RNA–Protein interactions for RNA: ENST00000373779.7

PTPRU-202, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-202ENST00000373779 ASPMQ8IZT6 3477 aa10.07□□□□□ -0.8
PTPRU-202ENST00000373779 HIVEP1P15822 2718 aa10.07□□□□□ -0.8
PTPRU-202ENST00000373779 NIPBLQ6KC79 2804 aaeCLIP10.06□□□□□ -0.8
PTPRU-202ENST00000373779 A6NN06 94 aa10.06□□□□□ -0.8
PTPRU-202ENST00000373779 A8MU10 97 aa10.04□□□□□ -0.8
PTPRU-202ENST00000373779 DCHS2Q6V1P9 2916 aa10.02□□□□□ -0.8
PTPRU-202ENST00000373779 SPATA8Q6RVD6 105 aa10.02□□□□□ -0.81
PTPRU-202ENST00000373779 LAMA5O15230 3695 aa10.01□□□□□ -0.81
PTPRU-202ENST00000373779 CRYBG3Q68DQ2 2970 aa10.01□□□□□ -0.81
PTPRU-202ENST00000373779 NF1P21359 2839 aa10.01□□□□□ -0.81
PTPRU-202ENST00000373779 SMG1Q96Q15 3661 aaKnown RBP9.97□□□□□ -0.81
PTPRU-202ENST00000373779 S4R3F8 94 aa9.97□□□□□ -0.81
PTPRU-202ENST00000373779 MXRA5Q9NR99 2828 aa9.97□□□□□ -0.81
PTPRU-202ENST00000373779 J3QL48 77 aa9.96□□□□□ -0.81
PTPRU-202ENST00000373779 H1FX-AS1Q4G0G2 97 aa9.96□□□□□ -0.82
PTPRU-202ENST00000373779 CSMD1Q96PZ7 3565 aa9.96□□□□□ -0.82
PTPRU-202ENST00000373779 COX6B2Q6YFQ2 88 aa9.95□□□□□ -0.82
PTPRU-202ENST00000373779 Q6ZSA8 131 aa9.94□□□□□ -0.82
PTPRU-202ENST00000373779 STAB2Q8WWQ8 2551 aa9.92□□□□□ -0.82
PTPRU-202ENST00000373779 KRTAP13-2Q52LG2 175 aa9.91□□□□□ -0.82
PTPRU-202ENST00000373779 RPL37P61927 97 aaKnown RBP9.85□□□□□ -0.83
PTPRU-202ENST00000373779 MUC3AQ02505 3323 aa9.84□□□□□ -0.83
PTPRU-202ENST00000373779 ROMO1P60602 79 aa9.82□□□□□ -0.84
PTPRU-202ENST00000373779 RPS29P62273 56 aaKnown RBP9.82□□□□□ -0.84
PTPRU-202ENST00000373779 H3BS24 57 aa9.82□□□□□ -0.84
PTPRU-202ENST00000373779 ADM2Q7Z4H4 148 aa9.76□□□□□ -0.85
PTPRU-202ENST00000373779 Q5VSD8 79 aa9.72□□□□□ -0.85
PTPRU-202ENST00000373779 DMBT1Q9UGM3 2413 aaPredicted RBP9.69□□□□□ -0.86
PTPRU-202ENST00000373779 CELSR1Q9NYQ6 3014 aa9.66□□□□□ -0.86
PTPRU-202ENST00000373779 CAMK2N1Q7Z7J9 78 aa9.65□□□□□ -0.86
PTPRU-202ENST00000373779 SVEP1Q4LDE5 3571 aa9.65□□□□□ -0.87
PTPRU-202ENST00000373779 KRTAP25-1Q3LHN0 102 aa9.64□□□□□ -0.87
PTPRU-202ENST00000373779 R4GN34 69 aa9.63□□□□□ -0.87
PTPRU-202ENST00000373779 LUZP6Q538Z0 58 aa9.61□□□□□ -0.87
PTPRU-202ENST00000373779 TENM3Q9P273 2699 aa9.58□□□□□ -0.88
PTPRU-202ENST00000373779 KRTAP1-4P0C5Y4 121 aa9.54□□□□□ -0.88
PTPRU-202ENST00000373779 A8MUU9 505 aa9.53□□□□□ -0.88
PTPRU-202ENST00000373779 M0QZ58 72 aa9.53□□□□□ -0.88
PTPRU-202ENST00000373779 C20orf166-AS1Q96NR2 134 aa9.51□□□□□ -0.89
PTPRU-202ENST00000373779 SEC61BP60468 96 aaKnown RBP9.5□□□□□ -0.89
PTPRU-202ENST00000373779 PDZD2O15018 2839 aa9.49□□□□□ -0.89
PTPRU-202ENST00000373779 SPENQ96T58 3664 aaKnown RBP9.48□□□□□ -0.89
PTPRU-202ENST00000373779 BSNQ9UPA5 3926 aa9.48□□□□□ -0.89
PTPRU-202ENST00000373779 KRTAP16-1A8MUX0 517 aa9.47□□□□□ -0.89
PTPRU-202ENST00000373779 TENM4Q6N022 2769 aa9.44□□□□□ -0.9
PTPRU-202ENST00000373779 TENM1Q9UKZ4 2725 aa9.41□□□□□ -0.9
PTPRU-202ENST00000373779 KRTAP13-3Q3SY46 172 aa9.4□□□□□ -0.9
PTPRU-202ENST00000373779 A0A0A0MQY5 61 aa9.35□□□□□ -0.91
PTPRU-202ENST00000373779 VWFP04275 2813 aa9.34□□□□□ -0.92
PTPRU-202ENST00000373779 H0YAA0 97 aa9.33□□□□□ -0.92
PTPRU-202ENST00000373779 NBPF19A0A087WUL8 3843 aa9.31□□□□□ -0.92
PTPRU-202ENST00000373779 ANK3Q12955 4377 aaKnown RBP9.3□□□□□ -0.92
PTPRU-202ENST00000373779 M0R2T5 61 aa9.27□□□□□ -0.93
PTPRU-202ENST00000373779 FLG2Q5D862 2391 aaPredicted RBP9.26□□□□□ -0.93
PTPRU-202ENST00000373779 CUBNO60494 3623 aa9.22□□□□□ -0.93
PTPRU-202ENST00000373779 TGP01266 2768 aa9.19□□□□□ -0.94
PTPRU-202ENST00000373779 OTOGQ6ZRI0 2925 aa9.17□□□□□ -0.94
PTPRU-202ENST00000373779 CSMD2Q7Z408 3487 aa9.15□□□□□ -0.94
PTPRU-202ENST00000373779 XP32Q5T750 250 aa9.14□□□□□ -0.95
PTPRU-202ENST00000373779 NDUFAF8A1L188 74 aa9.11□□□□□ -0.95
PTPRU-202ENST00000373779 KRTAP21-3Q3LHN1 58 aa9.08□□□□□ -0.96
PTPRU-202ENST00000373779 FBN1P35555 2871 aaKnown RBP9.07□□□□□ -0.96
PTPRU-202ENST00000373779 C10orf95Q9H7T3 257 aa9.05□□□□□ -0.96
PTPRU-202ENST00000373779 PKD1L1Q8TDX9 2849 aa9.05□□□□□ -0.96
PTPRU-202ENST00000373779 PLAC4Q8WY50 150 aa9□□□□□ -0.97
PTPRU-202ENST00000373779 TENM2Q9NT68 2774 aa8.98□□□□□ -0.97
PTPRU-202ENST00000373779 TRRAPQ9Y4A5 3859 aa8.97□□□□□ -0.97
PTPRU-202ENST00000373779 VPS13CQ709C8 3753 aa8.96□□□□□ -0.97
PTPRU-202ENST00000373779 P0C880 135 aa8.92□□□□□ -0.98
PTPRU-202ENST00000373779 ZFHX3Q15911 3703 aa8.85□□□□□ -0.99
PTPRU-202ENST00000373779 TPRXLQ17RH7 258 aa8.84□□□□□ -0.99
PTPRU-202ENST00000373779 A0A1B0GVY2 172 aa8.83□□□□□ -1
PTPRU-202ENST00000373779 KRTAP3-1Q9BYR8 98 aa8.82□□□□□ -1
PTPRU-202ENST00000373779 TNP1P09430 55 aa8.8□□□□□ -1
PTPRU-202ENST00000373779 KRTAP10-8P60410 259 aa8.78□□□□□ -1
PTPRU-202ENST00000373779 SRRM2Q9UQ35 2752 aaKnown RBP8.77□□□□□ -1.01
PTPRU-202ENST00000373779 PP632Q6XCG6 107 aa8.75□□□□□ -1.01
PTPRU-202ENST00000373779 FBN3Q75N90 2809 aa8.71□□□□□ -1.01
PTPRU-202ENST00000373779 HUWE1Q7Z6Z7 4374 aaKnown RBP8.71□□□□□ -1.02
PTPRU-202ENST00000373779 AKAP9Q99996 3911 aa8.7□□□□□ -1.02
PTPRU-202ENST00000373779 KRTAP12-2P59991 146 aa8.68□□□□□ -1.02
PTPRU-202ENST00000373779 ZNF469Q96JG9 3925 aaPredicted RBP8.63□□□□□ -1.03
PTPRU-202ENST00000373779 MEGF8Q7Z7M0 2845 aa8.62□□□□□ -1.03
PTPRU-202ENST00000373779 KRTAP12-1P59990 96 aa8.56□□□□□ -1.04
PTPRU-202ENST00000373779 KRTAP10-6P60371 365 aaPredicted RBP8.54□□□□□ -1.04
PTPRU-202ENST00000373779 KRTAP13-4Q3LI77 160 aa8.53□□□□□ -1.04
PTPRU-202ENST00000373779 KRTAP3-3Q9BYR6 98 aa8.32□□□□□ -1.08
PTPRU-202ENST00000373779 KRTAP3-2Q9BYR7 98 aa8.31□□□□□ -1.08
PTPRU-202ENST00000373779 CSMD3Q7Z407 3707 aa8.3□□□□□ -1.08
PTPRU-202ENST00000373779 DNAH9Q9NYC9 4486 aa8.29□□□□□ -1.08
PTPRU-202ENST00000373779 KRTAP10-4P60372 401 aaPredicted RBP8.26□□□□□ -1.09
PTPRU-202ENST00000373779 COL7A1Q02388 2944 aa8.25□□□□□ -1.09
PTPRU-202ENST00000373779 KRTAP10-10P60014 251 aa8.23□□□□□ -1.09
PTPRU-202ENST00000373779 DNAH1Q9P2D7 4330 aa8.18□□□□□ -1.1
PTPRU-202ENST00000373779 DNAH10Q8IVF4 4471 aa8.16□□□□□ -1.1
PTPRU-202ENST00000373779 MT1HL1P0DM35 61 aa8.15□□□□□ -1.1
PTPRU-202ENST00000373779 PLECQ15149 4684 aaKnown RBP8.14□□□□□ -1.11
PTPRU-202ENST00000373779 ALMS1Q8TCU4 4167 aa8.11□□□□□ -1.11
PTPRU-202ENST00000373779 KRTAP15-1Q3LI76 137 aa8.1□□□□□ -1.11
PTPRU-202ENST00000373779 DNAH17Q9UFH2 4485 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms