RNA–Protein interactions for RNA: ENST00000399084.5

HLA-DQB1-204, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

APPRIS P1 BASIC

Gene HLA-DQB1, Length 1,734 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-204ENST00000399084 LIMD2Q9BT23 127 aa10.33□□□□□ -0.76
HLA-DQB1-204ENST00000399084 RYR2Q92736 4967 aa10.32□□□□□ -0.76
HLA-DQB1-204ENST00000399084 KRTAP13-2Q52LG2 175 aa10.32□□□□□ -0.76
HLA-DQB1-204ENST00000399084 FRAS1Q86XX4 4008 aa10.31□□□□□ -0.76
HLA-DQB1-204ENST00000399084 A0A087X002 238 aa10.31□□□□□ -0.76
HLA-DQB1-204ENST00000399084 KRTAP1-4P0C5Y4 121 aa10.3□□□□□ -0.76
HLA-DQB1-204ENST00000399084 SPINK6Q6UWN8 80 aa10.29□□□□□ -0.76
HLA-DQB1-204ENST00000399084 DNAH11Q96DT5 4516 aa10.29□□□□□ -0.76
HLA-DQB1-204ENST00000399084 NDUFS5O43920 106 aa10.28□□□□□ -0.76
HLA-DQB1-204ENST00000399084 FP248Q71RG6 208 aaPredicted RBP10.28□□□□□ -0.76
HLA-DQB1-204ENST00000399084 SVIPQ8NHG7 77 aa10.28□□□□□ -0.76
HLA-DQB1-204ENST00000399084 C4orf48Q5BLP8 95 aa10.25□□□□□ -0.77
HLA-DQB1-204ENST00000399084 KRTAP17-1Q9BYP8 105 aa10.25□□□□□ -0.77
HLA-DQB1-204ENST00000399084 DNAH5Q8TE73 4624 aa10.25□□□□□ -0.77
HLA-DQB1-204ENST00000399084 PLA2G1BP04054 148 aaKnown RBP10.24□□□□□ -0.77
HLA-DQB1-204ENST00000399084 C4orf26Q17RF5 130 aa10.24□□□□□ -0.77
HLA-DQB1-204ENST00000399084 IGLV7-46A0A075B6I9 117 aa10.24□□□□□ -0.77
HLA-DQB1-204ENST00000399084 SPINK1P00995 79 aa10.24□□□□□ -0.77
HLA-DQB1-204ENST00000399084 C1orf195Q5TG92 126 aa10.24□□□□□ -0.77
HLA-DQB1-204ENST00000399084 PKD1P98161 4303 aa10.23□□□□□ -0.77
HLA-DQB1-204ENST00000399084 LINC00313P59037 77 aa10.23□□□□□ -0.77
HLA-DQB1-204ENST00000399084 NOTCH2NLQ7Z3S9 236 aa10.23□□□□□ -0.77
HLA-DQB1-204ENST00000399084 LOC101927531A0A1B0GV80 90 aa10.22□□□□□ -0.77
HLA-DQB1-204ENST00000399084 RPS29P62273 56 aaKnown RBP10.21□□□□□ -0.77
HLA-DQB1-204ENST00000399084 SACSQ9NZJ4 4579 aa10.21□□□□□ -0.77
HLA-DQB1-204ENST00000399084 TYMSOSQ8TAI1 123 aa10.2□□□□□ -0.78
HLA-DQB1-204ENST00000399084 SPAG11AQ6PDA7 123 aa10.19□□□□□ -0.78
HLA-DQB1-204ENST00000399084 FAT2Q9NYQ8 4349 aa10.19□□□□□ -0.78
HLA-DQB1-204ENST00000399084 A0A1B0GVY2 172 aa10.17□□□□□ -0.78
HLA-DQB1-204ENST00000399084 Q8N9P0 234 aaPredicted RBP10.17□□□□□ -0.78
HLA-DQB1-204ENST00000399084 Q1T7F1 81 aa10.16□□□□□ -0.78
HLA-DQB1-204ENST00000399084 V9GYY9 64 aa10.16□□□□□ -0.78
HLA-DQB1-204ENST00000399084 FAM229AH3BQW9 127 aa10.15□□□□□ -0.78
HLA-DQB1-204ENST00000399084 KRTAP13-3Q3SY46 172 aa10.15□□□□□ -0.78
HLA-DQB1-204ENST00000399084 PRR4Q16378 134 aa10.14□□□□□ -0.79
HLA-DQB1-204ENST00000399084 HYDINQ4G0P3 5121 aa10.1□□□□□ -0.79
HLA-DQB1-204ENST00000399084 LRP1BQ9NZR2 4599 aa10.1□□□□□ -0.79
HLA-DQB1-204ENST00000399084 PCOTHQ58A44 107 aa10.09□□□□□ -0.79
HLA-DQB1-204ENST00000399084 MPLKIPQ8TAP9 179 aa10.08□□□□□ -0.8
HLA-DQB1-204ENST00000399084 Q5W150 140 aa10.07□□□□□ -0.8
HLA-DQB1-204ENST00000399084 LINC00304Q8N9R0 145 aa10.07□□□□□ -0.8
HLA-DQB1-204ENST00000399084 KRTAP16-1A8MUX0 517 aa10.05□□□□□ -0.8
HLA-DQB1-204ENST00000399084 COA5Q86WW8 74 aa10.02□□□□□ -0.8
HLA-DQB1-204ENST00000399084 PRR26Q8N8Z3 221 aa10.02□□□□□ -0.81
HLA-DQB1-204ENST00000399084 VPS13BQ7Z7G8 4022 aa9.99□□□□□ -0.81
HLA-DQB1-204ENST00000399084 KRTAP10-4P60372 401 aaPredicted RBP9.99□□□□□ -0.81
HLA-DQB1-204ENST00000399084 SMR3BP02814 79 aaPredicted RBP9.97□□□□□ -0.81
HLA-DQB1-204ENST00000399084 IGKV2-30P06310 120 aa9.96□□□□□ -0.81
HLA-DQB1-204ENST00000399084 PRO0628Q9UI54 55 aa9.94□□□□□ -0.82
HLA-DQB1-204ENST00000399084 ACYP2P14621 99 aa9.93□□□□□ -0.82
HLA-DQB1-204ENST00000399084 HERC2O95714 4834 aa9.92□□□□□ -0.82
HLA-DQB1-204ENST00000399084 HRES1P13985 223 aa9.9□□□□□ -0.82
HLA-DQB1-204ENST00000399084 DMAC1Q96GE9 116 aa9.88□□□□□ -0.83
HLA-DQB1-204ENST00000399084 PCLOQ9Y6V0 5065 aa9.88□□□□□ -0.83
HLA-DQB1-204ENST00000399084 PKHD1P08F94 4074 aa9.84□□□□□ -0.83
HLA-DQB1-204ENST00000399084 PSPHP1O15172 72 aa9.83□□□□□ -0.84
HLA-DQB1-204ENST00000399084 LINC01558Q9Y6Z2 57 aa9.83□□□□□ -0.84
HLA-DQB1-204ENST00000399084 BRK1Q8WUW1 75 aa9.82□□□□□ -0.84
HLA-DQB1-204ENST00000399084 A8MUN3 132 aa9.82□□□□□ -0.84
HLA-DQB1-204ENST00000399084 DYNC1H1Q14204 4646 aaKnown RBP9.81□□□□□ -0.84
HLA-DQB1-204ENST00000399084 RETNLBQ9BQ08 111 aa9.79□□□□□ -0.84
HLA-DQB1-204ENST00000399084 Q5VV11 94 aa9.78□□□□□ -0.84
HLA-DQB1-204ENST00000399084 C20orf166-AS1Q96NR2 134 aa9.78□□□□□ -0.84
HLA-DQB1-204ENST00000399084 A8MUU9 505 aa9.77□□□□□ -0.85
HLA-DQB1-204ENST00000399084 C7orf65Q6ZTY9 151 aa9.77□□□□□ -0.85
HLA-DQB1-204ENST00000399084 Q75L30 129 aa9.77□□□□□ -0.85
HLA-DQB1-204ENST00000399084 RYR1P21817 5038 aa9.77□□□□□ -0.85
HLA-DQB1-204ENST00000399084 PRR15LQ9BU68 103 aa9.76□□□□□ -0.85
HLA-DQB1-204ENST00000399084 IGKV2D-30A0A075B6S6 120 aa9.76□□□□□ -0.85
HLA-DQB1-204ENST00000399084 CHKB-CPT1BH3BT56 60 aa9.74□□□□□ -0.85
HLA-DQB1-204ENST00000399084 APOBP04114 4563 aaKnown RBP9.71□□□□□ -0.86
HLA-DQB1-204ENST00000399084 KRTAP10-8P60410 259 aa9.69□□□□□ -0.86
HLA-DQB1-204ENST00000399084 KIAA1109Q2LD37 5005 aa9.67□□□□□ -0.86
HLA-DQB1-204ENST00000399084 Q5VSD8 79 aa9.65□□□□□ -0.87
HLA-DQB1-204ENST00000399084 PKHD1L1Q86WI1 4243 aa9.63□□□□□ -0.87
HLA-DQB1-204ENST00000399084 C9orf92A6NGG3 77 aa9.62□□□□□ -0.87
HLA-DQB1-204ENST00000399084 Q8N1X5 172 aa9.59□□□□□ -0.87
HLA-DQB1-204ENST00000399084 A6NED7 52 aa9.59□□□□□ -0.87
HLA-DQB1-204ENST00000399084 FAT1Q14517 4588 aa9.58□□□□□ -0.88
HLA-DQB1-204ENST00000399084 FLG2Q5D862 2391 aaPredicted RBP9.54□□□□□ -0.88
HLA-DQB1-204ENST00000399084 SPTSSBQ8NFR3 76 aa9.54□□□□□ -0.88
HLA-DQB1-204ENST00000399084 CDC42SE1Q9NRR8 79 aa9.54□□□□□ -0.88
HLA-DQB1-204ENST00000399084 ABCA13Q86UQ4 5058 aa9.52□□□□□ -0.89
HLA-DQB1-204ENST00000399084 A0A1B0GU69 56 aa9.51□□□□□ -0.89
HLA-DQB1-204ENST00000399084 SPINK7P58062 85 aa9.5□□□□□ -0.89
HLA-DQB1-204ENST00000399084 ATP11AUNQ6ZP68 121 aa9.5□□□□□ -0.89
HLA-DQB1-204ENST00000399084 LCA10Q71F78 164 aa9.46□□□□□ -0.89
HLA-DQB1-204ENST00000399084 RPL37P61927 97 aaKnown RBP9.4□□□□□ -0.9
HLA-DQB1-204ENST00000399084 KRTAP4-5Q9BYR2 181 aa9.39□□□□□ -0.91
HLA-DQB1-204ENST00000399084 SEC61GP60059 68 aa9.38□□□□□ -0.91
HLA-DQB1-204ENST00000399084 COX6B2Q6YFQ2 88 aa9.38□□□□□ -0.91
HLA-DQB1-204ENST00000399084 HSPG2P98160 4391 aa9.36□□□□□ -0.91
HLA-DQB1-204ENST00000399084 UQCR11O14957 56 aa9.35□□□□□ -0.91
HLA-DQB1-204ENST00000399084 MT1HL1P0DM35 61 aa9.35□□□□□ -0.91
HLA-DQB1-204ENST00000399084 PMAIP1Q13794 54 aa9.35□□□□□ -0.91
HLA-DQB1-204ENST00000399084 KRTAP3-1Q9BYR8 98 aa9.34□□□□□ -0.91
HLA-DQB1-204ENST00000399084 A8MU10 97 aa9.33□□□□□ -0.92
HLA-DQB1-204ENST00000399084 TNXBP22105 4242 aa9.32□□□□□ -0.92
HLA-DQB1-204ENST00000399084 XP32Q5T750 250 aa9.31□□□□□ -0.92
HLA-DQB1-204ENST00000399084 SPATA8Q6RVD6 105 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms