RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 IGLV1-51P01701 117 aa1.23□□□□□ -2.21
HMGB1-201ENST00000326004 SAA1P0DJI8 122 aaPredicted RBP1.23□□□□□ -2.21
HMGB1-201ENST00000326004 ROMO1P60602 79 aa1.23□□□□□ -2.21
HMGB1-201ENST00000326004 HAMPP81172 84 aa1.23□□□□□ -2.21
HMGB1-201ENST00000326004 PRB3Q04118 309 aaPredicted RBP1.23□□□□□ -2.21
HMGB1-201ENST00000326004 KRTAP13-4Q3LI77 160 aa1.23□□□□□ -2.21
HMGB1-201ENST00000326004 C9orf116Q5BN46 136 aaPredicted RBP1.23□□□□□ -2.21
HMGB1-201ENST00000326004 ZNF833PQ6ZTB9 187 aa1.23□□□□□ -2.21
HMGB1-201ENST00000326004 SMIM2Q9BVW6 85 aa1.23□□□□□ -2.21
HMGB1-201ENST00000326004 UBL5Q9BZL1 73 aa1.23□□□□□ -2.21
HMGB1-201ENST00000326004 CYP4F30PQ9H0H9 118 aa1.23□□□□□ -2.21
HMGB1-201ENST00000326004 CDC42SE1Q9NRR8 79 aa1.23□□□□□ -2.21
HMGB1-201ENST00000326004 HUWE1Q7Z6Z7 4374 aaKnown RBP1.23□□□□□ -2.21
HMGB1-201ENST00000326004 FAT2Q9NYQ8 4349 aa1.23□□□□□ -2.21
HMGB1-201ENST00000326004 SPTBP11277 2137 aa1.22□□□□□ -2.21
HMGB1-201ENST00000326004 CRPP02741 224 aa1.22□□□□□ -2.21
HMGB1-201ENST00000326004 C1orf134Q5TEV5 83 aa1.22□□□□□ -2.21
HMGB1-201ENST00000326004 CASC2Q6XLA1 102 aa1.22□□□□□ -2.21
HMGB1-201ENST00000326004 Q6ZRN7 208 aaPredicted RBP1.22□□□□□ -2.21
HMGB1-201ENST00000326004 Q8N814 137 aa1.22□□□□□ -2.21
HMGB1-201ENST00000326004 LEAP2Q969E1 77 aa1.22□□□□□ -2.21
HMGB1-201ENST00000326004 LIMD2Q9BT23 127 aa1.22□□□□□ -2.21
HMGB1-201ENST00000326004 CDC42SE2Q9NRR3 84 aa1.22□□□□□ -2.21
HMGB1-201ENST00000326004 TRBV10-1A0A0K0K1A3 114 aa1.21□□□□□ -2.22
HMGB1-201ENST00000326004 CXorf51AA0A1B0GTR3 108 aa1.21□□□□□ -2.22
HMGB1-201ENST00000326004 MGPP08493 103 aa1.21□□□□□ -2.22
HMGB1-201ENST00000326004 COA5Q86WW8 74 aa1.21□□□□□ -2.22
HMGB1-201ENST00000326004 DEFB104AQ8WTQ1 72 aa1.21□□□□□ -2.22
HMGB1-201ENST00000326004 RPL39LQ96EH5 51 aaKnown RBP1.21□□□□□ -2.22
HMGB1-201ENST00000326004 ORMDL1Q9P0S3 153 aa1.21□□□□□ -2.22
HMGB1-201ENST00000326004 SNRNP200O75643 2136 aaKnown RBP1.21□□□□□ -2.22
HMGB1-201ENST00000326004 HEATR1Q9H583 2144 aaKnown RBP1.21□□□□□ -2.22
HMGB1-201ENST00000326004 DNAH3Q8TD57 4116 aa1.2□□□□□ -2.22
HMGB1-201ENST00000326004 IGKV2-40A0A087WW87 121 aaPredicted RBP1.2□□□□□ -2.22
HMGB1-201ENST00000326004 TRBV6-5A0A0K0K1A5 114 aa1.2□□□□□ -2.22
HMGB1-201ENST00000326004 LOC101927531A0A1B0GV80 90 aa1.2□□□□□ -2.22
HMGB1-201ENST00000326004 IGKV2-29A2NJV5 120 aaPredicted RBP1.2□□□□□ -2.22
HMGB1-201ENST00000326004 NUPR2A6NF83 97 aa1.2□□□□□ -2.22
HMGB1-201ENST00000326004 IGKV2D-40P01614 121 aaPredicted RBP1.2□□□□□ -2.22
HMGB1-201ENST00000326004 RPL39P62891 51 aaKnown RBP1.2□□□□□ -2.22
HMGB1-201ENST00000326004 PRCDQ00LT1 54 aa1.2□□□□□ -2.22
HMGB1-201ENST00000326004 PDE6HQ13956 83 aa1.2□□□□□ -2.22
HMGB1-201ENST00000326004 DEFB112Q30KQ8 113 aa1.2□□□□□ -2.22
HMGB1-201ENST00000326004 KRTAP21-2Q3LI59 83 aa1.2□□□□□ -2.22
HMGB1-201ENST00000326004 RPL39P5Q59GN2 51 aa1.2□□□□□ -2.22
HMGB1-201ENST00000326004 CSAG1Q6PB30 78 aa1.2□□□□□ -2.22
HMGB1-201ENST00000326004 Q8TAT8 98 aa1.2□□□□□ -2.22
HMGB1-201ENST00000326004 LINC00308Q8TCZ7 52 aa1.2□□□□□ -2.22
HMGB1-201ENST00000326004 CNFNQ9BYD5 112 aa1.2□□□□□ -2.22
HMGB1-201ENST00000326004 NDUFA4L2Q9NRX3 87 aa1.2□□□□□ -2.22
HMGB1-201ENST00000326004 MRPL36Q9P0J6 103 aaKnown RBP1.2□□□□□ -2.22
HMGB1-201ENST00000326004 NEBP20929 6669 aa1.19□□□□□ -2.22
HMGB1-201ENST00000326004 APOBP04114 4563 aaKnown RBP1.19□□□□□ -2.22
HMGB1-201ENST00000326004 SYNE2Q8WXH0 6885 aaKnown RBP1.19□□□□□ -2.22
HMGB1-201ENST00000326004 LYNX1G3V0Z9 82 aa1.19□□□□□ -2.22
HMGB1-201ENST00000326004 JMJD7-PLA2G4BH0Y9G9 81 aa1.19□□□□□ -2.22
HMGB1-201ENST00000326004 H0YGX0 51 aa1.19□□□□□ -2.22
HMGB1-201ENST00000326004 M0R2N4 97 aa1.19□□□□□ -2.22
HMGB1-201ENST00000326004 NDUFA1O15239 70 aa1.19□□□□□ -2.22
HMGB1-201ENST00000326004 LYNX1P0DP58 116 aa1.19□□□□□ -2.22
HMGB1-201ENST00000326004 SPINK7P58062 85 aa1.19□□□□□ -2.22
HMGB1-201ENST00000326004 FAT1Q14517 4588 aa1.19□□□□□ -2.22
HMGB1-201ENST00000326004 KRTAP20-1Q3LI63 56 aa1.19□□□□□ -2.22
HMGB1-201ENST00000326004 ASB16-AS1Q495Z4 193 aa1.19□□□□□ -2.22
HMGB1-201ENST00000326004 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.18□□□□□ -2.22
HMGB1-201ENST00000326004 A0A087WSZ3 146 aa1.18□□□□□ -2.22
HMGB1-201ENST00000326004 LOC110117498A0A087WWA1 95 aa1.18□□□□□ -2.22
HMGB1-201ENST00000326004 H0YGG7 62 aa1.18□□□□□ -2.22
HMGB1-201ENST00000326004 PPP1R17O96001 155 aa1.18□□□□□ -2.22
HMGB1-201ENST00000326004 SMR3BP02814 79 aaPredicted RBP1.18□□□□□ -2.22
HMGB1-201ENST00000326004 SAA2P0DJI9 122 aaPredicted RBP1.18□□□□□ -2.22
HMGB1-201ENST00000326004 ELOF1P60002 83 aaKnown RBP1.18□□□□□ -2.22
HMGB1-201ENST00000326004 C10orf55Q5SWW7 151 aa1.18□□□□□ -2.22
HMGB1-201ENST00000326004 SMIM11BQ8TCY0 68 aa1.18□□□□□ -2.22
HMGB1-201ENST00000326004 COX14Q96I36 57 aa1.18□□□□□ -2.22
HMGB1-201ENST00000326004 LINC00208Q96KT6 92 aa1.18□□□□□ -2.22
HMGB1-201ENST00000326004 LRP2P98164 4655 aa1.18□□□□□ -2.22
HMGB1-201ENST00000326004 GPR98Q8WXG9 6306 aa1.18□□□□□ -2.22
HMGB1-201ENST00000326004 DOCK11Q5JSL3 2073 aa1.17□□□□□ -2.22
HMGB1-201ENST00000326004 ARFGEF3Q5TH69 2177 aa1.17□□□□□ -2.22
HMGB1-201ENST00000326004 VPS13DQ5THJ4 4388 aa1.17□□□□□ -2.22
HMGB1-201ENST00000326004 NDUFA4O00483 81 aa1.17□□□□□ -2.22
HMGB1-201ENST00000326004 RNASE3P12724 160 aaKnown RBP1.17□□□□□ -2.22
HMGB1-201ENST00000326004 WT1-ASQ06250 92 aa1.17□□□□□ -2.22
HMGB1-201ENST00000326004 SPAG11BQ08648 103 aa1.17□□□□□ -2.22
HMGB1-201ENST00000326004 MIR22HGQ0VDD5 57 aa1.17□□□□□ -2.22
HMGB1-201ENST00000326004 C1orf137Q5JT78 98 aa1.17□□□□□ -2.22
HMGB1-201ENST00000326004 FAM74A4Q5TZK3 123 aa1.17□□□□□ -2.22
HMGB1-201ENST00000326004 SPAG11AQ6PDA7 123 aa1.17□□□□□ -2.22
HMGB1-201ENST00000326004 DEFB108BQ8NET1 73 aa1.17□□□□□ -2.22
HMGB1-201ENST00000326004 GAFA1Q96PS6 74 aa1.17□□□□□ -2.22
HMGB1-201ENST00000326004 WFDC10AQ9H1F0 79 aa1.17□□□□□ -2.22
HMGB1-201ENST00000326004 KLK9Q9UKQ9 250 aa1.17□□□□□ -2.22
HMGB1-201ENST00000326004 DNAH2Q9P225 4427 aa1.16□□□□□ -2.22
HMGB1-201ENST00000326004 TRGV2A0A075B6R0 118 aa1.16□□□□□ -2.22
HMGB1-201ENST00000326004 LINC00959A0A1B0GUT2 108 aa1.16□□□□□ -2.22
HMGB1-201ENST00000326004 NDUFB1O75438 58 aa1.16□□□□□ -2.22
HMGB1-201ENST00000326004 APELAP0DMC3 54 aa1.16□□□□□ -2.22
HMGB1-201ENST00000326004 PDE6GP18545 87 aa1.16□□□□□ -2.22
HMGB1-201ENST00000326004 POLR2KP53803 58 aaKnown RBP1.16□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 127.4 ms