RNA–Protein interactions for RNA: ENST00000344626.8

SMARCA4-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best) BASIC

Gene SMARCA4, Length 5,392 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-201ENST00000344626 OCR1Q9BZK8 76 aa9.73□□□□□ -0.85
SMARCA4-201ENST00000344626 A0A087X002 238 aa9.71□□□□□ -0.86
SMARCA4-201ENST00000344626 H7BZZ5 65 aa9.7□□□□□ -0.86
SMARCA4-201ENST00000344626 LINC01554Q52M75 96 aa9.69□□□□□ -0.86
SMARCA4-201ENST00000344626 PRO0628Q9UI54 55 aa9.67□□□□□ -0.86
SMARCA4-201ENST00000344626 C4orf26Q17RF5 130 aa9.67□□□□□ -0.86
SMARCA4-201ENST00000344626 HRES1P13985 223 aa9.66□□□□□ -0.86
SMARCA4-201ENST00000344626 MIR22HGQ0VDD5 57 aa9.64□□□□□ -0.87
SMARCA4-201ENST00000344626 CSAG1Q6PB30 78 aa9.63□□□□□ -0.87
SMARCA4-201ENST00000344626 SPINK7P58062 85 aa9.63□□□□□ -0.87
SMARCA4-201ENST00000344626 RPS29P62273 56 aaKnown RBP9.61□□□□□ -0.87
SMARCA4-201ENST00000344626 Q5W150 140 aa9.59□□□□□ -0.87
SMARCA4-201ENST00000344626 S4R3F8 94 aa9.59□□□□□ -0.87
SMARCA4-201ENST00000344626 KRTAP11-1Q8IUC1 163 aa9.58□□□□□ -0.88
SMARCA4-201ENST00000344626 Q8N9P0 234 aaPredicted RBP9.54□□□□□ -0.88
SMARCA4-201ENST00000344626 SPINT4Q6UDR6 99 aa9.52□□□□□ -0.89
SMARCA4-201ENST00000344626 ASB16-AS1Q495Z4 193 aa9.51□□□□□ -0.89
SMARCA4-201ENST00000344626 A0A0D9SG42 100 aa9.5□□□□□ -0.89
SMARCA4-201ENST00000344626 KRTAP7-1Q8IUC3 87 aa9.49□□□□□ -0.89
SMARCA4-201ENST00000344626 CRIPTQ9P021 101 aa9.49□□□□□ -0.89
SMARCA4-201ENST00000344626 ZFHX4Q86UP3 3567 aa9.47□□□□□ -0.89
SMARCA4-201ENST00000344626 KRTAP13-1Q8IUC0 172 aa9.45□□□□□ -0.9
SMARCA4-201ENST00000344626 CSMD2Q7Z408 3487 aa9.43□□□□□ -0.9
SMARCA4-201ENST00000344626 A0A1B0GU33 70 aa9.41□□□□□ -0.9
SMARCA4-201ENST00000344626 CAMK2N1Q7Z7J9 78 aa9.41□□□□□ -0.9
SMARCA4-201ENST00000344626 CSMD1Q96PZ7 3565 aa9.41□□□□□ -0.9
SMARCA4-201ENST00000344626 Q5XG85 94 aa9.4□□□□□ -0.9
SMARCA4-201ENST00000344626 KRTAP13-2Q52LG2 175 aa9.39□□□□□ -0.91
SMARCA4-201ENST00000344626 CDC42SE1Q9NRR8 79 aa9.38□□□□□ -0.91
SMARCA4-201ENST00000344626 R4GN34 69 aa9.32□□□□□ -0.92
SMARCA4-201ENST00000344626 KRTAP29-1A8MX34 341 aaPredicted RBP9.3□□□□□ -0.92
SMARCA4-201ENST00000344626 Q75L30 129 aa9.3□□□□□ -0.92
SMARCA4-201ENST00000344626 FBN3Q75N90 2809 aa9.3□□□□□ -0.92
SMARCA4-201ENST00000344626 DMAC1Q96GE9 116 aa9.3□□□□□ -0.92
SMARCA4-201ENST00000344626 Q1T7F1 81 aa9.29□□□□□ -0.92
SMARCA4-201ENST00000344626 LINC01558Q9Y6Z2 57 aa9.25□□□□□ -0.93
SMARCA4-201ENST00000344626 RPL37P61927 97 aaKnown RBP9.23□□□□□ -0.93
SMARCA4-201ENST00000344626 NOTCH2NLQ7Z3S9 236 aa9.22□□□□□ -0.93
SMARCA4-201ENST00000344626 H1FX-AS1Q4G0G2 97 aa9.19□□□□□ -0.94
SMARCA4-201ENST00000344626 A0A1B0GVY2 172 aa9.14□□□□□ -0.95
SMARCA4-201ENST00000344626 M0QZ58 72 aa9.12□□□□□ -0.95
SMARCA4-201ENST00000344626 COL7A1Q02388 2944 aa9.11□□□□□ -0.95
SMARCA4-201ENST00000344626 LCA10Q71F78 164 aa9.1□□□□□ -0.95
SMARCA4-201ENST00000344626 KRTAP1-4P0C5Y4 121 aa9.09□□□□□ -0.95
SMARCA4-201ENST00000344626 ADM2Q7Z4H4 148 aa9.08□□□□□ -0.96
SMARCA4-201ENST00000344626 PLAC4Q8WY50 150 aa9.07□□□□□ -0.96
SMARCA4-201ENST00000344626 C20orf166-AS1Q96NR2 134 aa9.06□□□□□ -0.96
SMARCA4-201ENST00000344626 SPENQ96T58 3664 aaKnown RBP9.04□□□□□ -0.96
SMARCA4-201ENST00000344626 CUBNO60494 3623 aa9.04□□□□□ -0.96
SMARCA4-201ENST00000344626 A8MUU9 505 aa9.03□□□□□ -0.96
SMARCA4-201ENST00000344626 CYSTM1Q9H1C7 97 aa9.02□□□□□ -0.96
SMARCA4-201ENST00000344626 KTN1-AS1Q86SY8 53 aa9.01□□□□□ -0.97
SMARCA4-201ENST00000344626 TRRAPQ9Y4A5 3859 aa8.99□□□□□ -0.97
SMARCA4-201ENST00000344626 SVEP1Q4LDE5 3571 aa8.98□□□□□ -0.97
SMARCA4-201ENST00000344626 TPRXLQ17RH7 258 aa8.93□□□□□ -0.98
SMARCA4-201ENST00000344626 XP32Q5T750 250 aa8.92□□□□□ -0.98
SMARCA4-201ENST00000344626 Q5VV11 94 aa8.91□□□□□ -0.98
SMARCA4-201ENST00000344626 ANK3Q12955 4377 aaKnown RBP8.9□□□□□ -0.98
SMARCA4-201ENST00000344626 KRTAP10-8P60410 259 aa8.82□□□□□ -1
SMARCA4-201ENST00000344626 LUZP6Q538Z0 58 aa8.81□□□□□ -1
SMARCA4-201ENST00000344626 SPATA8Q6RVD6 105 aa8.79□□□□□ -1
SMARCA4-201ENST00000344626 MEGF8Q7Z7M0 2845 aa8.78□□□□□ -1
SMARCA4-201ENST00000344626 ROMO1P60602 79 aa8.77□□□□□ -1.01
SMARCA4-201ENST00000344626 KRTAP13-3Q3SY46 172 aa8.72□□□□□ -1.01
SMARCA4-201ENST00000344626 BSNQ9UPA5 3926 aa8.69□□□□□ -1.02
SMARCA4-201ENST00000344626 KRTAP10-10P60014 251 aa8.61□□□□□ -1.03
SMARCA4-201ENST00000344626 KRTAP16-1A8MUX0 517 aa8.6□□□□□ -1.03
SMARCA4-201ENST00000344626 DNHD1Q96M86 4753 aa8.55□□□□□ -1.04
SMARCA4-201ENST00000344626 PRAC1Q96KF2 57 aa8.55□□□□□ -1.04
SMARCA4-201ENST00000344626 KRTAP4-5Q9BYR2 181 aa8.51□□□□□ -1.05
SMARCA4-201ENST00000344626 A8MU10 97 aa8.5□□□□□ -1.05
SMARCA4-201ENST00000344626 H3BS24 57 aa8.46□□□□□ -1.05
SMARCA4-201ENST00000344626 TNP1P09430 55 aa8.42□□□□□ -1.06
SMARCA4-201ENST00000344626 A0A0A0MQY5 61 aa8.36□□□□□ -1.07
SMARCA4-201ENST00000344626 MT1HL1P0DM35 61 aa8.33□□□□□ -1.08
SMARCA4-201ENST00000344626 ZNF469Q96JG9 3925 aaPredicted RBP8.32□□□□□ -1.08
SMARCA4-201ENST00000344626 PRO2289Q9P1D8 64 aa8.26□□□□□ -1.09
SMARCA4-201ENST00000344626 VPS13CQ709C8 3753 aa8.21□□□□□ -1.1
SMARCA4-201ENST00000344626 HUWE1Q7Z6Z7 4374 aaKnown RBP8.17□□□□□ -1.1
SMARCA4-201ENST00000344626 KRTAP25-1Q3LHN0 102 aa8.16□□□□□ -1.1
SMARCA4-201ENST00000344626 AKAP9Q99996 3911 aa8.15□□□□□ -1.1
SMARCA4-201ENST00000344626 A6NN06 94 aa8.14□□□□□ -1.11
SMARCA4-201ENST00000344626 PP632Q6XCG6 107 aa8.11□□□□□ -1.11
SMARCA4-201ENST00000344626 KRTAP10-4P60372 401 aaPredicted RBP8.1□□□□□ -1.11
SMARCA4-201ENST00000344626 P0C880 135 aa8.09□□□□□ -1.11
SMARCA4-201ENST00000344626 H0YAA0 97 aa8.03□□□□□ -1.12
SMARCA4-201ENST00000344626 DNAH9Q9NYC9 4486 aa7.99□□□□□ -1.13
SMARCA4-201ENST00000344626 ALMS1Q8TCU4 4167 aa7.97□□□□□ -1.13
SMARCA4-201ENST00000344626 DNAH5Q8TE73 4624 aa7.91□□□□□ -1.14
SMARCA4-201ENST00000344626 CSMD3Q7Z407 3707 aa7.91□□□□□ -1.14
SMARCA4-201ENST00000344626 C10orf95Q9H7T3 257 aa7.83□□□□□ -1.16
SMARCA4-201ENST00000344626 KRTAP3-1Q9BYR8 98 aa7.83□□□□□ -1.16
SMARCA4-201ENST00000344626 PLECQ15149 4684 aaKnown RBP7.82□□□□□ -1.16
SMARCA4-201ENST00000344626 RYR1P21817 5038 aa7.74□□□□□ -1.17
SMARCA4-201ENST00000344626 NDUFAF8A1L188 74 aa7.71□□□□□ -1.17
SMARCA4-201ENST00000344626 DNAH11Q96DT5 4516 aa7.69□□□□□ -1.18
SMARCA4-201ENST00000344626 PRKDCP78527 4128 aaKnown RBP7.68□□□□□ -1.18
SMARCA4-201ENST00000344626 KIAA1109Q2LD37 5005 aa7.66□□□□□ -1.18
SMARCA4-201ENST00000344626 KRTAP12-2P59991 146 aa7.66□□□□□ -1.18
SMARCA4-201ENST00000344626 KRTAP13-4Q3LI77 160 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms