RNA–Protein interactions for RNA: ENST00000324685.10

RNF40-201, Transcript of ring finger protein 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF40, Length 5,634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-201ENST00000324685 APCP25054 2843 aa10.59□□□□□ -0.71
RNF40-201ENST00000324685 ITPR1Q14643 2758 aa10.57□□□□□ -0.72
RNF40-201ENST00000324685 FRYQ5TBA9 3013 aa10.56□□□□□ -0.72
RNF40-201ENST00000324685 CDH23Q9H251 3354 aa10.49□□□□□ -0.73
RNF40-201ENST00000324685 VPS13AQ96RL7 3174 aa10.48□□□□□ -0.73
RNF40-201ENST00000324685 KRTAP12-2P59991 146 aa10.44□□□□□ -0.74
RNF40-201ENST00000324685 UTP20O75691 2785 aaKnown RBP10.44□□□□□ -0.74
RNF40-201ENST00000324685 CELSR3Q9NYQ7 3312 aa10.39□□□□□ -0.75
RNF40-201ENST00000324685 KRTAP13-4Q3LI77 160 aa10.38□□□□□ -0.75
RNF40-201ENST00000324685 KALRNO60229 2985 aa10.35□□□□□ -0.75
RNF40-201ENST00000324685 HIVEP1P15822 2718 aa10.35□□□□□ -0.75
RNF40-201ENST00000324685 FREM2Q5SZK8 3169 aa10.29□□□□□ -0.76
RNF40-201ENST00000324685 LAMA1P25391 3075 aa10.25□□□□□ -0.77
RNF40-201ENST00000324685 KRTAP12-1P59990 96 aa10.24□□□□□ -0.77
RNF40-201ENST00000324685 SZT2Q5T011 3432 aa10.23□□□□□ -0.77
RNF40-201ENST00000324685 NIPBLQ6KC79 2804 aaeCLIP10.22□□□□□ -0.77
RNF40-201ENST00000324685 LRBAP50851 2863 aa10.2□□□□□ -0.78
RNF40-201ENST00000324685 ATMQ13315 3056 aa10.19□□□□□ -0.78
RNF40-201ENST00000324685 TACC2O95359 2948 aa10.18□□□□□ -0.78
RNF40-201ENST00000324685 TENM4Q6N022 2769 aa10.17□□□□□ -0.78
RNF40-201ENST00000324685 VCANP13611 3396 aa10.17□□□□□ -0.78
RNF40-201ENST00000324685 DNAH14Q0VDD8 3507 aa10.17□□□□□ -0.78
RNF40-201ENST00000324685 FLNCQ14315 2725 aa10.12□□□□□ -0.79
RNF40-201ENST00000324685 ASH1LQ9NR48 2969 aaKnown RBP10.12□□□□□ -0.79
RNF40-201ENST00000324685 COL12A1Q99715 3063 aa10.11□□□□□ -0.79
RNF40-201ENST00000324685 COL6A3P12111 3177 aa10.07□□□□□ -0.8
RNF40-201ENST00000324685 DMXL2Q8TDJ6 3036 aa10.07□□□□□ -0.8
RNF40-201ENST00000324685 FRYLO94915 3013 aa10.07□□□□□ -0.8
RNF40-201ENST00000324685 BOD1L1Q8NFC6 3051 aa10.05□□□□□ -0.8
RNF40-201ENST00000324685 KRTAP3-1Q9BYR8 98 aa10.04□□□□□ -0.8
RNF40-201ENST00000324685 ADGRG4Q8IZF6 3080 aa10.03□□□□□ -0.8
RNF40-201ENST00000324685 CRYBG3Q68DQ2 2970 aa10□□□□□ -0.81
RNF40-201ENST00000324685 REV3LO60673 3130 aa9.99□□□□□ -0.81
RNF40-201ENST00000324685 KRTAP15-1Q3LI76 137 aa9.98□□□□□ -0.81
RNF40-201ENST00000324685 NBEAQ8NFP9 2946 aa9.98□□□□□ -0.81
RNF40-201ENST00000324685 CELSR2Q9HCU4 2923 aa9.94□□□□□ -0.82
RNF40-201ENST00000324685 TGP01266 2768 aa9.93□□□□□ -0.82
RNF40-201ENST00000324685 CFAP47Q6ZTR5 3102 aa9.89□□□□□ -0.83
RNF40-201ENST00000324685 DCHS2Q6V1P9 2916 aa9.85□□□□□ -0.83
RNF40-201ENST00000324685 EYSQ5T1H1 3165 aa9.85□□□□□ -0.83
RNF40-201ENST00000324685 KRTAP10-6P60371 365 aaPredicted RBP9.82□□□□□ -0.84
RNF40-201ENST00000324685 ZZEF1O43149 2961 aa9.81□□□□□ -0.84
RNF40-201ENST00000324685 SPTBN5Q9NRC6 3674 aaKnown RBP9.78□□□□□ -0.84
RNF40-201ENST00000324685 TENM1Q9UKZ4 2725 aa9.76□□□□□ -0.85
RNF40-201ENST00000324685 TENM2Q9NT68 2774 aa9.76□□□□□ -0.85
RNF40-201ENST00000324685 USP34Q70CQ2 3546 aa9.71□□□□□ -0.86
RNF40-201ENST00000324685 TENM3Q9P273 2699 aa9.68□□□□□ -0.86
RNF40-201ENST00000324685 HRNRQ86YZ3 2850 aaPredicted RBP9.68□□□□□ -0.86
RNF40-201ENST00000324685 INE1O15225 51 aa9.67□□□□□ -0.86
RNF40-201ENST00000324685 SPEGQ15772 3267 aa9.66□□□□□ -0.86
RNF40-201ENST00000324685 TNRC18O15417 2968 aaPredicted RBP9.64□□□□□ -0.87
RNF40-201ENST00000324685 ZANQ9Y493 2812 aa9.63□□□□□ -0.87
RNF40-201ENST00000324685 DMXL1Q9Y485 3027 aa9.58□□□□□ -0.88
RNF40-201ENST00000324685 NF1P21359 2839 aa9.55□□□□□ -0.88
RNF40-201ENST00000324685 CELSR1Q9NYQ6 3014 aa9.45□□□□□ -0.9
RNF40-201ENST00000324685 KRTAP10-12P60413 245 aa9.45□□□□□ -0.9
RNF40-201ENST00000324685 FBN2P35556 2912 aa9.43□□□□□ -0.9
RNF40-201ENST00000324685 KRTAP3-2Q9BYR7 98 aa9.43□□□□□ -0.9
RNF40-201ENST00000324685 LOC400499M0QZD8 3231 aa9.4□□□□□ -0.9
RNF40-201ENST00000324685 KRTAP3-3Q9BYR6 98 aa9.38□□□□□ -0.91
RNF40-201ENST00000324685 MT1HL1P0DM35 61 aa9.36□□□□□ -0.91
RNF40-201ENST00000324685 MYO15AQ9UKN7 3530 aa9.26□□□□□ -0.93
RNF40-201ENST00000324685 CRCT1Q9UGL9 99 aa9.25□□□□□ -0.93
RNF40-201ENST00000324685 PDZD2O15018 2839 aa9.25□□□□□ -0.93
RNF40-201ENST00000324685 KRTAP23-1A1A580 65 aa9.24□□□□□ -0.93
RNF40-201ENST00000324685 MXRA5Q9NR99 2828 aa9.21□□□□□ -0.93
RNF40-201ENST00000324685 KRTAP12-3P60328 96 aa9.19□□□□□ -0.94
RNF40-201ENST00000324685 WDFY3Q8IZQ1 3526 aa9.12□□□□□ -0.95
RNF40-201ENST00000324685 RELNP78509 3460 aa9.12□□□□□ -0.95
RNF40-201ENST00000324685 PKD1L1Q8TDX9 2849 aa9.07□□□□□ -0.96
RNF40-201ENST00000324685 LCE3AQ5TA76 89 aa9.05□□□□□ -0.96
RNF40-201ENST00000324685 KRTAP10-4P60372 401 aaPredicted RBP9.03□□□□□ -0.96
RNF40-201ENST00000324685 VWFP04275 2813 aa9.02□□□□□ -0.97
RNF40-201ENST00000324685 ASPMQ8IZT6 3477 aa8.99□□□□□ -0.97
RNF40-201ENST00000324685 DCHS1Q96JQ0 3298 aa8.97□□□□□ -0.97
RNF40-201ENST00000324685 NBPF19A0A087WUL8 3843 aa8.89□□□□□ -0.99
RNF40-201ENST00000324685 ZFHX4Q86UP3 3567 aa8.88□□□□□ -0.99
RNF40-201ENST00000324685 ANK3Q12955 4377 aaKnown RBP8.86□□□□□ -0.99
RNF40-201ENST00000324685 KRTAP4-5Q9BYR2 181 aa8.84□□□□□ -0.99
RNF40-201ENST00000324685 LAMA5O15230 3695 aa8.83□□□□□ -1
RNF40-201ENST00000324685 LORP23490 312 aaPredicted RBP8.78□□□□□ -1
RNF40-201ENST00000324685 MEGF8Q7Z7M0 2845 aa8.77□□□□□ -1.01
RNF40-201ENST00000324685 FBN3Q75N90 2809 aa8.77□□□□□ -1.01
RNF40-201ENST00000324685 CSMD1Q96PZ7 3565 aa8.71□□□□□ -1.01
RNF40-201ENST00000324685 KRTAP10-5P60370 271 aa8.68□□□□□ -1.02
RNF40-201ENST00000324685 ALMS1Q8TCU4 4167 aa8.67□□□□□ -1.02
RNF40-201ENST00000324685 FBN1P35555 2871 aaKnown RBP8.65□□□□□ -1.02
RNF40-201ENST00000324685 KRTAP8-1Q8IUC2 63 aa8.65□□□□□ -1.03
RNF40-201ENST00000324685 OTOGQ6ZRI0 2925 aa8.63□□□□□ -1.03
RNF40-201ENST00000324685 HUWE1Q7Z6Z7 4374 aaKnown RBP8.6□□□□□ -1.03
RNF40-201ENST00000324685 ZFHX3Q15911 3703 aa8.58□□□□□ -1.04
RNF40-201ENST00000324685 DMDP11532 3685 aa8.58□□□□□ -1.04
RNF40-201ENST00000324685 SMG1Q96Q15 3661 aaKnown RBP8.56□□□□□ -1.04
RNF40-201ENST00000324685 SRRM2Q9UQ35 2752 aaKnown RBP8.42□□□□□ -1.06
RNF40-201ENST00000324685 SVEP1Q4LDE5 3571 aa8.4□□□□□ -1.06
RNF40-201ENST00000324685 COL7A1Q02388 2944 aa8.4□□□□□ -1.07
RNF40-201ENST00000324685 CSMD2Q7Z408 3487 aa8.36□□□□□ -1.07
RNF40-201ENST00000324685 MUC3AQ02505 3323 aa8.3□□□□□ -1.08
RNF40-201ENST00000324685 TRRAPQ9Y4A5 3859 aa8.3□□□□□ -1.08
RNF40-201ENST00000324685 CUBNO60494 3623 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms