RNA–Protein interactions for RNA: ENST00000392770.6

SCN3B-202, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 6,061 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-202ENST00000392770 CSAG1Q6PB30 78 aa9.54□□□□□ -0.88
SCN3B-202ENST00000392770 SEC61BP60468 96 aaKnown RBP9.53□□□□□ -0.88
SCN3B-202ENST00000392770 KRTAP13-2Q52LG2 175 aa9.53□□□□□ -0.88
SCN3B-202ENST00000392770 DMAC1Q96GE9 116 aa9.52□□□□□ -0.89
SCN3B-202ENST00000392770 OXTP01178 125 aa9.52□□□□□ -0.89
SCN3B-202ENST00000392770 LAMA5O15230 3695 aa9.51□□□□□ -0.89
SCN3B-202ENST00000392770 Q5VV11 94 aa9.51□□□□□ -0.89
SCN3B-202ENST00000392770 NSD1Q96L73 2696 aaPredicted RBP9.5□□□□□ -0.89
SCN3B-202ENST00000392770 RELNP78509 3460 aa9.5□□□□□ -0.89
SCN3B-202ENST00000392770 RPS29P62273 56 aaKnown RBP9.49□□□□□ -0.89
SCN3B-202ENST00000392770 NBEAL1Q6ZS30 2694 aa9.48□□□□□ -0.89
SCN3B-202ENST00000392770 ZANQ9Y493 2812 aa9.45□□□□□ -0.9
SCN3B-202ENST00000392770 MUC3AQ02505 3323 aa9.38□□□□□ -0.91
SCN3B-202ENST00000392770 CELSR2Q9HCU4 2923 aa9.37□□□□□ -0.91
SCN3B-202ENST00000392770 CRYBG3Q68DQ2 2970 aa9.36□□□□□ -0.91
SCN3B-202ENST00000392770 A0A0A0MQY5 61 aa9.35□□□□□ -0.91
SCN3B-202ENST00000392770 FBN2P35556 2912 aa9.34□□□□□ -0.91
SCN3B-202ENST00000392770 SMG1Q96Q15 3661 aaKnown RBP9.33□□□□□ -0.92
SCN3B-202ENST00000392770 DCHS1Q96JQ0 3298 aa9.32□□□□□ -0.92
SCN3B-202ENST00000392770 R4GN34 69 aa9.29□□□□□ -0.92
SCN3B-202ENST00000392770 H1FX-AS1Q4G0G2 97 aa9.29□□□□□ -0.92
SCN3B-202ENST00000392770 ASH1LQ9NR48 2969 aaKnown RBP9.28□□□□□ -0.92
SCN3B-202ENST00000392770 CSMD1Q96PZ7 3565 aa9.26□□□□□ -0.93
SCN3B-202ENST00000392770 NIPBLQ6KC79 2804 aaeCLIP9.25□□□□□ -0.93
SCN3B-202ENST00000392770 DCHS2Q6V1P9 2916 aa9.24□□□□□ -0.93
SCN3B-202ENST00000392770 TENM4Q6N022 2769 aa9.24□□□□□ -0.93
SCN3B-202ENST00000392770 ADM2Q7Z4H4 148 aa9.23□□□□□ -0.93
SCN3B-202ENST00000392770 RPL37P61927 97 aaKnown RBP9.19□□□□□ -0.94
SCN3B-202ENST00000392770 M0QZ58 72 aa9.18□□□□□ -0.94
SCN3B-202ENST00000392770 KRTAP1-4P0C5Y4 121 aa9.18□□□□□ -0.94
SCN3B-202ENST00000392770 SPATA8Q6RVD6 105 aa9.18□□□□□ -0.94
SCN3B-202ENST00000392770 NBPF19A0A087WUL8 3843 aa9.17□□□□□ -0.94
SCN3B-202ENST00000392770 FLG2Q5D862 2391 aaPredicted RBP9.16□□□□□ -0.94
SCN3B-202ENST00000392770 STAB2Q8WWQ8 2551 aa9.15□□□□□ -0.95
SCN3B-202ENST00000392770 PDZD2O15018 2839 aa9.15□□□□□ -0.95
SCN3B-202ENST00000392770 ANK3Q12955 4377 aaKnown RBP9.11□□□□□ -0.95
SCN3B-202ENST00000392770 BSNQ9UPA5 3926 aa9.09□□□□□ -0.95
SCN3B-202ENST00000392770 A8MUU9 505 aa9.08□□□□□ -0.96
SCN3B-202ENST00000392770 MXRA5Q9NR99 2828 aa9.08□□□□□ -0.96
SCN3B-202ENST00000392770 NF1P21359 2839 aa9.07□□□□□ -0.96
SCN3B-202ENST00000392770 C20orf166-AS1Q96NR2 134 aa9.07□□□□□ -0.96
SCN3B-202ENST00000392770 ROMO1P60602 79 aa9.06□□□□□ -0.96
SCN3B-202ENST00000392770 KRTAP16-1A8MUX0 517 aa9.04□□□□□ -0.96
SCN3B-202ENST00000392770 PLAC4Q8WY50 150 aa9.04□□□□□ -0.96
SCN3B-202ENST00000392770 SVEP1Q4LDE5 3571 aa9.03□□□□□ -0.96
SCN3B-202ENST00000392770 SPENQ96T58 3664 aaKnown RBP9.02□□□□□ -0.96
SCN3B-202ENST00000392770 CELSR1Q9NYQ6 3014 aa8.95□□□□□ -0.98
SCN3B-202ENST00000392770 A8MU10 97 aa8.94□□□□□ -0.98
SCN3B-202ENST00000392770 XP32Q5T750 250 aa8.92□□□□□ -0.98
SCN3B-202ENST00000392770 A0A1B0GVY2 172 aa8.89□□□□□ -0.99
SCN3B-202ENST00000392770 A6NN06 94 aa8.87□□□□□ -0.99
SCN3B-202ENST00000392770 DMBT1Q9UGM3 2413 aaPredicted RBP8.85□□□□□ -0.99
SCN3B-202ENST00000392770 OTOGQ6ZRI0 2925 aa8.84□□□□□ -0.99
SCN3B-202ENST00000392770 TENM3Q9P273 2699 aa8.81□□□□□ -1
SCN3B-202ENST00000392770 KRTAP25-1Q3LHN0 102 aa8.78□□□□□ -1
SCN3B-202ENST00000392770 NDUFAF8A1L188 74 aa8.75□□□□□ -1.01
SCN3B-202ENST00000392770 TPRXLQ17RH7 258 aa8.75□□□□□ -1.01
SCN3B-202ENST00000392770 TENM1Q9UKZ4 2725 aa8.72□□□□□ -1.01
SCN3B-202ENST00000392770 TENM2Q9NT68 2774 aa8.71□□□□□ -1.02
SCN3B-202ENST00000392770 CSMD2Q7Z408 3487 aa8.7□□□□□ -1.02
SCN3B-202ENST00000392770 KRTAP13-3Q3SY46 172 aa8.7□□□□□ -1.02
SCN3B-202ENST00000392770 KRTAP10-8P60410 259 aa8.64□□□□□ -1.03
SCN3B-202ENST00000392770 FBN1P35555 2871 aaKnown RBP8.62□□□□□ -1.03
SCN3B-202ENST00000392770 ZFHX3Q15911 3703 aa8.58□□□□□ -1.04
SCN3B-202ENST00000392770 VPS13CQ709C8 3753 aa8.53□□□□□ -1.04
SCN3B-202ENST00000392770 HUWE1Q7Z6Z7 4374 aaKnown RBP8.52□□□□□ -1.05
SCN3B-202ENST00000392770 CUBNO60494 3623 aa8.51□□□□□ -1.05
SCN3B-202ENST00000392770 TRRAPQ9Y4A5 3859 aa8.51□□□□□ -1.05
SCN3B-202ENST00000392770 VWFP04275 2813 aa8.5□□□□□ -1.05
SCN3B-202ENST00000392770 H0YAA0 97 aa8.49□□□□□ -1.05
SCN3B-202ENST00000392770 TNP1P09430 55 aa8.42□□□□□ -1.06
SCN3B-202ENST00000392770 P0C880 135 aa8.35□□□□□ -1.07
SCN3B-202ENST00000392770 AKAP9Q99996 3911 aa8.35□□□□□ -1.07
SCN3B-202ENST00000392770 C10orf95Q9H7T3 257 aa8.33□□□□□ -1.08
SCN3B-202ENST00000392770 TGP01266 2768 aa8.31□□□□□ -1.08
SCN3B-202ENST00000392770 KRTAP10-10P60014 251 aa8.28□□□□□ -1.08
SCN3B-202ENST00000392770 PKD1L1Q8TDX9 2849 aa8.27□□□□□ -1.09
SCN3B-202ENST00000392770 ZNF469Q96JG9 3925 aaPredicted RBP8.26□□□□□ -1.09
SCN3B-202ENST00000392770 ALMS1Q8TCU4 4167 aa8.25□□□□□ -1.09
SCN3B-202ENST00000392770 KRTAP3-1Q9BYR8 98 aa8.17□□□□□ -1.1
SCN3B-202ENST00000392770 PP632Q6XCG6 107 aa8.15□□□□□ -1.11
SCN3B-202ENST00000392770 DNAH9Q9NYC9 4486 aa8.12□□□□□ -1.11
SCN3B-202ENST00000392770 MT1HL1P0DM35 61 aa8.06□□□□□ -1.12
SCN3B-202ENST00000392770 KRTAP12-2P59991 146 aa8.05□□□□□ -1.12
SCN3B-202ENST00000392770 KRTAP10-4P60372 401 aaPredicted RBP8.04□□□□□ -1.12
SCN3B-202ENST00000392770 PRO2289Q9P1D8 64 aa7.99□□□□□ -1.13
SCN3B-202ENST00000392770 FBN3Q75N90 2809 aa7.97□□□□□ -1.13
SCN3B-202ENST00000392770 MEGF8Q7Z7M0 2845 aa7.97□□□□□ -1.13
SCN3B-202ENST00000392770 KRTAP4-5Q9BYR2 181 aa7.91□□□□□ -1.14
SCN3B-202ENST00000392770 KRTAP12-1P59990 96 aa7.89□□□□□ -1.15
SCN3B-202ENST00000392770 DNAH1Q9P2D7 4330 aa7.86□□□□□ -1.15
SCN3B-202ENST00000392770 KRTAP10-6P60371 365 aaPredicted RBP7.82□□□□□ -1.16
SCN3B-202ENST00000392770 KRTAP13-4Q3LI77 160 aa7.82□□□□□ -1.16
SCN3B-202ENST00000392770 PLECQ15149 4684 aaKnown RBP7.79□□□□□ -1.16
SCN3B-202ENST00000392770 CSMD3Q7Z407 3707 aa7.77□□□□□ -1.17
SCN3B-202ENST00000392770 SRRM2Q9UQ35 2752 aaKnown RBP7.72□□□□□ -1.17
SCN3B-202ENST00000392770 VPS13DQ5THJ4 4388 aa7.71□□□□□ -1.18
SCN3B-202ENST00000392770 KRTAP3-3Q9BYR6 98 aa7.71□□□□□ -1.18
SCN3B-202ENST00000392770 DNAH3Q8TD57 4116 aa7.68□□□□□ -1.18
SCN3B-202ENST00000392770 COL7A1Q02388 2944 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms