RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 FLG2Q5D862 2391 aaPredicted RBP6.55□□□□□ -1.36
HPS4-202ENST00000398145 A6NN06 94 aa6.55□□□□□ -1.36
HPS4-202ENST00000398145 A8MU10 97 aa6.55□□□□□ -1.36
HPS4-202ENST00000398145 KRTAP11-1Q8IUC1 163 aa6.54□□□□□ -1.36
HPS4-202ENST00000398145 CRYBG3Q68DQ2 2970 aa6.54□□□□□ -1.36
HPS4-202ENST00000398145 A0A087X002 238 aa6.54□□□□□ -1.36
HPS4-202ENST00000398145 NOTCH2NLQ7Z3S9 236 aa6.54□□□□□ -1.36
HPS4-202ENST00000398145 ASB16-AS1Q495Z4 193 aa6.53□□□□□ -1.36
HPS4-202ENST00000398145 H3BS24 57 aa6.52□□□□□ -1.36
HPS4-202ENST00000398145 KMT2BQ9UMN6 2715 aaPredicted RBP6.49□□□□□ -1.37
HPS4-202ENST00000398145 SPATA8Q6RVD6 105 aa6.49□□□□□ -1.37
HPS4-202ENST00000398145 SPENQ96T58 3664 aaKnown RBP6.46□□□□□ -1.37
HPS4-202ENST00000398145 RELNP78509 3460 aa6.46□□□□□ -1.38
HPS4-202ENST00000398145 KRTAP13-1Q8IUC0 172 aa6.43□□□□□ -1.38
HPS4-202ENST00000398145 SMG1Q96Q15 3661 aaKnown RBP6.42□□□□□ -1.38
HPS4-202ENST00000398145 Q6ZRN7 208 aaPredicted RBP6.38□□□□□ -1.39
HPS4-202ENST00000398145 H1FX-AS1Q4G0G2 97 aa6.37□□□□□ -1.39
HPS4-202ENST00000398145 ADM2Q7Z4H4 148 aa6.37□□□□□ -1.39
HPS4-202ENST00000398145 KRTAP10-2P60368 255 aa6.37□□□□□ -1.39
HPS4-202ENST00000398145 RPL37P61927 97 aaKnown RBP6.36□□□□□ -1.39
HPS4-202ENST00000398145 KRTAP10-1P60331 282 aa6.35□□□□□ -1.39
HPS4-202ENST00000398145 CELSR1Q9NYQ6 3014 aa6.35□□□□□ -1.39
HPS4-202ENST00000398145 CSMD1Q96PZ7 3565 aa6.33□□□□□ -1.4
HPS4-202ENST00000398145 ROMO1P60602 79 aa6.33□□□□□ -1.4
HPS4-202ENST00000398145 TENM3Q9P273 2699 aa6.31□□□□□ -1.4
HPS4-202ENST00000398145 S4R3F8 94 aa6.3□□□□□ -1.4
HPS4-202ENST00000398145 LUZP6Q538Z0 58 aa6.29□□□□□ -1.4
HPS4-202ENST00000398145 TENM4Q6N022 2769 aa6.29□□□□□ -1.4
HPS4-202ENST00000398145 COX6B2Q6YFQ2 88 aa6.28□□□□□ -1.4
HPS4-202ENST00000398145 Q6ZSA8 131 aa6.28□□□□□ -1.4
HPS4-202ENST00000398145 KRTAP25-1Q3LHN0 102 aa6.25□□□□□ -1.41
HPS4-202ENST00000398145 KRTAP13-2Q52LG2 175 aa6.25□□□□□ -1.41
HPS4-202ENST00000398145 PDZD2O15018 2839 aa6.22□□□□□ -1.41
HPS4-202ENST00000398145 J3QL48 77 aa6.2□□□□□ -1.42
HPS4-202ENST00000398145 CAMK2N1Q7Z7J9 78 aa6.19□□□□□ -1.42
HPS4-202ENST00000398145 RPS29P62273 56 aaKnown RBP6.18□□□□□ -1.42
HPS4-202ENST00000398145 SVEP1Q4LDE5 3571 aa6.18□□□□□ -1.42
HPS4-202ENST00000398145 TENM1Q9UKZ4 2725 aa6.17□□□□□ -1.42
HPS4-202ENST00000398145 R4GN34 69 aa6.17□□□□□ -1.42
HPS4-202ENST00000398145 ZFHX3Q15911 3703 aa6.16□□□□□ -1.42
HPS4-202ENST00000398145 VWFP04275 2813 aa6.15□□□□□ -1.42
HPS4-202ENST00000398145 CUBNO60494 3623 aa6.14□□□□□ -1.43
HPS4-202ENST00000398145 TGP01266 2768 aa6.13□□□□□ -1.43
HPS4-202ENST00000398145 CSMD2Q7Z408 3487 aa6.12□□□□□ -1.43
HPS4-202ENST00000398145 BSNQ9UPA5 3926 aa6.09□□□□□ -1.43
HPS4-202ENST00000398145 M0QZ58 72 aa6.07□□□□□ -1.44
HPS4-202ENST00000398145 A0A0A0MQY5 61 aa6.06□□□□□ -1.44
HPS4-202ENST00000398145 FBN1P35555 2871 aaKnown RBP6.05□□□□□ -1.44
HPS4-202ENST00000398145 A8MUU9 505 aa6.05□□□□□ -1.44
HPS4-202ENST00000398145 Q5VSD8 79 aa6.03□□□□□ -1.44
HPS4-202ENST00000398145 C20orf166-AS1Q96NR2 134 aa6.03□□□□□ -1.44
HPS4-202ENST00000398145 H0YAA0 97 aa6.01□□□□□ -1.45
HPS4-202ENST00000398145 PKD1L1Q8TDX9 2849 aa6.01□□□□□ -1.45
HPS4-202ENST00000398145 VPS13CQ709C8 3753 aa6□□□□□ -1.45
HPS4-202ENST00000398145 KRTAP1-4P0C5Y4 121 aa6□□□□□ -1.45
HPS4-202ENST00000398145 KRTAP13-3Q3SY46 172 aa6□□□□□ -1.45
HPS4-202ENST00000398145 KRTAP16-1A8MUX0 517 aa6□□□□□ -1.45
HPS4-202ENST00000398145 NDUFAF8A1L188 74 aa5.99□□□□□ -1.45
HPS4-202ENST00000398145 SEC61BP60468 96 aaKnown RBP5.98□□□□□ -1.45
HPS4-202ENST00000398145 OTOGQ6ZRI0 2925 aa5.94□□□□□ -1.46
HPS4-202ENST00000398145 TENM2Q9NT68 2774 aa5.92□□□□□ -1.46
HPS4-202ENST00000398145 SRRM2Q9UQ35 2752 aaKnown RBP5.87□□□□□ -1.47
HPS4-202ENST00000398145 C10orf95Q9H7T3 257 aa5.85□□□□□ -1.47
HPS4-202ENST00000398145 M0R2T5 61 aa5.83□□□□□ -1.48
HPS4-202ENST00000398145 FBN3Q75N90 2809 aa5.8□□□□□ -1.48
HPS4-202ENST00000398145 NBPF19A0A087WUL8 3843 aa5.8□□□□□ -1.48
HPS4-202ENST00000398145 XP32Q5T750 250 aa5.74□□□□□ -1.49
HPS4-202ENST00000398145 PLAC4Q8WY50 150 aa5.74□□□□□ -1.49
HPS4-202ENST00000398145 P0C880 135 aa5.72□□□□□ -1.49
HPS4-202ENST00000398145 MEGF8Q7Z7M0 2845 aa5.69□□□□□ -1.5
HPS4-202ENST00000398145 TRRAPQ9Y4A5 3859 aa5.68□□□□□ -1.5
HPS4-202ENST00000398145 ZNF469Q96JG9 3925 aaPredicted RBP5.66□□□□□ -1.5
HPS4-202ENST00000398145 PP632Q6XCG6 107 aa5.65□□□□□ -1.5
HPS4-202ENST00000398145 TNP1P09430 55 aa5.64□□□□□ -1.51
HPS4-202ENST00000398145 KRTAP3-1Q9BYR8 98 aa5.62□□□□□ -1.51
HPS4-202ENST00000398145 COL7A1Q02388 2944 aa5.6□□□□□ -1.51
HPS4-202ENST00000398145 ANK3Q12955 4377 aaKnown RBP5.59□□□□□ -1.51
HPS4-202ENST00000398145 KRTAP10-8P60410 259 aa5.56□□□□□ -1.52
HPS4-202ENST00000398145 TPRXLQ17RH7 258 aa5.55□□□□□ -1.52
HPS4-202ENST00000398145 KRTAP12-2P59991 146 aa5.54□□□□□ -1.52
HPS4-202ENST00000398145 KRTAP21-3Q3LHN1 58 aa5.52□□□□□ -1.53
HPS4-202ENST00000398145 KRTAP12-1P59990 96 aa5.49□□□□□ -1.53
HPS4-202ENST00000398145 KRTAP10-6P60371 365 aaPredicted RBP5.47□□□□□ -1.53
HPS4-202ENST00000398145 KRTAP13-4Q3LI77 160 aa5.46□□□□□ -1.54
HPS4-202ENST00000398145 A0A1B0GVY2 172 aa5.42□□□□□ -1.54
HPS4-202ENST00000398145 AKAP9Q99996 3911 aa5.41□□□□□ -1.54
HPS4-202ENST00000398145 CSMD3Q7Z407 3707 aa5.32□□□□□ -1.56
HPS4-202ENST00000398145 KRTAP3-2Q9BYR7 98 aa5.31□□□□□ -1.56
HPS4-202ENST00000398145 KRTAP3-3Q9BYR6 98 aa5.29□□□□□ -1.56
HPS4-202ENST00000398145 KRTAP15-1Q3LI76 137 aa5.27□□□□□ -1.57
HPS4-202ENST00000398145 HUWE1Q7Z6Z7 4374 aaKnown RBP5.23□□□□□ -1.57
HPS4-202ENST00000398145 KRTAP10-10P60014 251 aa5.18□□□□□ -1.58
HPS4-202ENST00000398145 KRTAP10-4P60372 401 aaPredicted RBP5.13□□□□□ -1.59
HPS4-202ENST00000398145 MT1HL1P0DM35 61 aa5.07□□□□□ -1.6
HPS4-202ENST00000398145 PRO2289Q9P1D8 64 aa5.05□□□□□ -1.6
HPS4-202ENST00000398145 ANK2Q01484 3957 aa5.04□□□□□ -1.6
HPS4-202ENST00000398145 DNAH10Q8IVF4 4471 aa5□□□□□ -1.61
HPS4-202ENST00000398145 DNAH9Q9NYC9 4486 aa4.99□□□□□ -1.61
HPS4-202ENST00000398145 PLECQ15149 4684 aaKnown RBP4.98□□□□□ -1.61
HPS4-202ENST00000398145 DNAH11Q96DT5 4516 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms