RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 FRYLO94915 3013 aa9.64□□□□□ -0.87
SYNPO-201ENST00000307662 LRBAP50851 2863 aa9.64□□□□□ -0.87
SYNPO-201ENST00000307662 DNAH14Q0VDD8 3507 aa9.62□□□□□ -0.87
SYNPO-201ENST00000307662 BOD1L1Q8NFC6 3051 aa9.61□□□□□ -0.87
SYNPO-201ENST00000307662 UTP20O75691 2785 aaKnown RBP9.61□□□□□ -0.87
SYNPO-201ENST00000307662 C20orf166-AS1Q96NR2 134 aa9.6□□□□□ -0.87
SYNPO-201ENST00000307662 KMT2BQ9UMN6 2715 aaPredicted RBP9.59□□□□□ -0.87
SYNPO-201ENST00000307662 DMXL2Q8TDJ6 3036 aa9.57□□□□□ -0.88
SYNPO-201ENST00000307662 HIVEP1P15822 2718 aa9.53□□□□□ -0.88
SYNPO-201ENST00000307662 COL6A3P12111 3177 aa9.5□□□□□ -0.89
SYNPO-201ENST00000307662 APCP25054 2843 aa9.5□□□□□ -0.89
SYNPO-201ENST00000307662 NIPBLQ6KC79 2804 aaeCLIP9.49□□□□□ -0.89
SYNPO-201ENST00000307662 ASH1LQ9NR48 2969 aaKnown RBP9.48□□□□□ -0.89
SYNPO-201ENST00000307662 ZZEF1O43149 2961 aa9.45□□□□□ -0.9
SYNPO-201ENST00000307662 TNP1P09430 55 aa9.39□□□□□ -0.91
SYNPO-201ENST00000307662 EYSQ5T1H1 3165 aa9.38□□□□□ -0.91
SYNPO-201ENST00000307662 C10orf95Q9H7T3 257 aa9.37□□□□□ -0.91
SYNPO-201ENST00000307662 CELSR2Q9HCU4 2923 aa9.37□□□□□ -0.91
SYNPO-201ENST00000307662 H0YAA0 97 aa9.37□□□□□ -0.91
SYNPO-201ENST00000307662 ZANQ9Y493 2812 aa9.36□□□□□ -0.91
SYNPO-201ENST00000307662 REV3LO60673 3130 aa9.3□□□□□ -0.92
SYNPO-201ENST00000307662 TENM4Q6N022 2769 aa9.29□□□□□ -0.92
SYNPO-201ENST00000307662 PP632Q6XCG6 107 aa9.29□□□□□ -0.92
SYNPO-201ENST00000307662 HRNRQ86YZ3 2850 aaPredicted RBP9.28□□□□□ -0.92
SYNPO-201ENST00000307662 CFAP47Q6ZTR5 3102 aa9.27□□□□□ -0.93
SYNPO-201ENST00000307662 TNRC18O15417 2968 aaPredicted RBP9.27□□□□□ -0.93
SYNPO-201ENST00000307662 DCHS2Q6V1P9 2916 aa9.27□□□□□ -0.93
SYNPO-201ENST00000307662 KRTAP21-3Q3LHN1 58 aa9.26□□□□□ -0.93
SYNPO-201ENST00000307662 SPTBN5Q9NRC6 3674 aaKnown RBP9.25□□□□□ -0.93
SYNPO-201ENST00000307662 P0C880 135 aa9.22□□□□□ -0.93
SYNPO-201ENST00000307662 DMXL1Q9Y485 3027 aa9.19□□□□□ -0.94
SYNPO-201ENST00000307662 KRTAP1-4P0C5Y4 121 aa9.19□□□□□ -0.94
SYNPO-201ENST00000307662 USP34Q70CQ2 3546 aa9.17□□□□□ -0.94
SYNPO-201ENST00000307662 CRYBG3Q68DQ2 2970 aa9.17□□□□□ -0.94
SYNPO-201ENST00000307662 SPEGQ15772 3267 aa9.13□□□□□ -0.95
SYNPO-201ENST00000307662 FBN2P35556 2912 aa9.1□□□□□ -0.95
SYNPO-201ENST00000307662 XP32Q5T750 250 aa9.09□□□□□ -0.95
SYNPO-201ENST00000307662 NF1P21359 2839 aa9.07□□□□□ -0.96
SYNPO-201ENST00000307662 LOC400499M0QZD8 3231 aa9.06□□□□□ -0.96
SYNPO-201ENST00000307662 KRTAP10-8P60410 259 aa9.03□□□□□ -0.96
SYNPO-201ENST00000307662 KRTAP13-3Q3SY46 172 aa8.97□□□□□ -0.97
SYNPO-201ENST00000307662 MXRA5Q9NR99 2828 aa8.89□□□□□ -0.99
SYNPO-201ENST00000307662 A0A1B0GVY2 172 aa8.82□□□□□ -1
SYNPO-201ENST00000307662 TENM3Q9P273 2699 aa8.82□□□□□ -1
SYNPO-201ENST00000307662 TPRXLQ17RH7 258 aa8.81□□□□□ -1
SYNPO-201ENST00000307662 TENM1Q9UKZ4 2725 aa8.8□□□□□ -1
SYNPO-201ENST00000307662 CELSR1Q9NYQ6 3014 aa8.8□□□□□ -1
SYNPO-201ENST00000307662 MYO15AQ9UKN7 3530 aa8.74□□□□□ -1.01
SYNPO-201ENST00000307662 KRTAP12-2P59991 146 aa8.73□□□□□ -1.01
SYNPO-201ENST00000307662 TENM2Q9NT68 2774 aa8.71□□□□□ -1.02
SYNPO-201ENST00000307662 TGP01266 2768 aa8.66□□□□□ -1.02
SYNPO-201ENST00000307662 RELNP78509 3460 aa8.65□□□□□ -1.03
SYNPO-201ENST00000307662 KRTAP10-10P60014 251 aa8.58□□□□□ -1.04
SYNPO-201ENST00000307662 PDZD2O15018 2839 aa8.58□□□□□ -1.04
SYNPO-201ENST00000307662 WDFY3Q8IZQ1 3526 aa8.58□□□□□ -1.04
SYNPO-201ENST00000307662 KRTAP12-1P59990 96 aa8.56□□□□□ -1.04
SYNPO-201ENST00000307662 DCHS1Q96JQ0 3298 aa8.56□□□□□ -1.04
SYNPO-201ENST00000307662 KRTAP13-4Q3LI77 160 aa8.55□□□□□ -1.04
SYNPO-201ENST00000307662 PRO2289Q9P1D8 64 aa8.55□□□□□ -1.04
SYNPO-201ENST00000307662 PKD1L1Q8TDX9 2849 aa8.49□□□□□ -1.05
SYNPO-201ENST00000307662 KRTAP3-1Q9BYR8 98 aa8.48□□□□□ -1.05
SYNPO-201ENST00000307662 LAMA5O15230 3695 aa8.38□□□□□ -1.07
SYNPO-201ENST00000307662 ZFHX4Q86UP3 3567 aa8.37□□□□□ -1.07
SYNPO-201ENST00000307662 VWFP04275 2813 aa8.35□□□□□ -1.07
SYNPO-201ENST00000307662 ASPMQ8IZT6 3477 aa8.35□□□□□ -1.07
SYNPO-201ENST00000307662 OTOGQ6ZRI0 2925 aa8.33□□□□□ -1.08
SYNPO-201ENST00000307662 FBN1P35555 2871 aaKnown RBP8.31□□□□□ -1.08
SYNPO-201ENST00000307662 KRTAP10-6P60371 365 aaPredicted RBP8.3□□□□□ -1.08
SYNPO-201ENST00000307662 CSMD1Q96PZ7 3565 aa8.23□□□□□ -1.09
SYNPO-201ENST00000307662 NBPF19A0A087WUL8 3843 aa8.23□□□□□ -1.09
SYNPO-201ENST00000307662 ANK3Q12955 4377 aaKnown RBP8.21□□□□□ -1.1
SYNPO-201ENST00000307662 KRTAP15-1Q3LI76 137 aa8.2□□□□□ -1.1
SYNPO-201ENST00000307662 SMG1Q96Q15 3661 aaKnown RBP8.16□□□□□ -1.1
SYNPO-201ENST00000307662 DMDP11532 3685 aa8.15□□□□□ -1.1
SYNPO-201ENST00000307662 FBN3Q75N90 2809 aa8.09□□□□□ -1.11
SYNPO-201ENST00000307662 MUC3AQ02505 3323 aa8.04□□□□□ -1.12
SYNPO-201ENST00000307662 ZFHX3Q15911 3703 aa8.03□□□□□ -1.12
SYNPO-201ENST00000307662 INE1O15225 51 aa8.01□□□□□ -1.13
SYNPO-201ENST00000307662 KRTAP3-2Q9BYR7 98 aa7.99□□□□□ -1.13
SYNPO-201ENST00000307662 SVEP1Q4LDE5 3571 aa7.95□□□□□ -1.14
SYNPO-201ENST00000307662 SRRM2Q9UQ35 2752 aaKnown RBP7.95□□□□□ -1.14
SYNPO-201ENST00000307662 MEGF8Q7Z7M0 2845 aa7.95□□□□□ -1.14
SYNPO-201ENST00000307662 KRTAP3-3Q9BYR6 98 aa7.93□□□□□ -1.14
SYNPO-201ENST00000307662 TRRAPQ9Y4A5 3859 aa7.88□□□□□ -1.15
SYNPO-201ENST00000307662 MT1HL1P0DM35 61 aa7.86□□□□□ -1.15
SYNPO-201ENST00000307662 CSMD2Q7Z408 3487 aa7.85□□□□□ -1.15
SYNPO-201ENST00000307662 SPENQ96T58 3664 aaKnown RBP7.84□□□□□ -1.15
SYNPO-201ENST00000307662 COL7A1Q02388 2944 aa7.79□□□□□ -1.16
SYNPO-201ENST00000307662 KRTAP10-4P60372 401 aaPredicted RBP7.77□□□□□ -1.17
SYNPO-201ENST00000307662 CUBNO60494 3623 aa7.73□□□□□ -1.17
SYNPO-201ENST00000307662 HUWE1Q7Z6Z7 4374 aaKnown RBP7.73□□□□□ -1.17
SYNPO-201ENST00000307662 BSNQ9UPA5 3926 aa7.71□□□□□ -1.17
SYNPO-201ENST00000307662 KRTAP10-12P60413 245 aa7.65□□□□□ -1.18
SYNPO-201ENST00000307662 KRTAP23-1A1A580 65 aa7.63□□□□□ -1.19
SYNPO-201ENST00000307662 KRTAP12-3P60328 96 aa7.52□□□□□ -1.21
SYNPO-201ENST00000307662 KRTAP4-5Q9BYR2 181 aa7.5□□□□□ -1.21
SYNPO-201ENST00000307662 LCE3AQ5TA76 89 aa7.46□□□□□ -1.22
SYNPO-201ENST00000307662 VPS13CQ709C8 3753 aa7.46□□□□□ -1.22
SYNPO-201ENST00000307662 ALMS1Q8TCU4 4167 aa7.43□□□□□ -1.22
SYNPO-201ENST00000307662 CRCT1Q9UGL9 99 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms