RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 DCAF8L2P0C7V8 631 aa17.26■□□□□ 0.35
LIMCH1-203ENST00000396595 PELP1Q8IZL8 1130 aaKnown RBP16.66■□□□□ 0.26
LIMCH1-203ENST00000396595 SUPT5HO00267 1087 aaKnown RBP16.65■□□□□ 0.26
LIMCH1-203ENST00000396595 MYT1Q01538 1121 aa16.56■□□□□ 0.24
LIMCH1-203ENST00000396595 NISCHQ9Y2I1 1504 aa16.46■□□□□ 0.23
LIMCH1-203ENST00000396595 SHROOM4Q9ULL8 1493 aa16.22■□□□□ 0.19
LIMCH1-203ENST00000396595 ERICH6Q7L0X2 663 aa16.06■□□□□ 0.16
LIMCH1-203ENST00000396595 EHMT2Q96KQ7 1210 aa16.03■□□□□ 0.16
LIMCH1-203ENST00000396595 APLP2Q06481 763 aa15.94■□□□□ 0.14
LIMCH1-203ENST00000396595 CCER1Q8TC90 406 aaPredicted RBP15.83■□□□□ 0.12
LIMCH1-203ENST00000396595 PCGF6Q9BYE7 350 aa15.81■□□□□ 0.12
LIMCH1-203ENST00000396595 CENPBP07199 599 aaPredicted RBP15.74■□□□□ 0.11
LIMCH1-203ENST00000396595 ZEB1P37275 1124 aaPredicted RBP15.73■□□□□ 0.11
LIMCH1-203ENST00000396595 FAM9AQ8IZU1 332 aaPredicted RBP15.7■□□□□ 0.1
LIMCH1-203ENST00000396595 TTBK1Q5TCY1 1321 aaPredicted RBP15.63■□□□□ 0.09
LIMCH1-203ENST00000396595 TRIM41Q8WV44 630 aa15.45■□□□□ 0.06
LIMCH1-203ENST00000396595 NEFLP07196 543 aa15.34■□□□□ 0.05
LIMCH1-203ENST00000396595 YTHDC1Q96MU7 727 aaKnown RBP15.32■□□□□ 0.04
LIMCH1-203ENST00000396595 RANGAP1P46060 587 aaPredicted RBP15.3■□□□□ 0.04
LIMCH1-203ENST00000396595 UBTFP17480 764 aaKnown RBP15.26■□□□□ 0.03
LIMCH1-203ENST00000396595 ATP1B4Q9UN42 357 aaPredicted RBP15.19■□□□□ 0.02
LIMCH1-203ENST00000396595 TRIM26Q12899 539 aaPredicted RBP15.16■□□□□ 0.02
LIMCH1-203ENST00000396595 HRCP23327 699 aa15.13■□□□□ 0.01
LIMCH1-203ENST00000396595 PPARGC1BQ86YN6 1023 aaKnown RBP14.99□□□□□ -0.01
LIMCH1-203ENST00000396595 DAXXQ9UER7 740 aaPredicted RBP14.95□□□□□ -0.02
LIMCH1-203ENST00000396595 RTL5Q5HYW3 569 aaPredicted RBP14.88□□□□□ -0.03
LIMCH1-203ENST00000396595 CHIC1Q5VXU3 224 aa14.84□□□□□ -0.03
LIMCH1-203ENST00000396595 LOC105371045A0A1W2PR82 267 aa14.8□□□□□ -0.04
LIMCH1-203ENST00000396595 ITGAEP38570 1179 aa14.77□□□□□ -0.05
LIMCH1-203ENST00000396595 HNRNPUL2Q1KMD3 747 aaKnown RBP14.75□□□□□ -0.05
LIMCH1-203ENST00000396595 POLR3GLQ9BT43 218 aa14.71□□□□□ -0.05
LIMCH1-203ENST00000396595 DIEXFQ68CQ4 756 aaKnown RBP14.69□□□□□ -0.06
LIMCH1-203ENST00000396595 GLIPR1L2Q4G1C9 344 aa14.63□□□□□ -0.07
LIMCH1-203ENST00000396595 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.62□□□□□ -0.07
LIMCH1-203ENST00000396595 ZNF316A6NFI3 1004 aaPredicted RBP14.59□□□□□ -0.07
LIMCH1-203ENST00000396595 MYT1LQ9UL68 1186 aa14.54□□□□□ -0.08
LIMCH1-203ENST00000396595 CNGB1Q14028 1251 aaPredicted RBP14.53□□□□□ -0.08
LIMCH1-203ENST00000396595 EIF5BO60841 1220 aaKnown RBP14.52□□□□□ -0.08
LIMCH1-203ENST00000396595 CLSPNQ9HAW4 1339 aa14.47□□□□□ -0.09
LIMCH1-203ENST00000396595 GTF3C3Q9Y5Q9 886 aa14.46□□□□□ -0.1
LIMCH1-203ENST00000396595 FAM50AQ14320 339 aaKnown RBP14.4□□□□□ -0.1
LIMCH1-203ENST00000396595 ANP32CO43423 234 aa14.36□□□□□ -0.11
LIMCH1-203ENST00000396595 SLC4A1APQ9BWU0 796 aaKnown RBP14.36□□□□□ -0.11
LIMCH1-203ENST00000396595 CDK11AQ9UQ88 783 aaPredicted RBP14.35□□□□□ -0.11
LIMCH1-203ENST00000396595 BCANQ96GW7 911 aa14.35□□□□□ -0.11
LIMCH1-203ENST00000396595 TRIM52Q96A61 297 aa14.33□□□□□ -0.12
LIMCH1-203ENST00000396595 NEUROD1Q13562 356 aa14.32□□□□□ -0.12
LIMCH1-203ENST00000396595 ACIN1Q9UKV3 1341 aaKnown RBP14.28□□□□□ -0.12
LIMCH1-203ENST00000396595 ZBTB47Q9UFB7 747 aaPredicted RBP14.16□□□□□ -0.14
LIMCH1-203ENST00000396595 ZNF326Q5BKZ1 582 aaKnown RBP14.16□□□□□ -0.14
LIMCH1-203ENST00000396595 ANP32AP39687 249 aaKnown RBP14.13□□□□□ -0.15
LIMCH1-203ENST00000396595 CANXP27824 592 aaKnown RBP14.08□□□□□ -0.16
LIMCH1-203ENST00000396595 CSRNP3Q8WYN3 585 aa14.07□□□□□ -0.16
LIMCH1-203ENST00000396595 PABPN1Q86U42 306 aaKnown RBP eCLIP14.02□□□□□ -0.17
LIMCH1-203ENST00000396595 ANP32BQ92688 251 aaKnown RBP14□□□□□ -0.17
LIMCH1-203ENST00000396595 DCAF1Q9Y4B6 1507 aa13.99□□□□□ -0.17
LIMCH1-203ENST00000396595 NEFMP07197 916 aa13.99□□□□□ -0.17
LIMCH1-203ENST00000396595 FKBP8Q14318 412 aa13.99□□□□□ -0.17
LIMCH1-203ENST00000396595 ABCC9O60706 1549 aa13.98□□□□□ -0.17
LIMCH1-203ENST00000396595 NPM2Q86SE8 214 aaKnown RBP13.95□□□□□ -0.18
LIMCH1-203ENST00000396595 TONSLQ96HA7 1378 aa13.93□□□□□ -0.18
LIMCH1-203ENST00000396595 TNNT2P45379 298 aaPredicted RBP13.91□□□□□ -0.18
LIMCH1-203ENST00000396595 P3H3Q8IVL6 736 aa13.91□□□□□ -0.18
LIMCH1-203ENST00000396595 HNRNPUQ00839 825 aaKnown RBP eCLIP13.91□□□□□ -0.18
LIMCH1-203ENST00000396595 BCL11AQ9H165 835 aa13.88□□□□□ -0.19
LIMCH1-203ENST00000396595 FBLN2P98095 1184 aa13.86□□□□□ -0.19
LIMCH1-203ENST00000396595 DDX10Q13206 875 aaKnown RBP13.86□□□□□ -0.19
LIMCH1-203ENST00000396595 UPF2Q9HAU5 1272 aaKnown RBP13.85□□□□□ -0.19
LIMCH1-203ENST00000396595 SLC24A1O60721 1099 aa13.84□□□□□ -0.19
LIMCH1-203ENST00000396595 HSP90AA1P07900 732 aaKnown RBP13.81□□□□□ -0.2
LIMCH1-203ENST00000396595 ZNF777Q9ULD5 760 aaPredicted RBP13.81□□□□□ -0.2
LIMCH1-203ENST00000396595 FAM9BQ8IZU0 186 aa13.81□□□□□ -0.2
LIMCH1-203ENST00000396595 ARID3CA6NKF2 412 aa13.81□□□□□ -0.2
LIMCH1-203ENST00000396595 CDK11BP21127 795 aaKnown RBP13.8□□□□□ -0.2
LIMCH1-203ENST00000396595 CCDC136Q96JN2 1154 aa13.8□□□□□ -0.2
LIMCH1-203ENST00000396595 NBR1Q14596 966 aa13.77□□□□□ -0.2
LIMCH1-203ENST00000396595 SCAF1Q9H7N4 1312 aaKnown RBP13.76□□□□□ -0.21
LIMCH1-203ENST00000396595 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.75□□□□□ -0.21
LIMCH1-203ENST00000396595 TMC1Q8TDI8 760 aa13.75□□□□□ -0.21
LIMCH1-203ENST00000396595 MIER1Q8N108 512 aa13.71□□□□□ -0.21
LIMCH1-203ENST00000396595 MRS2Q9HD23 443 aa13.71□□□□□ -0.21
LIMCH1-203ENST00000396595 SALL2Q9Y467 1007 aaPredicted RBP13.69□□□□□ -0.22
LIMCH1-203ENST00000396595 ANP32EQ9BTT0 268 aa13.67□□□□□ -0.22
LIMCH1-203ENST00000396595 TRIM44Q96DX7 344 aaPredicted RBP13.66□□□□□ -0.22
LIMCH1-203ENST00000396595 WDR43Q15061 677 aaKnown RBP eCLIP13.65□□□□□ -0.22
LIMCH1-203ENST00000396595 ZCCHC6Q5VYS8 1495 aaKnown RBP13.63□□□□□ -0.23
LIMCH1-203ENST00000396595 CHGAP10645 457 aaKnown RBP13.63□□□□□ -0.23
LIMCH1-203ENST00000396595 SCRIBQ14160 1630 aa13.62□□□□□ -0.23
LIMCH1-203ENST00000396595 CHIC2Q9UKJ5 165 aa13.61□□□□□ -0.23
LIMCH1-203ENST00000396595 ARXQ96QS3 562 aa13.61□□□□□ -0.23
LIMCH1-203ENST00000396595 EIF4G2P78344 907 aaKnown RBP eCLIP13.6□□□□□ -0.23
LIMCH1-203ENST00000396595 IRX6P78412 446 aaPredicted RBP13.59□□□□□ -0.23
LIMCH1-203ENST00000396595 DDRGK1Q96HY6 314 aa13.59□□□□□ -0.23
LIMCH1-203ENST00000396595 CLIP1P30622 1438 aa13.59□□□□□ -0.23
LIMCH1-203ENST00000396595 NCLP19338 710 aaKnown RBP13.59□□□□□ -0.23
LIMCH1-203ENST00000396595 ESF1Q9H501 851 aaKnown RBP13.58□□□□□ -0.24
LIMCH1-203ENST00000396595 MTUS2Q5JR59 1369 aa13.58□□□□□ -0.24
LIMCH1-203ENST00000396595 STAG3Q9UJ98 1225 aa13.58□□□□□ -0.24
LIMCH1-203ENST00000396595 NAP1L5Q96NT1 182 aaPredicted RBP13.57□□□□□ -0.24
LIMCH1-203ENST00000396595 TSPY4P0CV99 314 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 172 ms