RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 KRTAP10-1P60331 282 aa12.26□□□□□ -0.45
CCDC88B-203ENST00000359902 Q6ZSA8 131 aa12.26□□□□□ -0.45
CCDC88B-203ENST00000359902 TP53AIP1Q9HCN2 124 aa12.25□□□□□ -0.45
CCDC88B-203ENST00000359902 SSBP3-AS1Q7Z2R9 100 aa12.23□□□□□ -0.45
CCDC88B-203ENST00000359902 A0A087X002 238 aa12.23□□□□□ -0.45
CCDC88B-203ENST00000359902 CD164Q04900 197 aa12.23□□□□□ -0.45
CCDC88B-203ENST00000359902 NOTCH2NLQ7Z3S9 236 aa12.23□□□□□ -0.45
CCDC88B-203ENST00000359902 PKD1P98161 4303 aa12.23□□□□□ -0.45
CCDC88B-203ENST00000359902 SPANXA2-OT1Q8N9U9 137 aa12.21□□□□□ -0.45
CCDC88B-203ENST00000359902 HYDINQ4G0P3 5121 aa12.2□□□□□ -0.46
CCDC88B-203ENST00000359902 MRPL34Q9BQ48 92 aaKnown RBP12.2□□□□□ -0.46
CCDC88B-203ENST00000359902 FAT2Q9NYQ8 4349 aa12.19□□□□□ -0.46
CCDC88B-203ENST00000359902 SPINK6Q6UWN8 80 aa12.19□□□□□ -0.46
CCDC88B-203ENST00000359902 NDUFS5O43920 106 aa12.17□□□□□ -0.46
CCDC88B-203ENST00000359902 PSPHP1O15172 72 aa12.16□□□□□ -0.46
CCDC88B-203ENST00000359902 LRP1BQ9NZR2 4599 aa12.16□□□□□ -0.46
CCDC88B-203ENST00000359902 KRTAP21-3Q3LHN1 58 aa12.15□□□□□ -0.46
CCDC88B-203ENST00000359902 SEC61GP60059 68 aa12.12□□□□□ -0.47
CCDC88B-203ENST00000359902 KRTAP13-2Q52LG2 175 aa12.12□□□□□ -0.47
CCDC88B-203ENST00000359902 PMAIP1Q13794 54 aa12.09□□□□□ -0.47
CCDC88B-203ENST00000359902 IGLV7-46A0A075B6I9 117 aa12.07□□□□□ -0.48
CCDC88B-203ENST00000359902 PCOTHQ58A44 107 aa12.06□□□□□ -0.48
CCDC88B-203ENST00000359902 A8MUN3 132 aa12.04□□□□□ -0.48
CCDC88B-203ENST00000359902 KRTAP1-4P0C5Y4 121 aa12.04□□□□□ -0.48
CCDC88B-203ENST00000359902 C8orf87E5RJ46 101 aa12.02□□□□□ -0.49
CCDC88B-203ENST00000359902 Q5W150 140 aa12□□□□□ -0.49
CCDC88B-203ENST00000359902 VPS13BQ7Z7G8 4022 aa11.99□□□□□ -0.49
CCDC88B-203ENST00000359902 KRTAP13-3Q3SY46 172 aa11.98□□□□□ -0.49
CCDC88B-203ENST00000359902 LIMD2Q9BT23 127 aa11.97□□□□□ -0.49
CCDC88B-203ENST00000359902 Q5VV11 94 aa11.97□□□□□ -0.49
CCDC88B-203ENST00000359902 LINC00313P59037 77 aa11.95□□□□□ -0.5
CCDC88B-203ENST00000359902 LOC101927531A0A1B0GV80 90 aa11.93□□□□□ -0.5
CCDC88B-203ENST00000359902 COA5Q86WW8 74 aa11.93□□□□□ -0.5
CCDC88B-203ENST00000359902 Q8N9P0 234 aaPredicted RBP11.93□□□□□ -0.5
CCDC88B-203ENST00000359902 PLA2G1BP04054 148 aaKnown RBP11.92□□□□□ -0.5
CCDC88B-203ENST00000359902 CHKB-CPT1BH3BT56 60 aa11.91□□□□□ -0.5
CCDC88B-203ENST00000359902 SACSQ9NZJ4 4579 aa11.88□□□□□ -0.51
CCDC88B-203ENST00000359902 PRR15LQ9BU68 103 aa11.87□□□□□ -0.51
CCDC88B-203ENST00000359902 PKHD1P08F94 4074 aa11.87□□□□□ -0.51
CCDC88B-203ENST00000359902 TYMSOSQ8TAI1 123 aa11.85□□□□□ -0.51
CCDC88B-203ENST00000359902 A8MU10 97 aa11.83□□□□□ -0.52
CCDC88B-203ENST00000359902 C4orf48Q5BLP8 95 aa11.83□□□□□ -0.52
CCDC88B-203ENST00000359902 KRTAP16-1A8MUX0 517 aa11.82□□□□□ -0.52
CCDC88B-203ENST00000359902 FAM229AH3BQW9 127 aa11.81□□□□□ -0.52
CCDC88B-203ENST00000359902 HRES1P13985 223 aa11.8□□□□□ -0.52
CCDC88B-203ENST00000359902 SPINK1P00995 79 aa11.8□□□□□ -0.52
CCDC88B-203ENST00000359902 Q75L30 129 aa11.79□□□□□ -0.52
CCDC88B-203ENST00000359902 RETNLBQ9BQ08 111 aa11.77□□□□□ -0.53
CCDC88B-203ENST00000359902 A6NED7 52 aa11.75□□□□□ -0.53
CCDC88B-203ENST00000359902 ATP11AUNQ6ZP68 121 aa11.74□□□□□ -0.53
CCDC88B-203ENST00000359902 PRR26Q8N8Z3 221 aa11.74□□□□□ -0.53
CCDC88B-203ENST00000359902 SPTSSBQ8NFR3 76 aa11.74□□□□□ -0.53
CCDC88B-203ENST00000359902 SMR3BP02814 79 aaPredicted RBP11.73□□□□□ -0.53
CCDC88B-203ENST00000359902 DYNC1H1Q14204 4646 aaKnown RBP11.73□□□□□ -0.53
CCDC88B-203ENST00000359902 A0A1B0GVY2 172 aa11.72□□□□□ -0.53
CCDC88B-203ENST00000359902 KTN1-AS1Q86SY8 53 aa11.72□□□□□ -0.53
CCDC88B-203ENST00000359902 IGKV2-30P06310 120 aa11.7□□□□□ -0.54
CCDC88B-203ENST00000359902 LCA10Q71F78 164 aa11.7□□□□□ -0.54
CCDC88B-203ENST00000359902 LINC00304Q8N9R0 145 aa11.69□□□□□ -0.54
CCDC88B-203ENST00000359902 SPAG11AQ6PDA7 123 aa11.66□□□□□ -0.54
CCDC88B-203ENST00000359902 RPS29P62273 56 aaKnown RBP11.65□□□□□ -0.54
CCDC88B-203ENST00000359902 CDC42SE1Q9NRR8 79 aa11.65□□□□□ -0.54
CCDC88B-203ENST00000359902 ACYP2P14621 99 aa11.64□□□□□ -0.55
CCDC88B-203ENST00000359902 LINC01558Q9Y6Z2 57 aa11.63□□□□□ -0.55
CCDC88B-203ENST00000359902 KRTAP10-4P60372 401 aaPredicted RBP11.62□□□□□ -0.55
CCDC88B-203ENST00000359902 DMAC1Q96GE9 116 aa11.62□□□□□ -0.55
CCDC88B-203ENST00000359902 APOBP04114 4563 aaKnown RBP11.59□□□□□ -0.55
CCDC88B-203ENST00000359902 A6NN06 94 aa11.58□□□□□ -0.56
CCDC88B-203ENST00000359902 FAT1Q14517 4588 aa11.57□□□□□ -0.56
CCDC88B-203ENST00000359902 IGKV2D-30A0A075B6S6 120 aa11.55□□□□□ -0.56
CCDC88B-203ENST00000359902 RBM12B-AS1Q9P1G2 102 aa11.53□□□□□ -0.56
CCDC88B-203ENST00000359902 RYR2Q92736 4967 aa11.51□□□□□ -0.57
CCDC88B-203ENST00000359902 PKHD1L1Q86WI1 4243 aa11.49□□□□□ -0.57
CCDC88B-203ENST00000359902 C7orf65Q6ZTY9 151 aa11.46□□□□□ -0.57
CCDC88B-203ENST00000359902 SPINK7P58062 85 aa11.44□□□□□ -0.58
CCDC88B-203ENST00000359902 KMT2CQ8NEZ4 4911 aaKnown RBP11.4□□□□□ -0.58
CCDC88B-203ENST00000359902 C9orf92A6NGG3 77 aa11.39□□□□□ -0.59
CCDC88B-203ENST00000359902 A8MUU9 505 aa11.36□□□□□ -0.59
CCDC88B-203ENST00000359902 C20orf166-AS1Q96NR2 134 aa11.36□□□□□ -0.59
CCDC88B-203ENST00000359902 Q8N1X5 172 aa11.27□□□□□ -0.61
CCDC88B-203ENST00000359902 A0A1B0GU69 56 aa11.24□□□□□ -0.61
CCDC88B-203ENST00000359902 FLG2Q5D862 2391 aaPredicted RBP11.23□□□□□ -0.61
CCDC88B-203ENST00000359902 KRTAP10-8P60410 259 aa11.17□□□□□ -0.62
CCDC88B-203ENST00000359902 Q5VSD8 79 aa11.15□□□□□ -0.62
CCDC88B-203ENST00000359902 TNXBP22105 4242 aa11.14□□□□□ -0.63
CCDC88B-203ENST00000359902 HSPG2P98160 4391 aa11.14□□□□□ -0.63
CCDC88B-203ENST00000359902 LRP1Q07954 4544 aaKnown RBP11.14□□□□□ -0.63
CCDC88B-203ENST00000359902 FAT3Q8TDW7 4589 aa11.1□□□□□ -0.63
CCDC88B-203ENST00000359902 KRTAP3-1Q9BYR8 98 aa11.1□□□□□ -0.63
CCDC88B-203ENST00000359902 SPATA8Q6RVD6 105 aa11.06□□□□□ -0.64
CCDC88B-203ENST00000359902 RYR3Q15413 4870 aa11.05□□□□□ -0.64
CCDC88B-203ENST00000359902 PRAC1Q96KF2 57 aa11.04□□□□□ -0.64
CCDC88B-203ENST00000359902 KRTAP17-1Q9BYP8 105 aa11.03□□□□□ -0.64
CCDC88B-203ENST00000359902 UQCR11O14957 56 aa11.01□□□□□ -0.65
CCDC88B-203ENST00000359902 RYR1P21817 5038 aa11□□□□□ -0.65
CCDC88B-203ENST00000359902 MIR22HGQ0VDD5 57 aa11□□□□□ -0.65
CCDC88B-203ENST00000359902 ADM2Q7Z4H4 148 aa10.97□□□□□ -0.65
CCDC88B-203ENST00000359902 COX6B2Q6YFQ2 88 aa10.93□□□□□ -0.66
CCDC88B-203ENST00000359902 DMBT1Q9UGM3 2413 aaPredicted RBP10.93□□□□□ -0.66
CCDC88B-203ENST00000359902 LINC01554Q52M75 96 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 169.6 ms