RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 HIVEP1P15822 2718 aa6.98□□□□□ -1.29
USP40-208ENST00000450966 KRTAP13-3Q3SY46 172 aa6.97□□□□□ -1.29
USP40-208ENST00000450966 SZT2Q5T011 3432 aa6.96□□□□□ -1.3
USP40-208ENST00000450966 LAMA1P25391 3075 aa6.96□□□□□ -1.3
USP40-208ENST00000450966 FRYLO94915 3013 aa6.96□□□□□ -1.3
USP40-208ENST00000450966 KRTAP15-1Q3LI76 137 aa6.93□□□□□ -1.3
USP40-208ENST00000450966 COL12A1Q99715 3063 aa6.93□□□□□ -1.3
USP40-208ENST00000450966 UTP20O75691 2785 aaKnown RBP6.91□□□□□ -1.3
USP40-208ENST00000450966 KRTAP1-4P0C5Y4 121 aa6.91□□□□□ -1.3
USP40-208ENST00000450966 DMXL2Q8TDJ6 3036 aa6.9□□□□□ -1.31
USP40-208ENST00000450966 ADGRG4Q8IZF6 3080 aa6.9□□□□□ -1.31
USP40-208ENST00000450966 TNRC18O15417 2968 aaPredicted RBP6.89□□□□□ -1.31
USP40-208ENST00000450966 TACC2O95359 2948 aa6.88□□□□□ -1.31
USP40-208ENST00000450966 XP32Q5T750 250 aa6.88□□□□□ -1.31
USP40-208ENST00000450966 APCP25054 2843 aa6.87□□□□□ -1.31
USP40-208ENST00000450966 A0A1B0GVY2 172 aa6.86□□□□□ -1.31
USP40-208ENST00000450966 KALRNO60229 2985 aa6.86□□□□□ -1.31
USP40-208ENST00000450966 INE1O15225 51 aa6.86□□□□□ -1.31
USP40-208ENST00000450966 NIPBLQ6KC79 2804 aaeCLIP6.85□□□□□ -1.31
USP40-208ENST00000450966 VCANP13611 3396 aa6.84□□□□□ -1.31
USP40-208ENST00000450966 CELSR3Q9NYQ7 3312 aa6.83□□□□□ -1.32
USP40-208ENST00000450966 NBEAQ8NFP9 2946 aa6.83□□□□□ -1.32
USP40-208ENST00000450966 BOD1L1Q8NFC6 3051 aa6.82□□□□□ -1.32
USP40-208ENST00000450966 TENM4Q6N022 2769 aa6.8□□□□□ -1.32
USP40-208ENST00000450966 LRBAP50851 2863 aa6.8□□□□□ -1.32
USP40-208ENST00000450966 PRO2289Q9P1D8 64 aa6.79□□□□□ -1.32
USP40-208ENST00000450966 ZZEF1O43149 2961 aa6.79□□□□□ -1.32
USP40-208ENST00000450966 EYSQ5T1H1 3165 aa6.77□□□□□ -1.33
USP40-208ENST00000450966 KRTAP12-2P59991 146 aa6.77□□□□□ -1.33
USP40-208ENST00000450966 COL6A3P12111 3177 aa6.76□□□□□ -1.33
USP40-208ENST00000450966 ZANQ9Y493 2812 aa6.72□□□□□ -1.33
USP40-208ENST00000450966 KRTAP10-10P60014 251 aa6.69□□□□□ -1.34
USP40-208ENST00000450966 KRTAP13-4Q3LI77 160 aa6.69□□□□□ -1.34
USP40-208ENST00000450966 DNAH14Q0VDD8 3507 aa6.69□□□□□ -1.34
USP40-208ENST00000450966 KRTAP12-1P59990 96 aa6.67□□□□□ -1.34
USP40-208ENST00000450966 DMXL1Q9Y485 3027 aa6.67□□□□□ -1.34
USP40-208ENST00000450966 HRNRQ86YZ3 2850 aaPredicted RBP6.66□□□□□ -1.34
USP40-208ENST00000450966 FREM2Q5SZK8 3169 aa6.66□□□□□ -1.34
USP40-208ENST00000450966 CELSR2Q9HCU4 2923 aa6.65□□□□□ -1.35
USP40-208ENST00000450966 REV3LO60673 3130 aa6.6□□□□□ -1.35
USP40-208ENST00000450966 ASH1LQ9NR48 2969 aaKnown RBP6.6□□□□□ -1.35
USP40-208ENST00000450966 DCHS2Q6V1P9 2916 aa6.59□□□□□ -1.35
USP40-208ENST00000450966 SPTBN5Q9NRC6 3674 aaKnown RBP6.55□□□□□ -1.36
USP40-208ENST00000450966 USP34Q70CQ2 3546 aa6.53□□□□□ -1.36
USP40-208ENST00000450966 CRYBG3Q68DQ2 2970 aa6.53□□□□□ -1.36
USP40-208ENST00000450966 NF1P21359 2839 aa6.51□□□□□ -1.37
USP40-208ENST00000450966 CFAP47Q6ZTR5 3102 aa6.49□□□□□ -1.37
USP40-208ENST00000450966 FBN2P35556 2912 aa6.47□□□□□ -1.37
USP40-208ENST00000450966 LOC400499M0QZD8 3231 aa6.47□□□□□ -1.37
USP40-208ENST00000450966 TENM3Q9P273 2699 aa6.44□□□□□ -1.38
USP40-208ENST00000450966 KRTAP3-1Q9BYR8 98 aa6.42□□□□□ -1.38
USP40-208ENST00000450966 KRTAP10-6P60371 365 aaPredicted RBP6.41□□□□□ -1.38
USP40-208ENST00000450966 MXRA5Q9NR99 2828 aa6.41□□□□□ -1.38
USP40-208ENST00000450966 TENM1Q9UKZ4 2725 aa6.39□□□□□ -1.39
USP40-208ENST00000450966 SPEGQ15772 3267 aa6.39□□□□□ -1.39
USP40-208ENST00000450966 TENM2Q9NT68 2774 aa6.32□□□□□ -1.4
USP40-208ENST00000450966 TGP01266 2768 aa6.31□□□□□ -1.4
USP40-208ENST00000450966 PDZD2O15018 2839 aa6.28□□□□□ -1.4
USP40-208ENST00000450966 KRTAP23-1A1A580 65 aa6.27□□□□□ -1.41
USP40-208ENST00000450966 CELSR1Q9NYQ6 3014 aa6.26□□□□□ -1.41
USP40-208ENST00000450966 KRTAP3-2Q9BYR7 98 aa6.14□□□□□ -1.43
USP40-208ENST00000450966 DCHS1Q96JQ0 3298 aa6.13□□□□□ -1.43
USP40-208ENST00000450966 MYO15AQ9UKN7 3530 aa6.13□□□□□ -1.43
USP40-208ENST00000450966 RELNP78509 3460 aa6.12□□□□□ -1.43
USP40-208ENST00000450966 MT1HL1P0DM35 61 aa6.12□□□□□ -1.43
USP40-208ENST00000450966 OTOGQ6ZRI0 2925 aa6.1□□□□□ -1.43
USP40-208ENST00000450966 PKD1L1Q8TDX9 2849 aa6.05□□□□□ -1.44
USP40-208ENST00000450966 WDFY3Q8IZQ1 3526 aa5.99□□□□□ -1.45
USP40-208ENST00000450966 VWFP04275 2813 aa5.99□□□□□ -1.45
USP40-208ENST00000450966 KRTAP3-3Q9BYR6 98 aa5.99□□□□□ -1.45
USP40-208ENST00000450966 FBN1P35555 2871 aaKnown RBP5.95□□□□□ -1.46
USP40-208ENST00000450966 KRTAP10-4P60372 401 aaPredicted RBP5.94□□□□□ -1.46
USP40-208ENST00000450966 LAMA5O15230 3695 aa5.92□□□□□ -1.46
USP40-208ENST00000450966 MUC3AQ02505 3323 aa5.88□□□□□ -1.47
USP40-208ENST00000450966 ALMS1Q8TCU4 4167 aa5.87□□□□□ -1.47
USP40-208ENST00000450966 ANK3Q12955 4377 aaKnown RBP5.85□□□□□ -1.47
USP40-208ENST00000450966 ZFHX3Q15911 3703 aa5.85□□□□□ -1.47
USP40-208ENST00000450966 NBPF19A0A087WUL8 3843 aa5.83□□□□□ -1.48
USP40-208ENST00000450966 ASPMQ8IZT6 3477 aa5.83□□□□□ -1.48
USP40-208ENST00000450966 KRTAP4-5Q9BYR2 181 aa5.81□□□□□ -1.48
USP40-208ENST00000450966 ZFHX4Q86UP3 3567 aa5.8□□□□□ -1.48
USP40-208ENST00000450966 DMDP11532 3685 aa5.78□□□□□ -1.48
USP40-208ENST00000450966 FBN3Q75N90 2809 aa5.77□□□□□ -1.49
USP40-208ENST00000450966 SRRM2Q9UQ35 2752 aaKnown RBP5.77□□□□□ -1.49
USP40-208ENST00000450966 HUWE1Q7Z6Z7 4374 aaKnown RBP5.74□□□□□ -1.49
USP40-208ENST00000450966 KRTAP10-12P60413 245 aa5.73□□□□□ -1.49
USP40-208ENST00000450966 KRTAP12-3P60328 96 aa5.7□□□□□ -1.5
USP40-208ENST00000450966 MEGF8Q7Z7M0 2845 aa5.67□□□□□ -1.5
USP40-208ENST00000450966 SMG1Q96Q15 3661 aaKnown RBP5.66□□□□□ -1.5
USP40-208ENST00000450966 CSMD1Q96PZ7 3565 aa5.65□□□□□ -1.51
USP40-208ENST00000450966 CRCT1Q9UGL9 99 aa5.64□□□□□ -1.51
USP40-208ENST00000450966 LCE3AQ5TA76 89 aa5.62□□□□□ -1.51
USP40-208ENST00000450966 TRRAPQ9Y4A5 3859 aa5.57□□□□□ -1.52
USP40-208ENST00000450966 CSMD2Q7Z408 3487 aa5.56□□□□□ -1.52
USP40-208ENST00000450966 SPENQ96T58 3664 aaKnown RBP5.54□□□□□ -1.52
USP40-208ENST00000450966 BSNQ9UPA5 3926 aa5.53□□□□□ -1.52
USP40-208ENST00000450966 COL7A1Q02388 2944 aa5.51□□□□□ -1.53
USP40-208ENST00000450966 SVEP1Q4LDE5 3571 aa5.49□□□□□ -1.53
USP40-208ENST00000450966 DNAH1Q9P2D7 4330 aa5.44□□□□□ -1.54
USP40-208ENST00000450966 KRTAP8-1Q8IUC2 63 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms