RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 KRTAP13-2Q52LG2 175 aa5.75□□□□□ -1.49
LIMCH1-203ENST00000396595 IGSF10Q6WRI0 2623 aa5.74□□□□□ -1.49
LIMCH1-203ENST00000396595 FREM2Q5SZK8 3169 aa5.73□□□□□ -1.49
LIMCH1-203ENST00000396595 BAHCC1Q9P281 2608 aa5.72□□□□□ -1.49
LIMCH1-203ENST00000396595 DSPP15924 2871 aaKnown RBP5.72□□□□□ -1.49
LIMCH1-203ENST00000396595 FRYQ5TBA9 3013 aa5.7□□□□□ -1.5
LIMCH1-203ENST00000396595 ITPR2Q14571 2701 aa5.7□□□□□ -1.5
LIMCH1-203ENST00000396595 TNP1P09430 55 aa5.7□□□□□ -1.5
LIMCH1-203ENST00000396595 CELSR3Q9NYQ7 3312 aa5.68□□□□□ -1.5
LIMCH1-203ENST00000396595 ASPMQ8IZT6 3477 aa5.68□□□□□ -1.5
LIMCH1-203ENST00000396595 P0C880 135 aa5.67□□□□□ -1.5
LIMCH1-203ENST00000396595 ITPR1Q14643 2758 aa5.65□□□□□ -1.5
LIMCH1-203ENST00000396595 KMT2BQ9UMN6 2715 aaPredicted RBP5.62□□□□□ -1.51
LIMCH1-203ENST00000396595 APCP25054 2843 aa5.61□□□□□ -1.51
LIMCH1-203ENST00000396595 KALRNO60229 2985 aa5.59□□□□□ -1.51
LIMCH1-203ENST00000396595 ZFHX4Q86UP3 3567 aa5.59□□□□□ -1.52
LIMCH1-203ENST00000396595 SPENQ96T58 3664 aaKnown RBP5.58□□□□□ -1.52
LIMCH1-203ENST00000396595 LAMA5O15230 3695 aa5.57□□□□□ -1.52
LIMCH1-203ENST00000396595 UTP20O75691 2785 aaKnown RBP5.56□□□□□ -1.52
LIMCH1-203ENST00000396595 TACC2O95359 2948 aa5.55□□□□□ -1.52
LIMCH1-203ENST00000396595 CFAP47Q6ZTR5 3102 aa5.54□□□□□ -1.52
LIMCH1-203ENST00000396595 FLNCQ14315 2725 aa5.54□□□□□ -1.52
LIMCH1-203ENST00000396595 NIPBLQ6KC79 2804 aaeCLIP5.54□□□□□ -1.52
LIMCH1-203ENST00000396595 DMXL1Q9Y485 3027 aa5.54□□□□□ -1.52
LIMCH1-203ENST00000396595 LOC400499M0QZD8 3231 aa5.53□□□□□ -1.52
LIMCH1-203ENST00000396595 HIVEP1P15822 2718 aa5.52□□□□□ -1.53
LIMCH1-203ENST00000396595 ASH1LQ9NR48 2969 aaKnown RBP5.51□□□□□ -1.53
LIMCH1-203ENST00000396595 DMXL2Q8TDJ6 3036 aa5.5□□□□□ -1.53
LIMCH1-203ENST00000396595 H0YAA0 97 aa5.5□□□□□ -1.53
LIMCH1-203ENST00000396595 KRTAP10-8P60410 259 aa5.5□□□□□ -1.53
LIMCH1-203ENST00000396595 NBEAQ8NFP9 2946 aa5.47□□□□□ -1.53
LIMCH1-203ENST00000396595 KRTAP1-4P0C5Y4 121 aa5.46□□□□□ -1.54
LIMCH1-203ENST00000396595 DCHS1Q96JQ0 3298 aa5.46□□□□□ -1.54
LIMCH1-203ENST00000396595 ATMQ13315 3056 aa5.45□□□□□ -1.54
LIMCH1-203ENST00000396595 BOD1L1Q8NFC6 3051 aa5.43□□□□□ -1.54
LIMCH1-203ENST00000396595 TENM4Q6N022 2769 aa5.42□□□□□ -1.54
LIMCH1-203ENST00000396595 COL12A1Q99715 3063 aa5.42□□□□□ -1.54
LIMCH1-203ENST00000396595 CELSR2Q9HCU4 2923 aa5.42□□□□□ -1.54
LIMCH1-203ENST00000396595 BSNQ9UPA5 3926 aa5.41□□□□□ -1.54
LIMCH1-203ENST00000396595 LRBAP50851 2863 aa5.41□□□□□ -1.54
LIMCH1-203ENST00000396595 ADGRG4Q8IZF6 3080 aa5.41□□□□□ -1.54
LIMCH1-203ENST00000396595 XP32Q5T750 250 aa5.41□□□□□ -1.54
LIMCH1-203ENST00000396595 SMG1Q96Q15 3661 aaKnown RBP5.36□□□□□ -1.55
LIMCH1-203ENST00000396595 KRTAP21-3Q3LHN1 58 aa5.36□□□□□ -1.55
LIMCH1-203ENST00000396595 DCHS2Q6V1P9 2916 aa5.33□□□□□ -1.56
LIMCH1-203ENST00000396595 ZZEF1O43149 2961 aa5.33□□□□□ -1.56
LIMCH1-203ENST00000396595 RELNP78509 3460 aa5.31□□□□□ -1.56
LIMCH1-203ENST00000396595 TPRXLQ17RH7 258 aa5.29□□□□□ -1.56
LIMCH1-203ENST00000396595 TENM3Q9P273 2699 aa5.29□□□□□ -1.56
LIMCH1-203ENST00000396595 ZANQ9Y493 2812 aa5.29□□□□□ -1.56
LIMCH1-203ENST00000396595 CRYBG3Q68DQ2 2970 aa5.26□□□□□ -1.57
LIMCH1-203ENST00000396595 KRTAP13-3Q3SY46 172 aa5.25□□□□□ -1.57
LIMCH1-203ENST00000396595 A0A1B0GVY2 172 aa5.22□□□□□ -1.57
LIMCH1-203ENST00000396595 TENM1Q9UKZ4 2725 aa5.21□□□□□ -1.58
LIMCH1-203ENST00000396595 TGP01266 2768 aa5.2□□□□□ -1.58
LIMCH1-203ENST00000396595 INE1O15225 51 aa5.19□□□□□ -1.58
LIMCH1-203ENST00000396595 NF1P21359 2839 aa5.18□□□□□ -1.58
LIMCH1-203ENST00000396595 HRNRQ86YZ3 2850 aaPredicted RBP5.15□□□□□ -1.58
LIMCH1-203ENST00000396595 FBN2P35556 2912 aa5.15□□□□□ -1.58
LIMCH1-203ENST00000396595 VPS13CQ709C8 3753 aa5.15□□□□□ -1.59
LIMCH1-203ENST00000396595 SVEP1Q4LDE5 3571 aa5.15□□□□□ -1.59
LIMCH1-203ENST00000396595 KRTAP10-10P60014 251 aa5.14□□□□□ -1.59
LIMCH1-203ENST00000396595 ZFHX3Q15911 3703 aa5.14□□□□□ -1.59
LIMCH1-203ENST00000396595 PRO2289Q9P1D8 64 aa5.13□□□□□ -1.59
LIMCH1-203ENST00000396595 CSMD1Q96PZ7 3565 aa5.13□□□□□ -1.59
LIMCH1-203ENST00000396595 KRTAP12-2P59991 146 aa5.11□□□□□ -1.59
LIMCH1-203ENST00000396595 TENM2Q9NT68 2774 aa5.07□□□□□ -1.6
LIMCH1-203ENST00000396595 CSMD2Q7Z408 3487 aa5.06□□□□□ -1.6
LIMCH1-203ENST00000396595 KRTAP13-4Q3LI77 160 aa5.05□□□□□ -1.6
LIMCH1-203ENST00000396595 CELSR1Q9NYQ6 3014 aa5.04□□□□□ -1.6
LIMCH1-203ENST00000396595 KRTAP15-1Q3LI76 137 aa5.02□□□□□ -1.61
LIMCH1-203ENST00000396595 KRTAP12-1P59990 96 aa5.02□□□□□ -1.61
LIMCH1-203ENST00000396595 PDZD2O15018 2839 aa5.01□□□□□ -1.61
LIMCH1-203ENST00000396595 NBPF19A0A087WUL8 3843 aa4.97□□□□□ -1.61
LIMCH1-203ENST00000396595 KRTAP3-1Q9BYR8 98 aa4.96□□□□□ -1.61
LIMCH1-203ENST00000396595 MXRA5Q9NR99 2828 aa4.96□□□□□ -1.62
LIMCH1-203ENST00000396595 PKD1L1Q8TDX9 2849 aa4.94□□□□□ -1.62
LIMCH1-203ENST00000396595 ZNF469Q96JG9 3925 aaPredicted RBP4.89□□□□□ -1.63
LIMCH1-203ENST00000396595 CUBNO60494 3623 aa4.88□□□□□ -1.63
LIMCH1-203ENST00000396595 KRTAP10-6P60371 365 aaPredicted RBP4.86□□□□□ -1.63
LIMCH1-203ENST00000396595 VWFP04275 2813 aa4.86□□□□□ -1.63
LIMCH1-203ENST00000396595 AKAP9Q99996 3911 aa4.79□□□□□ -1.64
LIMCH1-203ENST00000396595 KRTAP23-1A1A580 65 aa4.78□□□□□ -1.64
LIMCH1-203ENST00000396595 FBN3Q75N90 2809 aa4.72□□□□□ -1.65
LIMCH1-203ENST00000396595 SRRM2Q9UQ35 2752 aaKnown RBP4.69□□□□□ -1.66
LIMCH1-203ENST00000396595 KRTAP3-2Q9BYR7 98 aa4.68□□□□□ -1.66
LIMCH1-203ENST00000396595 MEGF8Q7Z7M0 2845 aa4.68□□□□□ -1.66
LIMCH1-203ENST00000396595 ANK3Q12955 4377 aaKnown RBP4.67□□□□□ -1.66
LIMCH1-203ENST00000396595 FBN1P35555 2871 aaKnown RBP4.66□□□□□ -1.66
LIMCH1-203ENST00000396595 KRTAP3-3Q9BYR6 98 aa4.64□□□□□ -1.67
LIMCH1-203ENST00000396595 MT1HL1P0DM35 61 aa4.6□□□□□ -1.67
LIMCH1-203ENST00000396595 COL7A1Q02388 2944 aa4.58□□□□□ -1.68
LIMCH1-203ENST00000396595 OTOGQ6ZRI0 2925 aa4.56□□□□□ -1.68
LIMCH1-203ENST00000396595 KRTAP10-12P60413 245 aa4.54□□□□□ -1.68
LIMCH1-203ENST00000396595 TRRAPQ9Y4A5 3859 aa4.5□□□□□ -1.69
LIMCH1-203ENST00000396595 KRTAP10-4P60372 401 aaPredicted RBP4.48□□□□□ -1.69
LIMCH1-203ENST00000396595 CRCT1Q9UGL9 99 aa4.48□□□□□ -1.69
LIMCH1-203ENST00000396595 KRTAP12-3P60328 96 aa4.45□□□□□ -1.7
LIMCH1-203ENST00000396595 CMYA5Q8N3K9 4069 aa4.44□□□□□ -1.7
LIMCH1-203ENST00000396595 ANK2Q01484 3957 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms