RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 ASPMQ8IZT6 3477 aa5.68□□□□□ -1.5
USP54-201ENST00000339859 H1FX-AS1Q4G0G2 97 aa5.67□□□□□ -1.5
USP54-201ENST00000339859 CAMK2N1Q7Z7J9 78 aa5.66□□□□□ -1.5
USP54-201ENST00000339859 WDFY3Q8IZQ1 3526 aa5.66□□□□□ -1.5
USP54-201ENST00000339859 NBEAL1Q6ZS30 2694 aa5.65□□□□□ -1.51
USP54-201ENST00000339859 A0A1B0GU33 70 aa5.64□□□□□ -1.51
USP54-201ENST00000339859 NOTCH2NLQ7Z3S9 236 aa5.64□□□□□ -1.51
USP54-201ENST00000339859 ZANQ9Y493 2812 aa5.64□□□□□ -1.51
USP54-201ENST00000339859 R4GN34 69 aa5.64□□□□□ -1.51
USP54-201ENST00000339859 RELNP78509 3460 aa5.63□□□□□ -1.51
USP54-201ENST00000339859 TPRXLQ17RH7 258 aa5.63□□□□□ -1.51
USP54-201ENST00000339859 CFAP47Q6ZTR5 3102 aa5.63□□□□□ -1.51
USP54-201ENST00000339859 BSNQ9UPA5 3926 aa5.63□□□□□ -1.51
USP54-201ENST00000339859 NIPBLQ6KC79 2804 aaeCLIP5.62□□□□□ -1.51
USP54-201ENST00000339859 OTOGQ6ZRI0 2925 aa5.61□□□□□ -1.51
USP54-201ENST00000339859 DMAC1Q96GE9 116 aa5.61□□□□□ -1.51
USP54-201ENST00000339859 CRIPTQ9P021 101 aa5.61□□□□□ -1.51
USP54-201ENST00000339859 LAMA5O15230 3695 aa5.6□□□□□ -1.51
USP54-201ENST00000339859 A8MUU9 505 aa5.6□□□□□ -1.51
USP54-201ENST00000339859 C20orf166-AS1Q96NR2 134 aa5.6□□□□□ -1.51
USP54-201ENST00000339859 MUC3AQ02505 3323 aa5.59□□□□□ -1.51
USP54-201ENST00000339859 CDC42SE1Q9NRR8 79 aa5.59□□□□□ -1.51
USP54-201ENST00000339859 LCA10Q71F78 164 aa5.58□□□□□ -1.52
USP54-201ENST00000339859 XP32Q5T750 250 aa5.58□□□□□ -1.52
USP54-201ENST00000339859 PLAC4Q8WY50 150 aa5.57□□□□□ -1.52
USP54-201ENST00000339859 ADM2Q7Z4H4 148 aa5.56□□□□□ -1.52
USP54-201ENST00000339859 MXRA5Q9NR99 2828 aa5.55□□□□□ -1.52
USP54-201ENST00000339859 M0QZ58 72 aa5.55□□□□□ -1.52
USP54-201ENST00000339859 PRO0628Q9UI54 55 aa5.55□□□□□ -1.52
USP54-201ENST00000339859 ZFHX4Q86UP3 3567 aa5.55□□□□□ -1.52
USP54-201ENST00000339859 KRTAP10-8P60410 259 aa5.54□□□□□ -1.52
USP54-201ENST00000339859 DCHS2Q6V1P9 2916 aa5.54□□□□□ -1.52
USP54-201ENST00000339859 Q1T7F1 81 aa5.53□□□□□ -1.52
USP54-201ENST00000339859 LINC01558Q9Y6Z2 57 aa5.53□□□□□ -1.52
USP54-201ENST00000339859 ALMS1Q8TCU4 4167 aa5.51□□□□□ -1.53
USP54-201ENST00000339859 NF1P21359 2839 aa5.49□□□□□ -1.53
USP54-201ENST00000339859 KRTAP13-3Q3SY46 172 aa5.48□□□□□ -1.53
USP54-201ENST00000339859 STAB2Q8WWQ8 2551 aa5.48□□□□□ -1.53
USP54-201ENST00000339859 TENM2Q9NT68 2774 aa5.43□□□□□ -1.54
USP54-201ENST00000339859 FBN1P35555 2871 aaKnown RBP5.42□□□□□ -1.54
USP54-201ENST00000339859 HUWE1Q7Z6Z7 4374 aaKnown RBP5.41□□□□□ -1.54
USP54-201ENST00000339859 SPENQ96T58 3664 aaKnown RBP5.4□□□□□ -1.54
USP54-201ENST00000339859 SMG1Q96Q15 3661 aaKnown RBP5.38□□□□□ -1.55
USP54-201ENST00000339859 CELSR1Q9NYQ6 3014 aa5.38□□□□□ -1.55
USP54-201ENST00000339859 AKAP9Q99996 3911 aa5.38□□□□□ -1.55
USP54-201ENST00000339859 CYSTM1Q9H1C7 97 aa5.36□□□□□ -1.55
USP54-201ENST00000339859 KRTAP16-1A8MUX0 517 aa5.35□□□□□ -1.55
USP54-201ENST00000339859 DMBT1Q9UGM3 2413 aaPredicted RBP5.35□□□□□ -1.55
USP54-201ENST00000339859 CSMD1Q96PZ7 3565 aa5.31□□□□□ -1.56
USP54-201ENST00000339859 Q5VV11 94 aa5.29□□□□□ -1.56
USP54-201ENST00000339859 ZFHX3Q15911 3703 aa5.29□□□□□ -1.56
USP54-201ENST00000339859 SPATA8Q6RVD6 105 aa5.29□□□□□ -1.56
USP54-201ENST00000339859 FLG2Q5D862 2391 aaPredicted RBP5.28□□□□□ -1.56
USP54-201ENST00000339859 TENM1Q9UKZ4 2725 aa5.28□□□□□ -1.56
USP54-201ENST00000339859 TENM3Q9P273 2699 aa5.27□□□□□ -1.57
USP54-201ENST00000339859 KRTAP10-10P60014 251 aa5.24□□□□□ -1.57
USP54-201ENST00000339859 ROMO1P60602 79 aa5.24□□□□□ -1.57
USP54-201ENST00000339859 KTN1-AS1Q86SY8 53 aa5.24□□□□□ -1.57
USP54-201ENST00000339859 VWFP04275 2813 aa5.23□□□□□ -1.57
USP54-201ENST00000339859 DNAH9Q9NYC9 4486 aa5.22□□□□□ -1.57
USP54-201ENST00000339859 CSMD2Q7Z408 3487 aa5.21□□□□□ -1.58
USP54-201ENST00000339859 MT1HL1P0DM35 61 aa5.19□□□□□ -1.58
USP54-201ENST00000339859 TRRAPQ9Y4A5 3859 aa5.17□□□□□ -1.58
USP54-201ENST00000339859 KRTAP4-5Q9BYR2 181 aa5.15□□□□□ -1.59
USP54-201ENST00000339859 KRTAP10-4P60372 401 aaPredicted RBP5.14□□□□□ -1.59
USP54-201ENST00000339859 SVEP1Q4LDE5 3571 aa5.13□□□□□ -1.59
USP54-201ENST00000339859 PKD1L1Q8TDX9 2849 aa5.13□□□□□ -1.59
USP54-201ENST00000339859 LUZP6Q538Z0 58 aa5.12□□□□□ -1.59
USP54-201ENST00000339859 FBN3Q75N90 2809 aa5.12□□□□□ -1.59
USP54-201ENST00000339859 PRO2289Q9P1D8 64 aa5.11□□□□□ -1.59
USP54-201ENST00000339859 A8MU10 97 aa5.1□□□□□ -1.59
USP54-201ENST00000339859 TNP1P09430 55 aa5.09□□□□□ -1.59
USP54-201ENST00000339859 ZNF469Q96JG9 3925 aaPredicted RBP5.07□□□□□ -1.6
USP54-201ENST00000339859 ANK2Q01484 3957 aa5.04□□□□□ -1.6
USP54-201ENST00000339859 DNAH1Q9P2D7 4330 aa5.03□□□□□ -1.6
USP54-201ENST00000339859 TGP01266 2768 aa4.99□□□□□ -1.61
USP54-201ENST00000339859 VPS13CQ709C8 3753 aa4.99□□□□□ -1.61
USP54-201ENST00000339859 PRAC1Q96KF2 57 aa4.98□□□□□ -1.61
USP54-201ENST00000339859 CUBNO60494 3623 aa4.95□□□□□ -1.62
USP54-201ENST00000339859 DNAH6Q9C0G6 4158 aa4.93□□□□□ -1.62
USP54-201ENST00000339859 H0YAA0 97 aa4.93□□□□□ -1.62
USP54-201ENST00000339859 VPS13DQ5THJ4 4388 aa4.93□□□□□ -1.62
USP54-201ENST00000339859 P0C880 135 aa4.92□□□□□ -1.62
USP54-201ENST00000339859 DNAH11Q96DT5 4516 aa4.91□□□□□ -1.62
USP54-201ENST00000339859 CMYA5Q8N3K9 4069 aa4.9□□□□□ -1.62
USP54-201ENST00000339859 DNAH10Q8IVF4 4471 aa4.9□□□□□ -1.63
USP54-201ENST00000339859 DNAH3Q8TD57 4116 aa4.88□□□□□ -1.63
USP54-201ENST00000339859 PP632Q6XCG6 107 aa4.87□□□□□ -1.63
USP54-201ENST00000339859 PLECQ15149 4684 aaKnown RBP4.87□□□□□ -1.63
USP54-201ENST00000339859 KRTAP25-1Q3LHN0 102 aa4.85□□□□□ -1.63
USP54-201ENST00000339859 DNAH17Q9UFH2 4485 aa4.84□□□□□ -1.63
USP54-201ENST00000339859 DYNC2H1Q8NCM8 4307 aaKnown RBP4.83□□□□□ -1.64
USP54-201ENST00000339859 MEGF8Q7Z7M0 2845 aa4.82□□□□□ -1.64
USP54-201ENST00000339859 KRTAP3-1Q9BYR8 98 aa4.82□□□□□ -1.64
USP54-201ENST00000339859 DNAH5Q8TE73 4624 aa4.8□□□□□ -1.64
USP54-201ENST00000339859 A6NN06 94 aa4.79□□□□□ -1.64
USP54-201ENST00000339859 DNHD1Q96M86 4753 aa4.77□□□□□ -1.65
USP54-201ENST00000339859 FAT2Q9NYQ8 4349 aa4.77□□□□□ -1.65
USP54-201ENST00000339859 DYNC1H1Q14204 4646 aaKnown RBP4.76□□□□□ -1.65
USP54-201ENST00000339859 PRKDCP78527 4128 aaKnown RBP4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 158.2 ms