RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 BOD1L1Q8NFC6 3051 aa9.59□□□□□ -0.87
PTPRF-209ENST00000438120 LRBAP50851 2863 aa9.58□□□□□ -0.88
PTPRF-209ENST00000438120 FRYLO94915 3013 aa9.57□□□□□ -0.88
PTPRF-209ENST00000438120 HIVEP1P15822 2718 aa9.57□□□□□ -0.88
PTPRF-209ENST00000438120 C20orf166-AS1Q96NR2 134 aa9.57□□□□□ -0.88
PTPRF-209ENST00000438120 CFAP47Q6ZTR5 3102 aa9.55□□□□□ -0.88
PTPRF-209ENST00000438120 FLNCQ14315 2725 aa9.54□□□□□ -0.88
PTPRF-209ENST00000438120 ADGRG4Q8IZF6 3080 aa9.53□□□□□ -0.88
PTPRF-209ENST00000438120 APCP25054 2843 aa9.52□□□□□ -0.89
PTPRF-209ENST00000438120 NBEAQ8NFP9 2946 aa9.51□□□□□ -0.89
PTPRF-209ENST00000438120 A6NN06 94 aa9.46□□□□□ -0.9
PTPRF-209ENST00000438120 KRTAP25-1Q3LHN0 102 aa9.45□□□□□ -0.9
PTPRF-209ENST00000438120 KMT2BQ9UMN6 2715 aaPredicted RBP9.43□□□□□ -0.9
PTPRF-209ENST00000438120 TENM4Q6N022 2769 aa9.4□□□□□ -0.9
PTPRF-209ENST00000438120 CELSR2Q9HCU4 2923 aa9.36□□□□□ -0.91
PTPRF-209ENST00000438120 ZZEF1O43149 2961 aa9.34□□□□□ -0.91
PTPRF-209ENST00000438120 SPEGQ15772 3267 aa9.31□□□□□ -0.92
PTPRF-209ENST00000438120 EYSQ5T1H1 3165 aa9.3□□□□□ -0.92
PTPRF-209ENST00000438120 TNP1P09430 55 aa9.26□□□□□ -0.93
PTPRF-209ENST00000438120 A0A1B0GVY2 172 aa9.26□□□□□ -0.93
PTPRF-209ENST00000438120 DCHS2Q6V1P9 2916 aa9.23□□□□□ -0.93
PTPRF-209ENST00000438120 NDUFAF8A1L188 74 aa9.23□□□□□ -0.93
PTPRF-209ENST00000438120 SPTBN5Q9NRC6 3674 aaKnown RBP9.22□□□□□ -0.93
PTPRF-209ENST00000438120 KRTAP16-1A8MUX0 517 aa9.22□□□□□ -0.93
PTPRF-209ENST00000438120 KRTAP21-3Q3LHN1 58 aa9.21□□□□□ -0.93
PTPRF-209ENST00000438120 NIPBLQ6KC79 2804 aaeCLIP9.21□□□□□ -0.93
PTPRF-209ENST00000438120 KRTAP1-4P0C5Y4 121 aa9.21□□□□□ -0.94
PTPRF-209ENST00000438120 USP34Q70CQ2 3546 aa9.2□□□□□ -0.94
PTPRF-209ENST00000438120 XP32Q5T750 250 aa9.2□□□□□ -0.94
PTPRF-209ENST00000438120 C10orf95Q9H7T3 257 aa9.19□□□□□ -0.94
PTPRF-209ENST00000438120 KRTAP10-8P60410 259 aa9.13□□□□□ -0.95
PTPRF-209ENST00000438120 ZANQ9Y493 2812 aa9.11□□□□□ -0.95
PTPRF-209ENST00000438120 DMXL1Q9Y485 3027 aa9.04□□□□□ -0.96
PTPRF-209ENST00000438120 TNRC18O15417 2968 aaPredicted RBP8.98□□□□□ -0.97
PTPRF-209ENST00000438120 FBN2P35556 2912 aa8.96□□□□□ -0.98
PTPRF-209ENST00000438120 H0YAA0 97 aa8.95□□□□□ -0.98
PTPRF-209ENST00000438120 TENM1Q9UKZ4 2725 aa8.95□□□□□ -0.98
PTPRF-209ENST00000438120 NF1P21359 2839 aa8.94□□□□□ -0.98
PTPRF-209ENST00000438120 KRTAP10-10P60014 251 aa8.94□□□□□ -0.98
PTPRF-209ENST00000438120 LOC400499M0QZD8 3231 aa8.93□□□□□ -0.98
PTPRF-209ENST00000438120 HRNRQ86YZ3 2850 aaPredicted RBP8.93□□□□□ -0.98
PTPRF-209ENST00000438120 TPRXLQ17RH7 258 aa8.92□□□□□ -0.98
PTPRF-209ENST00000438120 TENM3Q9P273 2699 aa8.92□□□□□ -0.98
PTPRF-209ENST00000438120 MYO15AQ9UKN7 3530 aa8.91□□□□□ -0.98
PTPRF-209ENST00000438120 TENM2Q9NT68 2774 aa8.9□□□□□ -0.99
PTPRF-209ENST00000438120 PP632Q6XCG6 107 aa8.84□□□□□ -0.99
PTPRF-209ENST00000438120 P0C880 135 aa8.83□□□□□ -1
PTPRF-209ENST00000438120 KRTAP13-3Q3SY46 172 aa8.83□□□□□ -1
PTPRF-209ENST00000438120 CELSR1Q9NYQ6 3014 aa8.79□□□□□ -1
PTPRF-209ENST00000438120 WDFY3Q8IZQ1 3526 aa8.75□□□□□ -1.01
PTPRF-209ENST00000438120 PKD1L1Q8TDX9 2849 aa8.71□□□□□ -1.02
PTPRF-209ENST00000438120 RELNP78509 3460 aa8.71□□□□□ -1.02
PTPRF-209ENST00000438120 TGP01266 2768 aa8.68□□□□□ -1.02
PTPRF-209ENST00000438120 PRO2289Q9P1D8 64 aa8.66□□□□□ -1.02
PTPRF-209ENST00000438120 DCHS1Q96JQ0 3298 aa8.62□□□□□ -1.03
PTPRF-209ENST00000438120 VWFP04275 2813 aa8.61□□□□□ -1.03
PTPRF-209ENST00000438120 ASPMQ8IZT6 3477 aa8.6□□□□□ -1.03
PTPRF-209ENST00000438120 MXRA5Q9NR99 2828 aa8.57□□□□□ -1.04
PTPRF-209ENST00000438120 ZFHX4Q86UP3 3567 aa8.5□□□□□ -1.05
PTPRF-209ENST00000438120 KRTAP12-2P59991 146 aa8.49□□□□□ -1.05
PTPRF-209ENST00000438120 NBPF19A0A087WUL8 3843 aa8.47□□□□□ -1.05
PTPRF-209ENST00000438120 PDZD2O15018 2839 aa8.45□□□□□ -1.06
PTPRF-209ENST00000438120 LAMA5O15230 3695 aa8.43□□□□□ -1.06
PTPRF-209ENST00000438120 CSMD1Q96PZ7 3565 aa8.34□□□□□ -1.07
PTPRF-209ENST00000438120 FBN1P35555 2871 aaKnown RBP8.27□□□□□ -1.09
PTPRF-209ENST00000438120 KRTAP12-1P59990 96 aa8.26□□□□□ -1.09
PTPRF-209ENST00000438120 KRTAP3-1Q9BYR8 98 aa8.26□□□□□ -1.09
PTPRF-209ENST00000438120 ZFHX3Q15911 3703 aa8.25□□□□□ -1.09
PTPRF-209ENST00000438120 KRTAP13-4Q3LI77 160 aa8.24□□□□□ -1.09
PTPRF-209ENST00000438120 SRRM2Q9UQ35 2752 aaKnown RBP8.21□□□□□ -1.09
PTPRF-209ENST00000438120 SMG1Q96Q15 3661 aaKnown RBP8.13□□□□□ -1.11
PTPRF-209ENST00000438120 DMDP11532 3685 aa8.12□□□□□ -1.11
PTPRF-209ENST00000438120 OTOGQ6ZRI0 2925 aa8.07□□□□□ -1.12
PTPRF-209ENST00000438120 SVEP1Q4LDE5 3571 aa8.05□□□□□ -1.12
PTPRF-209ENST00000438120 KRTAP15-1Q3LI76 137 aa8.03□□□□□ -1.12
PTPRF-209ENST00000438120 FBN3Q75N90 2809 aa8.03□□□□□ -1.12
PTPRF-209ENST00000438120 CUBNO60494 3623 aa8.02□□□□□ -1.13
PTPRF-209ENST00000438120 ANK3Q12955 4377 aaKnown RBP8.01□□□□□ -1.13
PTPRF-209ENST00000438120 CSMD2Q7Z408 3487 aa8.01□□□□□ -1.13
PTPRF-209ENST00000438120 KRTAP10-6P60371 365 aaPredicted RBP7.99□□□□□ -1.13
PTPRF-209ENST00000438120 MEGF8Q7Z7M0 2845 aa7.94□□□□□ -1.14
PTPRF-209ENST00000438120 MT1HL1P0DM35 61 aa7.88□□□□□ -1.15
PTPRF-209ENST00000438120 MUC3AQ02505 3323 aa7.88□□□□□ -1.15
PTPRF-209ENST00000438120 COL7A1Q02388 2944 aa7.87□□□□□ -1.15
PTPRF-209ENST00000438120 TRRAPQ9Y4A5 3859 aa7.85□□□□□ -1.15
PTPRF-209ENST00000438120 SPENQ96T58 3664 aaKnown RBP7.83□□□□□ -1.16
PTPRF-209ENST00000438120 KRTAP4-5Q9BYR2 181 aa7.8□□□□□ -1.16
PTPRF-209ENST00000438120 CRCT1Q9UGL9 99 aa7.78□□□□□ -1.16
PTPRF-209ENST00000438120 KRTAP3-3Q9BYR6 98 aa7.7□□□□□ -1.18
PTPRF-209ENST00000438120 KRTAP3-2Q9BYR7 98 aa7.68□□□□□ -1.18
PTPRF-209ENST00000438120 KRTAP10-12P60413 245 aa7.65□□□□□ -1.18
PTPRF-209ENST00000438120 HUWE1Q7Z6Z7 4374 aaKnown RBP7.63□□□□□ -1.19
PTPRF-209ENST00000438120 KRTAP10-4P60372 401 aaPredicted RBP7.6□□□□□ -1.19
PTPRF-209ENST00000438120 BSNQ9UPA5 3926 aa7.45□□□□□ -1.22
PTPRF-209ENST00000438120 VPS13CQ709C8 3753 aa7.44□□□□□ -1.22
PTPRF-209ENST00000438120 KRTAP12-3P60328 96 aa7.43□□□□□ -1.22
PTPRF-209ENST00000438120 LORP23490 312 aaPredicted RBP7.42□□□□□ -1.22
PTPRF-209ENST00000438120 LCE3AQ5TA76 89 aa7.4□□□□□ -1.22
PTPRF-209ENST00000438120 CSMD3Q7Z407 3707 aa7.39□□□□□ -1.23
PTPRF-209ENST00000438120 ALMS1Q8TCU4 4167 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms