RNA–Protein interactions for RNA: ENST00000375290.6

PTCH1-204, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 10,631 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-204ENST00000375290 KRTAP13-3Q3SY46 172 aa5.47□□□□□ -1.53
PTCH1-204ENST00000375290 ADGRG4Q8IZF6 3080 aa5.45□□□□□ -1.54
PTCH1-204ENST00000375290 KRTAP21-3Q3LHN1 58 aa5.44□□□□□ -1.54
PTCH1-204ENST00000375290 TNRC18O15417 2968 aaPredicted RBP5.43□□□□□ -1.54
PTCH1-204ENST00000375290 HIVEP1P15822 2718 aa5.42□□□□□ -1.54
PTCH1-204ENST00000375290 KRTAP1-4P0C5Y4 121 aa5.42□□□□□ -1.54
PTCH1-204ENST00000375290 ASH1LQ9NR48 2969 aaKnown RBP5.41□□□□□ -1.54
PTCH1-204ENST00000375290 TPRXLQ17RH7 258 aa5.39□□□□□ -1.55
PTCH1-204ENST00000375290 ZZEF1O43149 2961 aa5.38□□□□□ -1.55
PTCH1-204ENST00000375290 VCANP13611 3396 aa5.37□□□□□ -1.55
PTCH1-204ENST00000375290 HRNRQ86YZ3 2850 aaPredicted RBP5.37□□□□□ -1.55
PTCH1-204ENST00000375290 XIRP2A4UGR9 3374 aa5.37□□□□□ -1.55
PTCH1-204ENST00000375290 C10orf95Q9H7T3 257 aa5.36□□□□□ -1.55
PTCH1-204ENST00000375290 ATMQ13315 3056 aa5.36□□□□□ -1.55
PTCH1-204ENST00000375290 LAMA1P25391 3075 aa5.36□□□□□ -1.55
PTCH1-204ENST00000375290 TGP01266 2768 aa5.34□□□□□ -1.55
PTCH1-204ENST00000375290 COL12A1Q99715 3063 aa5.34□□□□□ -1.55
PTCH1-204ENST00000375290 BRCA2P51587 3418 aa5.33□□□□□ -1.56
PTCH1-204ENST00000375290 XP32Q5T750 250 aa5.33□□□□□ -1.56
PTCH1-204ENST00000375290 ZANQ9Y493 2812 aa5.32□□□□□ -1.56
PTCH1-204ENST00000375290 CELSR2Q9HCU4 2923 aa5.31□□□□□ -1.56
PTCH1-204ENST00000375290 USP34Q70CQ2 3546 aa5.31□□□□□ -1.56
PTCH1-204ENST00000375290 CDH23Q9H251 3354 aa5.3□□□□□ -1.56
PTCH1-204ENST00000375290 UNC80Q8N2C7 3258 aa5.28□□□□□ -1.56
PTCH1-204ENST00000375290 BOD1L1Q8NFC6 3051 aa5.28□□□□□ -1.56
PTCH1-204ENST00000375290 DCHS2Q6V1P9 2916 aa5.27□□□□□ -1.57
PTCH1-204ENST00000375290 NF1P21359 2839 aa5.27□□□□□ -1.57
PTCH1-204ENST00000375290 DNAH14Q0VDD8 3507 aa5.26□□□□□ -1.57
PTCH1-204ENST00000375290 MXRA5Q9NR99 2828 aa5.25□□□□□ -1.57
PTCH1-204ENST00000375290 PRO2289Q9P1D8 64 aa5.24□□□□□ -1.57
PTCH1-204ENST00000375290 DMXL2Q8TDJ6 3036 aa5.24□□□□□ -1.57
PTCH1-204ENST00000375290 CELSR3Q9NYQ7 3312 aa5.21□□□□□ -1.58
PTCH1-204ENST00000375290 FREM2Q5SZK8 3169 aa5.21□□□□□ -1.58
PTCH1-204ENST00000375290 KRTAP13-4Q3LI77 160 aa5.2□□□□□ -1.58
PTCH1-204ENST00000375290 TENM3Q9P273 2699 aa5.18□□□□□ -1.58
PTCH1-204ENST00000375290 FBN2P35556 2912 aa5.15□□□□□ -1.59
PTCH1-204ENST00000375290 TENM1Q9UKZ4 2725 aa5.13□□□□□ -1.59
PTCH1-204ENST00000375290 INE1O15225 51 aa5.12□□□□□ -1.59
PTCH1-204ENST00000375290 TENM4Q6N022 2769 aa5.12□□□□□ -1.59
PTCH1-204ENST00000375290 CELSR1Q9NYQ6 3014 aa5.1□□□□□ -1.59
PTCH1-204ENST00000375290 COL6A3P12111 3177 aa5.1□□□□□ -1.59
PTCH1-204ENST00000375290 SZT2Q5T011 3432 aa5.1□□□□□ -1.59
PTCH1-204ENST00000375290 SPTBN5Q9NRC6 3674 aaKnown RBP5.09□□□□□ -1.6
PTCH1-204ENST00000375290 REV3LO60673 3130 aa5.08□□□□□ -1.6
PTCH1-204ENST00000375290 KRTAP10-8P60410 259 aa5.07□□□□□ -1.6
PTCH1-204ENST00000375290 PDZD2O15018 2839 aa5.07□□□□□ -1.6
PTCH1-204ENST00000375290 EYSQ5T1H1 3165 aa5.06□□□□□ -1.6
PTCH1-204ENST00000375290 KRTAP12-1P59990 96 aa5.06□□□□□ -1.6
PTCH1-204ENST00000375290 SRRM2Q9UQ35 2752 aaKnown RBP5.06□□□□□ -1.6
PTCH1-204ENST00000375290 KRTAP12-2P59991 146 aa5.05□□□□□ -1.6
PTCH1-204ENST00000375290 KRTAP23-1A1A580 65 aa5.04□□□□□ -1.6
PTCH1-204ENST00000375290 DMXL1Q9Y485 3027 aa5.04□□□□□ -1.6
PTCH1-204ENST00000375290 VWFP04275 2813 aa5□□□□□ -1.61
PTCH1-204ENST00000375290 CRYBG3Q68DQ2 2970 aa4.99□□□□□ -1.61
PTCH1-204ENST00000375290 TENM2Q9NT68 2774 aa4.98□□□□□ -1.61
PTCH1-204ENST00000375290 KRTAP15-1Q3LI76 137 aa4.97□□□□□ -1.61
PTCH1-204ENST00000375290 CFAP47Q6ZTR5 3102 aa4.93□□□□□ -1.62
PTCH1-204ENST00000375290 KRTAP3-1Q9BYR8 98 aa4.93□□□□□ -1.62
PTCH1-204ENST00000375290 KRTAP10-6P60371 365 aaPredicted RBP4.92□□□□□ -1.62
PTCH1-204ENST00000375290 LOC400499M0QZD8 3231 aa4.9□□□□□ -1.63
PTCH1-204ENST00000375290 A0A1B0GVY2 172 aa4.89□□□□□ -1.63
PTCH1-204ENST00000375290 PKD1L1Q8TDX9 2849 aa4.88□□□□□ -1.63
PTCH1-204ENST00000375290 KRTAP10-10P60014 251 aa4.83□□□□□ -1.64
PTCH1-204ENST00000375290 MEGF8Q7Z7M0 2845 aa4.79□□□□□ -1.64
PTCH1-204ENST00000375290 ZFHX3Q15911 3703 aa4.76□□□□□ -1.65
PTCH1-204ENST00000375290 WDFY3Q8IZQ1 3526 aa4.75□□□□□ -1.65
PTCH1-204ENST00000375290 MYO15AQ9UKN7 3530 aa4.72□□□□□ -1.65
PTCH1-204ENST00000375290 SPEGQ15772 3267 aa4.72□□□□□ -1.65
PTCH1-204ENST00000375290 KRTAP3-2Q9BYR7 98 aa4.71□□□□□ -1.66
PTCH1-204ENST00000375290 KRTAP3-3Q9BYR6 98 aa4.67□□□□□ -1.66
PTCH1-204ENST00000375290 FBN1P35555 2871 aaKnown RBP4.65□□□□□ -1.66
PTCH1-204ENST00000375290 ZFHX4Q86UP3 3567 aa4.64□□□□□ -1.67
PTCH1-204ENST00000375290 FBN3Q75N90 2809 aa4.62□□□□□ -1.67
PTCH1-204ENST00000375290 DCHS1Q96JQ0 3298 aa4.62□□□□□ -1.67
PTCH1-204ENST00000375290 OTOGQ6ZRI0 2925 aa4.61□□□□□ -1.67
PTCH1-204ENST00000375290 RELNP78509 3460 aa4.58□□□□□ -1.68
PTCH1-204ENST00000375290 COL7A1Q02388 2944 aa4.58□□□□□ -1.68
PTCH1-204ENST00000375290 ASPMQ8IZT6 3477 aa4.57□□□□□ -1.68
PTCH1-204ENST00000375290 LAMA5O15230 3695 aa4.56□□□□□ -1.68
PTCH1-204ENST00000375290 SPENQ96T58 3664 aaKnown RBP4.56□□□□□ -1.68
PTCH1-204ENST00000375290 NBPF19A0A087WUL8 3843 aa4.56□□□□□ -1.68
PTCH1-204ENST00000375290 SMG1Q96Q15 3661 aaKnown RBP4.54□□□□□ -1.68
PTCH1-204ENST00000375290 KRTAP10-12P60413 245 aa4.52□□□□□ -1.69
PTCH1-204ENST00000375290 KRTAP19-4Q3LI73 84 aa4.52□□□□□ -1.69
PTCH1-204ENST00000375290 CSMD1Q96PZ7 3565 aa4.5□□□□□ -1.69
PTCH1-204ENST00000375290 TRRAPQ9Y4A5 3859 aa4.47□□□□□ -1.69
PTCH1-204ENST00000375290 KRTAP12-3P60328 96 aa4.44□□□□□ -1.7
PTCH1-204ENST00000375290 DMDP11532 3685 aa4.43□□□□□ -1.7
PTCH1-204ENST00000375290 KRTAP10-4P60372 401 aaPredicted RBP4.43□□□□□ -1.7
PTCH1-204ENST00000375290 BSNQ9UPA5 3926 aa4.41□□□□□ -1.7
PTCH1-204ENST00000375290 MT1HL1P0DM35 61 aa4.4□□□□□ -1.7
PTCH1-204ENST00000375290 SVEP1Q4LDE5 3571 aa4.4□□□□□ -1.7
PTCH1-204ENST00000375290 ALMS1Q8TCU4 4167 aa4.4□□□□□ -1.71
PTCH1-204ENST00000375290 AKAP9Q99996 3911 aa4.37□□□□□ -1.71
PTCH1-204ENST00000375290 ANK3Q12955 4377 aaKnown RBP4.34□□□□□ -1.72
PTCH1-204ENST00000375290 VPS13CQ709C8 3753 aa4.33□□□□□ -1.72
PTCH1-204ENST00000375290 CUBNO60494 3623 aa4.33□□□□□ -1.72
PTCH1-204ENST00000375290 MUC3AQ02505 3323 aa4.32□□□□□ -1.72
PTCH1-204ENST00000375290 LCE3AQ5TA76 89 aa4.24□□□□□ -1.73
PTCH1-204ENST00000375290 HUWE1Q7Z6Z7 4374 aaKnown RBP4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 117.8 ms