RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 H0YAA0 97 aa2.82□□□□□ -1.96
PCDH9-201ENST00000377861 KRTAP25-1Q3LHN0 102 aa2.81□□□□□ -1.96
PCDH9-201ENST00000377861 ADM2Q7Z4H4 148 aa2.81□□□□□ -1.96
PCDH9-201ENST00000377861 TENM1Q9UKZ4 2725 aa2.81□□□□□ -1.96
PCDH9-201ENST00000377861 KRTAP11-1Q8IUC1 163 aa2.81□□□□□ -1.96
PCDH9-201ENST00000377861 KRTAP16-1A8MUX0 517 aa2.8□□□□□ -1.96
PCDH9-201ENST00000377861 BRCA2P51587 3418 aa2.8□□□□□ -1.96
PCDH9-201ENST00000377861 HRNRQ86YZ3 2850 aaPredicted RBP2.79□□□□□ -1.96
PCDH9-201ENST00000377861 TENM2Q9NT68 2774 aa2.79□□□□□ -1.96
PCDH9-201ENST00000377861 C9orf92A6NGG3 77 aa2.79□□□□□ -1.96
PCDH9-201ENST00000377861 S4R3F8 94 aa2.78□□□□□ -1.96
PCDH9-201ENST00000377861 DMBT1Q9UGM3 2413 aaPredicted RBP2.78□□□□□ -1.96
PCDH9-201ENST00000377861 DMXL1Q9Y485 3027 aa2.78□□□□□ -1.96
PCDH9-201ENST00000377861 KRTAP1-5Q9BYS1 174 aa2.78□□□□□ -1.97
PCDH9-201ENST00000377861 CELSR1Q9NYQ6 3014 aa2.77□□□□□ -1.97
PCDH9-201ENST00000377861 OTOGQ6ZRI0 2925 aa2.77□□□□□ -1.97
PCDH9-201ENST00000377861 KRTAP13-3Q3SY46 172 aa2.76□□□□□ -1.97
PCDH9-201ENST00000377861 KRTAP23-1A1A580 65 aa2.76□□□□□ -1.97
PCDH9-201ENST00000377861 R4GN34 69 aa2.76□□□□□ -1.97
PCDH9-201ENST00000377861 SZT2Q5T011 3432 aa2.75□□□□□ -1.97
PCDH9-201ENST00000377861 CFAP47Q6ZTR5 3102 aa2.73□□□□□ -1.97
PCDH9-201ENST00000377861 PKD1L1Q8TDX9 2849 aa2.73□□□□□ -1.97
PCDH9-201ENST00000377861 SRRM2Q9UQ35 2752 aaKnown RBP2.72□□□□□ -1.97
PCDH9-201ENST00000377861 A0A0G2JQZ4 141 aa2.72□□□□□ -1.97
PCDH9-201ENST00000377861 CDH23Q9H251 3354 aa2.71□□□□□ -1.98
PCDH9-201ENST00000377861 TPRXLQ17RH7 258 aa2.71□□□□□ -1.98
PCDH9-201ENST00000377861 Q8N1X5 172 aa2.71□□□□□ -1.98
PCDH9-201ENST00000377861 PLAC4Q8WY50 150 aa2.71□□□□□ -1.98
PCDH9-201ENST00000377861 FLG2Q5D862 2391 aaPredicted RBP2.7□□□□□ -1.98
PCDH9-201ENST00000377861 KRTAP13-2Q52LG2 175 aa2.7□□□□□ -1.98
PCDH9-201ENST00000377861 KRTAP10-1P60331 282 aa2.69□□□□□ -1.98
PCDH9-201ENST00000377861 J3QL48 77 aa2.69□□□□□ -1.98
PCDH9-201ENST00000377861 EYSQ5T1H1 3165 aa2.69□□□□□ -1.98
PCDH9-201ENST00000377861 KRTAP1-4P0C5Y4 121 aa2.68□□□□□ -1.98
PCDH9-201ENST00000377861 COL6A3P12111 3177 aa2.68□□□□□ -1.98
PCDH9-201ENST00000377861 MEGF8Q7Z7M0 2845 aa2.68□□□□□ -1.98
PCDH9-201ENST00000377861 TNP1P09430 55 aa2.68□□□□□ -1.98
PCDH9-201ENST00000377861 KRTAP19-4Q3LI73 84 aa2.66□□□□□ -1.98
PCDH9-201ENST00000377861 USP34Q70CQ2 3546 aa2.65□□□□□ -1.98
PCDH9-201ENST00000377861 H3BS24 57 aa2.65□□□□□ -1.99
PCDH9-201ENST00000377861 LOC400499M0QZD8 3231 aa2.65□□□□□ -1.99
PCDH9-201ENST00000377861 KRTAP10-8P60410 259 aa2.64□□□□□ -1.99
PCDH9-201ENST00000377861 KRTAP10-2P60368 255 aa2.63□□□□□ -1.99
PCDH9-201ENST00000377861 DNAH14Q0VDD8 3507 aa2.63□□□□□ -1.99
PCDH9-201ENST00000377861 XP32Q5T750 250 aa2.62□□□□□ -1.99
PCDH9-201ENST00000377861 A0A0D9SG42 100 aa2.6□□□□□ -1.99
PCDH9-201ENST00000377861 CELSR3Q9NYQ7 3312 aa2.59□□□□□ -1.99
PCDH9-201ENST00000377861 P0C880 135 aa2.59□□□□□ -2
PCDH9-201ENST00000377861 SMR3BP02814 79 aaPredicted RBP2.58□□□□□ -2
PCDH9-201ENST00000377861 PRAC1Q96KF2 57 aa2.58□□□□□ -2
PCDH9-201ENST00000377861 Q5VSD8 79 aa2.57□□□□□ -2
PCDH9-201ENST00000377861 DCHS1Q96JQ0 3298 aa2.54□□□□□ -2
PCDH9-201ENST00000377861 PRO2289Q9P1D8 64 aa2.53□□□□□ -2.01
PCDH9-201ENST00000377861 KRTAP13-4Q3LI77 160 aa2.51□□□□□ -2.01
PCDH9-201ENST00000377861 INE1O15225 51 aa2.51□□□□□ -2.01
PCDH9-201ENST00000377861 C10orf95Q9H7T3 257 aa2.5□□□□□ -2.01
PCDH9-201ENST00000377861 MYO15AQ9UKN7 3530 aa2.49□□□□□ -2.01
PCDH9-201ENST00000377861 SPTBN5Q9NRC6 3674 aaKnown RBP2.48□□□□□ -2.01
PCDH9-201ENST00000377861 FBN3Q75N90 2809 aa2.48□□□□□ -2.01
PCDH9-201ENST00000377861 COL7A1Q02388 2944 aa2.47□□□□□ -2.01
PCDH9-201ENST00000377861 NDUFAF8A1L188 74 aa2.47□□□□□ -2.01
PCDH9-201ENST00000377861 A8MU10 97 aa2.46□□□□□ -2.02
PCDH9-201ENST00000377861 KRTAP3-1Q9BYR8 98 aa2.46□□□□□ -2.02
PCDH9-201ENST00000377861 A0A1B0GVY2 172 aa2.46□□□□□ -2.02
PCDH9-201ENST00000377861 KRTAP10-6P60371 365 aaPredicted RBP2.44□□□□□ -2.02
PCDH9-201ENST00000377861 LAMA5O15230 3695 aa2.44□□□□□ -2.02
PCDH9-201ENST00000377861 M0R2T5 61 aa2.43□□□□□ -2.02
PCDH9-201ENST00000377861 KRTAP12-1P59990 96 aa2.43□□□□□ -2.02
PCDH9-201ENST00000377861 MUC3AQ02505 3323 aa2.38□□□□□ -2.03
PCDH9-201ENST00000377861 SPEGQ15772 3267 aa2.37□□□□□ -2.03
PCDH9-201ENST00000377861 KRTAP3-2Q9BYR7 98 aa2.36□□□□□ -2.03
PCDH9-201ENST00000377861 RELNP78509 3460 aa2.36□□□□□ -2.03
PCDH9-201ENST00000377861 KRTAP15-1Q3LI76 137 aa2.34□□□□□ -2.03
PCDH9-201ENST00000377861 KRTAP3-3Q9BYR6 98 aa2.33□□□□□ -2.04
PCDH9-201ENST00000377861 KRTAP12-2P59991 146 aa2.33□□□□□ -2.04
PCDH9-201ENST00000377861 WDFY3Q8IZQ1 3526 aa2.31□□□□□ -2.04
PCDH9-201ENST00000377861 KRTAP10-4P60372 401 aaPredicted RBP2.31□□□□□ -2.04
PCDH9-201ENST00000377861 ZFHX4Q86UP3 3567 aa2.29□□□□□ -2.04
PCDH9-201ENST00000377861 SVEP1Q4LDE5 3571 aa2.29□□□□□ -2.04
PCDH9-201ENST00000377861 SMG1Q96Q15 3661 aaKnown RBP2.29□□□□□ -2.04
PCDH9-201ENST00000377861 CUBNO60494 3623 aa2.28□□□□□ -2.04
PCDH9-201ENST00000377861 ZFHX3Q15911 3703 aa2.28□□□□□ -2.04
PCDH9-201ENST00000377861 ASPMQ8IZT6 3477 aa2.27□□□□□ -2.05
PCDH9-201ENST00000377861 TRRAPQ9Y4A5 3859 aa2.26□□□□□ -2.05
PCDH9-201ENST00000377861 DMDP11532 3685 aa2.25□□□□□ -2.05
PCDH9-201ENST00000377861 MT1HL1P0DM35 61 aa2.24□□□□□ -2.05
PCDH9-201ENST00000377861 KRTAP10-10P60014 251 aa2.24□□□□□ -2.05
PCDH9-201ENST00000377861 SPRR2GQ9BYE4 73 aa2.2□□□□□ -2.06
PCDH9-201ENST00000377861 SPENQ96T58 3664 aaKnown RBP2.15□□□□□ -2.06
PCDH9-201ENST00000377861 NBPF19A0A087WUL8 3843 aa2.15□□□□□ -2.06
PCDH9-201ENST00000377861 CSMD2Q7Z408 3487 aa2.15□□□□□ -2.07
PCDH9-201ENST00000377861 KRTAP8-1Q8IUC2 63 aa2.14□□□□□ -2.07
PCDH9-201ENST00000377861 AKAP9Q99996 3911 aa2.14□□□□□ -2.07
PCDH9-201ENST00000377861 SPRR5A0A1B0GTR4 108 aa2.13□□□□□ -2.07
PCDH9-201ENST00000377861 KRTAP12-3P60328 96 aa2.11□□□□□ -2.07
PCDH9-201ENST00000377861 DNAH10Q8IVF4 4471 aa2.09□□□□□ -2.08
PCDH9-201ENST00000377861 CSMD1Q96PZ7 3565 aa2.08□□□□□ -2.08
PCDH9-201ENST00000377861 KRTAP10-12P60413 245 aa2.06□□□□□ -2.08
PCDH9-201ENST00000377861 VPS13CQ709C8 3753 aa2.05□□□□□ -2.08
PCDH9-201ENST00000377861 BSNQ9UPA5 3926 aa2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms