -1.86
SMARCE1-208ENST00000474246 LINC00158P58513 81 aa3.46□□□□□ -1.86
SMARCE1-208ENST00000474246 LINC00612Q8N6U2 182 aa3.46□□□□□ -1.86
SMARCE1-208ENST00000474246 SMIM11BQ8TCY0 68 aa3.45□□□□□ -1.86
SMARCE1-208ENST00000474246 A0A0G2JQZ4 141 aa3.44□□□□□ -1.86
SMARCE1-208ENST00000474246 ACYP2P14621 99 aa3.44□□□□□ -1.86
SMARCE1-208ENST00000474246 DEFB131BA0A096LNP1 70 aa3.44□□□□□ -1.86
SMARCE1-208ENST00000474246 CCL22O00626 93 aa3.44□□□□□ -1.86
SMARCE1-208ENST00000474246 CRIP1P50238 77 aa3.44□□□□□ -1.86
SMARCE1-208ENST00000474246 PKD1P98161 4303 aa3.44□□□□□ -1.86
SMARCE1-208ENST00000474246 Q6ZQY7 126 aa3.43□□□□□ -1.86
SMARCE1-208ENST00000474246 DEFB104AQ8WTQ1 72 aa3.43□□□□□ -1.86
SMARCE1-208ENST00000474246 IGLV6-57P01721 117 aa3.43□□□□□ -1.86
SMARCE1-208ENST00000474246 TPRXLQ17RH7 258 aa3.42□□□□□ -1.86
SMARCE1-208ENST00000474246 SYNE2Q8WXH0 6885 aaKnown RBP3.42□□□□□ -1.86
SMARCE1-208ENST00000474246 LINC00315P59091 139 aa3.41□□□□□ -1.86
SMARCE1-208ENST00000474246 SPACA4Q8TDM5 124 aa3.41□□□□□ -1.86
SMARCE1-208ENST00000474246 HRES1P13985 223 aa3.41□□□□□ -1.86
SMARCE1-208ENST00000474246 C10orf55Q5SWW7 151 aa3.4□□□□□ -1.86
SMARCE1-208ENST00000474246 DEFB108BQ8NET1 73 aa3.39□□□□□ -1.87
SMARCE1-208ENST00000474246 KRTAP11-1Q8IUC1 163 aa3.38□□□□□ -1.87
SMARCE1-208ENST00000474246 Q8N9L7 120 aa3.38□□□□□ -1.87
SMARCE1-208ENST00000474246 DNAH5Q8TE73 4624 aa3.37□□□□□ -1.87
SMARCE1-208ENST00000474246 SSBP3-AS1Q7Z2R9 100 aa3.37□□□□□ -1.87
SMARCE1-208ENST00000474246 Q8IZM0 81 aa3.37□□□□□ -1.87
SMARCE1-208ENST00000474246 M0R2N4 97 aa3.36□□□□□ -1.87
SMARCE1-208ENST00000474246 DEFB134Q4QY38 66 aa3.36□□□□□ -1.87
SMARCE1-208ENST00000474246 H3BRN7 92 aa3.35□□□□□ -1.87
SMARCE1-208ENST00000474246 RPS27P42677 84 aaKnown RBP3.35□□□□□ -1.87
SMARCE1-208ENST00000474246 PRB3Q04118 309 aaPredicted RBP3.35□□□□□ -1.87
SMARCE1-208ENST00000474246 ANAPC11Q9NYG5 84 aa3.35□□□□□ -1.87
SMARCE1-208ENST00000474246 CDKN2A-AS1Q9UH64 79 aa3.35□□□□□ -1.87
SMARCE1-208ENST00000474246 IGKV2-28A0A075B6P5 120 aa3.35□□□□□ -1.87
SMARCE1-208ENST00000474246 IGKV2D-24A0A075B6R9 120 aa3.35□□□□□ -1.87
SMARCE1-208ENST00000474246 IGKV2D-28P01615 120 aa3.35□□□□□ -1.87
SMARCE1-208ENST00000474246 POLR2KP53803 58 aaKnown RBP3.35□□□□□ -1.87
SMARCE1-208ENST00000474246 KRTAP6-3Q3LI67 103 aa3.34□□□□□ -1.88
SMARCE1-208ENST00000474246 LYNX1G3V0Z9 82 aa3.33□□□□□ -1.88
SMARCE1-208ENST00000474246 LYNX1P0DP58 116 aa3.33□□□□□ -1.88
SMARCE1-208ENST00000474246 INE1O15225 51 aa3.32□□□□□ -1.88
SMARCE1-208ENST00000474246 H0YGG7 62 aa3.31□□□□□ -1.88
SMARCE1-208ENST00000474246 ANGP03950 147 aaKnown RBP3.31□□□□□ -1.88
SMARCE1-208ENST00000474246 SPINK9Q5DT21 86 aa3.31□□□□□ -1.88
SMARCE1-208ENST00000474246 LINC00575Q6W349 94 aa3.31□□□□□ -1.88
SMARCE1-208ENST00000474246 IGKV2D-30A0A075B6S6 120 aa3.31□□□□□ -1.88
SMARCE1-208ENST00000474246 PIGYQ3MUY2 71 aa3.31□□□□□ -1.88
SMARCE1-208ENST00000474246 RPL39P62891 51 aaKnown RBP3.3□□□□□ -1.88
SMARCE1-208ENST00000474246 BRD3OSQ6XYD6 125 aa3.3□□□□□ -1.88
SMARCE1-208ENST00000474246 SORL1Q92673 2214 aa3.29□□□□□ -1.88
SMARCE1-208ENST00000474246 G3V318 75 aa3.29□□□□□ -1.88
SMARCE1-208ENST00000474246 SMR3BP02814 79 aaPredicted RBP3.29□□□□□ -1.88
SMARCE1-208ENST00000474246 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.29□□□□□ -1.88
SMARCE1-208ENST00000474246 Q6ZRX8 168 aa3.29□□□□□ -1.88
SMARCE1-208ENST00000474246 PRCDQ00LT1 54 aa3.28□□□□□ -1.88
SMARCE1-208ENST00000474246 RPL39LQ96EH5 51 aaKnown RBP3.28□□□□□ -1.88
SMARCE1-208ENST00000474246 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.26□□□□□ -1.89
SMARCE1-208ENST00000474246 C14orf177Q52M58 125 aa3.26□□□□□ -1.89
SMARCE1-208ENST00000474246 PLAC4Q8WY50 150 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms