RNA–Protein interactions for RNA: ENST00000284637.13

SH3RF1-201, Transcript of SH3 domain containing ring finger 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SH3RF1, Length 5,272 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-201ENST00000284637 M0QZ58 72 aa9.48□□□□□ -0.89
SH3RF1-201ENST00000284637 NDUFAF8A1L188 74 aa9.47□□□□□ -0.89
SH3RF1-201ENST00000284637 Q5VSD8 79 aa9.45□□□□□ -0.9
SH3RF1-201ENST00000284637 CELSR2Q9HCU4 2923 aa9.44□□□□□ -0.9
SH3RF1-201ENST00000284637 COL6A3P12111 3177 aa9.43□□□□□ -0.9
SH3RF1-201ENST00000284637 CFAP47Q6ZTR5 3102 aa9.42□□□□□ -0.9
SH3RF1-201ENST00000284637 ZZEF1O43149 2961 aa9.39□□□□□ -0.91
SH3RF1-201ENST00000284637 SEC61BP60468 96 aaKnown RBP9.39□□□□□ -0.91
SH3RF1-201ENST00000284637 NIPBLQ6KC79 2804 aaeCLIP9.35□□□□□ -0.91
SH3RF1-201ENST00000284637 A8MUU9 505 aa9.33□□□□□ -0.92
SH3RF1-201ENST00000284637 Q6ZRN7 208 aaPredicted RBP9.33□□□□□ -0.92
SH3RF1-201ENST00000284637 KMT2BQ9UMN6 2715 aaPredicted RBP9.32□□□□□ -0.92
SH3RF1-201ENST00000284637 KRTAP13-1Q8IUC0 172 aa9.29□□□□□ -0.92
SH3RF1-201ENST00000284637 KRTAP13-2Q52LG2 175 aa9.27□□□□□ -0.93
SH3RF1-201ENST00000284637 ZANQ9Y493 2812 aa9.27□□□□□ -0.93
SH3RF1-201ENST00000284637 DCHS2Q6V1P9 2916 aa9.26□□□□□ -0.93
SH3RF1-201ENST00000284637 CRYBG3Q68DQ2 2970 aa9.22□□□□□ -0.93
SH3RF1-201ENST00000284637 SPEGQ15772 3267 aa9.22□□□□□ -0.93
SH3RF1-201ENST00000284637 TENM4Q6N022 2769 aa9.19□□□□□ -0.94
SH3RF1-201ENST00000284637 C20orf166-AS1Q96NR2 134 aa9.16□□□□□ -0.94
SH3RF1-201ENST00000284637 EYSQ5T1H1 3165 aa9.15□□□□□ -0.94
SH3RF1-201ENST00000284637 RPS29P62273 56 aaKnown RBP9.14□□□□□ -0.95
SH3RF1-201ENST00000284637 PLAC4Q8WY50 150 aa9.09□□□□□ -0.95
SH3RF1-201ENST00000284637 FBN2P35556 2912 aa9.08□□□□□ -0.96
SH3RF1-201ENST00000284637 NF1P21359 2839 aa9.05□□□□□ -0.96
SH3RF1-201ENST00000284637 TNRC18O15417 2968 aaPredicted RBP9.03□□□□□ -0.96
SH3RF1-201ENST00000284637 TENM3Q9P273 2699 aa9□□□□□ -0.97
SH3RF1-201ENST00000284637 DMXL1Q9Y485 3027 aa9□□□□□ -0.97
SH3RF1-201ENST00000284637 H0YAA0 97 aa8.98□□□□□ -0.97
SH3RF1-201ENST00000284637 HRNRQ86YZ3 2850 aaPredicted RBP8.96□□□□□ -0.98
SH3RF1-201ENST00000284637 LOC400499M0QZD8 3231 aa8.95□□□□□ -0.98
SH3RF1-201ENST00000284637 USP34Q70CQ2 3546 aa8.94□□□□□ -0.98
SH3RF1-201ENST00000284637 MYO15AQ9UKN7 3530 aa8.93□□□□□ -0.98
SH3RF1-201ENST00000284637 C10orf95Q9H7T3 257 aa8.9□□□□□ -0.98
SH3RF1-201ENST00000284637 SPTBN5Q9NRC6 3674 aaKnown RBP8.87□□□□□ -0.99
SH3RF1-201ENST00000284637 TENM1Q9UKZ4 2725 aa8.83□□□□□ -1
SH3RF1-201ENST00000284637 P0C880 135 aa8.81□□□□□ -1
SH3RF1-201ENST00000284637 KRTAP1-4P0C5Y4 121 aa8.79□□□□□ -1
SH3RF1-201ENST00000284637 TNP1P09430 55 aa8.76□□□□□ -1.01
SH3RF1-201ENST00000284637 TGP01266 2768 aa8.74□□□□□ -1.01
SH3RF1-201ENST00000284637 CELSR1Q9NYQ6 3014 aa8.72□□□□□ -1.01
SH3RF1-201ENST00000284637 MXRA5Q9NR99 2828 aa8.7□□□□□ -1.02
SH3RF1-201ENST00000284637 PP632Q6XCG6 107 aa8.68□□□□□ -1.02
SH3RF1-201ENST00000284637 KRTAP13-3Q3SY46 172 aa8.68□□□□□ -1.02
SH3RF1-201ENST00000284637 XP32Q5T750 250 aa8.65□□□□□ -1.02
SH3RF1-201ENST00000284637 PKD1L1Q8TDX9 2849 aa8.63□□□□□ -1.03
SH3RF1-201ENST00000284637 PDZD2O15018 2839 aa8.61□□□□□ -1.03
SH3RF1-201ENST00000284637 TENM2Q9NT68 2774 aa8.58□□□□□ -1.04
SH3RF1-201ENST00000284637 WDFY3Q8IZQ1 3526 aa8.57□□□□□ -1.04
SH3RF1-201ENST00000284637 DCHS1Q96JQ0 3298 aa8.56□□□□□ -1.04
SH3RF1-201ENST00000284637 RELNP78509 3460 aa8.56□□□□□ -1.04
SH3RF1-201ENST00000284637 VWFP04275 2813 aa8.53□□□□□ -1.04
SH3RF1-201ENST00000284637 KRTAP10-8P60410 259 aa8.52□□□□□ -1.05
SH3RF1-201ENST00000284637 A0A1B0GVY2 172 aa8.49□□□□□ -1.05
SH3RF1-201ENST00000284637 TPRXLQ17RH7 258 aa8.38□□□□□ -1.07
SH3RF1-201ENST00000284637 ZFHX4Q86UP3 3567 aa8.37□□□□□ -1.07
SH3RF1-201ENST00000284637 FBN1P35555 2871 aaKnown RBP8.33□□□□□ -1.08
SH3RF1-201ENST00000284637 ASPMQ8IZT6 3477 aa8.31□□□□□ -1.08
SH3RF1-201ENST00000284637 SRRM2Q9UQ35 2752 aaKnown RBP8.3□□□□□ -1.08
SH3RF1-201ENST00000284637 KRTAP21-3Q3LHN1 58 aa8.29□□□□□ -1.08
SH3RF1-201ENST00000284637 CSMD1Q96PZ7 3565 aa8.27□□□□□ -1.09
SH3RF1-201ENST00000284637 LAMA5O15230 3695 aa8.26□□□□□ -1.09
SH3RF1-201ENST00000284637 KRTAP12-2P59991 146 aa8.24□□□□□ -1.09
SH3RF1-201ENST00000284637 KRTAP10-10P60014 251 aa8.2□□□□□ -1.1
SH3RF1-201ENST00000284637 KRTAP12-1P59990 96 aa8.14□□□□□ -1.11
SH3RF1-201ENST00000284637 FBN3Q75N90 2809 aa8.1□□□□□ -1.11
SH3RF1-201ENST00000284637 KRTAP15-1Q3LI76 137 aa8.1□□□□□ -1.11
SH3RF1-201ENST00000284637 KRTAP3-1Q9BYR8 98 aa8.09□□□□□ -1.11
SH3RF1-201ENST00000284637 CUBNO60494 3623 aa8.09□□□□□ -1.11
SH3RF1-201ENST00000284637 SMG1Q96Q15 3661 aaKnown RBP8.07□□□□□ -1.12
SH3RF1-201ENST00000284637 KRTAP13-4Q3LI77 160 aa8.01□□□□□ -1.13
SH3RF1-201ENST00000284637 SVEP1Q4LDE5 3571 aa7.99□□□□□ -1.13
SH3RF1-201ENST00000284637 PRO2289Q9P1D8 64 aa7.98□□□□□ -1.13
SH3RF1-201ENST00000284637 MEGF8Q7Z7M0 2845 aa7.98□□□□□ -1.13
SH3RF1-201ENST00000284637 NBPF19A0A087WUL8 3843 aa7.97□□□□□ -1.13
SH3RF1-201ENST00000284637 KRTAP10-6P60371 365 aaPredicted RBP7.97□□□□□ -1.13
SH3RF1-201ENST00000284637 ZFHX3Q15911 3703 aa7.94□□□□□ -1.14
SH3RF1-201ENST00000284637 OTOGQ6ZRI0 2925 aa7.94□□□□□ -1.14
SH3RF1-201ENST00000284637 COL7A1Q02388 2944 aa7.92□□□□□ -1.14
SH3RF1-201ENST00000284637 DMDP11532 3685 aa7.91□□□□□ -1.14
SH3RF1-201ENST00000284637 MUC3AQ02505 3323 aa7.84□□□□□ -1.15
SH3RF1-201ENST00000284637 CSMD2Q7Z408 3487 aa7.78□□□□□ -1.16
SH3RF1-201ENST00000284637 INE1O15225 51 aa7.71□□□□□ -1.18
SH3RF1-201ENST00000284637 KRTAP3-2Q9BYR7 98 aa7.67□□□□□ -1.18
SH3RF1-201ENST00000284637 TRRAPQ9Y4A5 3859 aa7.66□□□□□ -1.18
SH3RF1-201ENST00000284637 SPENQ96T58 3664 aaKnown RBP7.66□□□□□ -1.18
SH3RF1-201ENST00000284637 KRTAP3-3Q9BYR6 98 aa7.57□□□□□ -1.2
SH3RF1-201ENST00000284637 ANK3Q12955 4377 aaKnown RBP7.56□□□□□ -1.2
SH3RF1-201ENST00000284637 MT1HL1P0DM35 61 aa7.42□□□□□ -1.22
SH3RF1-201ENST00000284637 KRTAP10-4P60372 401 aaPredicted RBP7.26□□□□□ -1.25
SH3RF1-201ENST00000284637 KRTAP23-1A1A580 65 aa7.25□□□□□ -1.25
SH3RF1-201ENST00000284637 VPS13CQ709C8 3753 aa7.25□□□□□ -1.25
SH3RF1-201ENST00000284637 CSMD3Q7Z407 3707 aa7.23□□□□□ -1.25
SH3RF1-201ENST00000284637 KRTAP10-12P60413 245 aa7.21□□□□□ -1.26
SH3RF1-201ENST00000284637 BSNQ9UPA5 3926 aa7.19□□□□□ -1.26
SH3RF1-201ENST00000284637 HUWE1Q7Z6Z7 4374 aaKnown RBP7.17□□□□□ -1.26
SH3RF1-201ENST00000284637 LORP23490 312 aaPredicted RBP7.13□□□□□ -1.27
SH3RF1-201ENST00000284637 KRTAP4-5Q9BYR2 181 aa7.13□□□□□ -1.27
SH3RF1-201ENST00000284637 CRCT1Q9UGL9 99 aa7.09□□□□□ -1.27
SH3RF1-201ENST00000284637 KRTAP12-3P60328 96 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms