RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 KRTAP10-2P60368 255 aa12.63□□□□□ -0.39
TRIM28-201ENST00000253024 PRR15LQ9BU68 103 aa12.62□□□□□ -0.39
TRIM28-201ENST00000253024 Q1T7F1 81 aa12.61□□□□□ -0.39
TRIM28-201ENST00000253024 LINC00483Q53H64 154 aa12.6□□□□□ -0.39
TRIM28-201ENST00000253024 COA5Q86WW8 74 aa12.6□□□□□ -0.39
TRIM28-201ENST00000253024 ZNF706Q9Y5V0 76 aaPredicted RBP12.6□□□□□ -0.39
TRIM28-201ENST00000253024 Q6ZR54 194 aa12.6□□□□□ -0.39
TRIM28-201ENST00000253024 PLAC8Q9NZF1 115 aa12.59□□□□□ -0.39
TRIM28-201ENST00000253024 CHKB-CPT1BH3BT56 60 aa12.57□□□□□ -0.4
TRIM28-201ENST00000253024 SPAG11AQ6PDA7 123 aa12.57□□□□□ -0.4
TRIM28-201ENST00000253024 IGLV7-43P04211 117 aa12.57□□□□□ -0.4
TRIM28-201ENST00000253024 MRPL34Q9BQ48 92 aaKnown RBP12.57□□□□□ -0.4
TRIM28-201ENST00000253024 HYDINQ4G0P3 5121 aa12.55□□□□□ -0.4
TRIM28-201ENST00000253024 ALMS1Q8TCU4 4167 aa12.55□□□□□ -0.4
TRIM28-201ENST00000253024 PMAIP1Q13794 54 aa12.55□□□□□ -0.4
TRIM28-201ENST00000253024 Q5W150 140 aa12.55□□□□□ -0.4
TRIM28-201ENST00000253024 LRP1BQ9NZR2 4599 aa12.54□□□□□ -0.4
TRIM28-201ENST00000253024 Q8N9P0 234 aaPredicted RBP12.53□□□□□ -0.4
TRIM28-201ENST00000253024 DNAH5Q8TE73 4624 aa12.53□□□□□ -0.4
TRIM28-201ENST00000253024 Q5VV11 94 aa12.51□□□□□ -0.41
TRIM28-201ENST00000253024 H3BPC8 53 aa12.51□□□□□ -0.41
TRIM28-201ENST00000253024 SPANXA2-OT1Q8N9U9 137 aa12.5□□□□□ -0.41
TRIM28-201ENST00000253024 IGLV7-46A0A075B6I9 117 aa12.47□□□□□ -0.41
TRIM28-201ENST00000253024 SPTSSBQ8NFR3 76 aa12.46□□□□□ -0.41
TRIM28-201ENST00000253024 TP53AIP1Q9HCN2 124 aa12.46□□□□□ -0.42
TRIM28-201ENST00000253024 ASB16-AS1Q495Z4 193 aa12.44□□□□□ -0.42
TRIM28-201ENST00000253024 PRR26Q8N8Z3 221 aa12.42□□□□□ -0.42
TRIM28-201ENST00000253024 A6NED7 52 aa12.4□□□□□ -0.42
TRIM28-201ENST00000253024 HRES1P13985 223 aa12.4□□□□□ -0.42
TRIM28-201ENST00000253024 KRTAP10-1P60331 282 aa12.39□□□□□ -0.43
TRIM28-201ENST00000253024 KRTAP13-2Q52LG2 175 aa12.35□□□□□ -0.43
TRIM28-201ENST00000253024 FAT2Q9NYQ8 4349 aa12.35□□□□□ -0.43
TRIM28-201ENST00000253024 VPS13BQ7Z7G8 4022 aa12.35□□□□□ -0.43
TRIM28-201ENST00000253024 LIMD2Q9BT23 127 aa12.33□□□□□ -0.44
TRIM28-201ENST00000253024 LINC00313P59037 77 aa12.3□□□□□ -0.44
TRIM28-201ENST00000253024 PKHD1P08F94 4074 aa12.3□□□□□ -0.44
TRIM28-201ENST00000253024 LCA10Q71F78 164 aa12.27□□□□□ -0.44
TRIM28-201ENST00000253024 IGKV2D-30A0A075B6S6 120 aa12.24□□□□□ -0.45
TRIM28-201ENST00000253024 IGKV2-30P06310 120 aa12.24□□□□□ -0.45
TRIM28-201ENST00000253024 SPINK7P58062 85 aa12.23□□□□□ -0.45
TRIM28-201ENST00000253024 SSBP3-AS1Q7Z2R9 100 aa12.22□□□□□ -0.45
TRIM28-201ENST00000253024 PKD1P98161 4303 aa12.22□□□□□ -0.45
TRIM28-201ENST00000253024 LOC101927531A0A1B0GV80 90 aa12.21□□□□□ -0.45
TRIM28-201ENST00000253024 SMR3BP02814 79 aaPredicted RBP12.21□□□□□ -0.46
TRIM28-201ENST00000253024 PLA2G1BP04054 148 aaKnown RBP12.18□□□□□ -0.46
TRIM28-201ENST00000253024 KRTAP13-3Q3SY46 172 aa12.18□□□□□ -0.46
TRIM28-201ENST00000253024 Q75L30 129 aa12.14□□□□□ -0.47
TRIM28-201ENST00000253024 KRTAP1-4P0C5Y4 121 aa12.11□□□□□ -0.47
TRIM28-201ENST00000253024 FAT1Q14517 4588 aa12.1□□□□□ -0.47
TRIM28-201ENST00000253024 C4orf48Q5BLP8 95 aa12.1□□□□□ -0.47
TRIM28-201ENST00000253024 LINC01558Q9Y6Z2 57 aa12.1□□□□□ -0.47
TRIM28-201ENST00000253024 TYMSOSQ8TAI1 123 aa12.09□□□□□ -0.47
TRIM28-201ENST00000253024 C8orf87E5RJ46 101 aa12.07□□□□□ -0.48
TRIM28-201ENST00000253024 SPINK1P00995 79 aa12.07□□□□□ -0.48
TRIM28-201ENST00000253024 KTN1-AS1Q86SY8 53 aa12.06□□□□□ -0.48
TRIM28-201ENST00000253024 ACYP2P14621 99 aa12.06□□□□□ -0.48
TRIM28-201ENST00000253024 FAM229AH3BQW9 127 aa12.05□□□□□ -0.48
TRIM28-201ENST00000253024 RBM12B-AS1Q9P1G2 102 aa12.05□□□□□ -0.48
TRIM28-201ENST00000253024 Q6ZSA8 131 aa12.03□□□□□ -0.48
TRIM28-201ENST00000253024 ATP11AUNQ6ZP68 121 aa12.01□□□□□ -0.49
TRIM28-201ENST00000253024 Q8N1X5 172 aa12□□□□□ -0.49
TRIM28-201ENST00000253024 C9orf92A6NGG3 77 aa11.99□□□□□ -0.49
TRIM28-201ENST00000253024 KRTAP16-1A8MUX0 517 aa11.99□□□□□ -0.49
TRIM28-201ENST00000253024 CDC42SE1Q9NRR8 79 aa11.97□□□□□ -0.49
TRIM28-201ENST00000253024 C7orf65Q6ZTY9 151 aa11.96□□□□□ -0.49
TRIM28-201ENST00000253024 DMAC1Q96GE9 116 aa11.94□□□□□ -0.5
TRIM28-201ENST00000253024 A6NN06 94 aa11.91□□□□□ -0.5
TRIM28-201ENST00000253024 SACSQ9NZJ4 4579 aa11.91□□□□□ -0.5
TRIM28-201ENST00000253024 A0A1B0GU69 56 aa11.9□□□□□ -0.5
TRIM28-201ENST00000253024 DYNC1H1Q14204 4646 aaKnown RBP11.88□□□□□ -0.51
TRIM28-201ENST00000253024 LINC00304Q8N9R0 145 aa11.85□□□□□ -0.51
TRIM28-201ENST00000253024 FLG2Q5D862 2391 aaPredicted RBP11.76□□□□□ -0.53
TRIM28-201ENST00000253024 DMBT1Q9UGM3 2413 aaPredicted RBP11.75□□□□□ -0.53
TRIM28-201ENST00000253024 PRAC1Q96KF2 57 aa11.75□□□□□ -0.53
TRIM28-201ENST00000253024 ADM2Q7Z4H4 148 aa11.73□□□□□ -0.53
TRIM28-201ENST00000253024 KMT2CQ8NEZ4 4911 aaKnown RBP11.69□□□□□ -0.54
TRIM28-201ENST00000253024 LRP1Q07954 4544 aaKnown RBP11.67□□□□□ -0.54
TRIM28-201ENST00000253024 MYCBP2O75592 4640 aa11.64□□□□□ -0.55
TRIM28-201ENST00000253024 MIR22HGQ0VDD5 57 aa11.63□□□□□ -0.55
TRIM28-201ENST00000253024 APOBP04114 4563 aaKnown RBP11.62□□□□□ -0.55
TRIM28-201ENST00000253024 UQCR11O14957 56 aa11.58□□□□□ -0.56
TRIM28-201ENST00000253024 SPATA8Q6RVD6 105 aa11.48□□□□□ -0.57
TRIM28-201ENST00000253024 PKHD1L1Q86WI1 4243 aa11.46□□□□□ -0.57
TRIM28-201ENST00000253024 KRTAP3-1Q9BYR8 98 aa11.46□□□□□ -0.57
TRIM28-201ENST00000253024 KRTAP10-4P60372 401 aaPredicted RBP11.43□□□□□ -0.58
TRIM28-201ENST00000253024 RYR2Q92736 4967 aa11.43□□□□□ -0.58
TRIM28-201ENST00000253024 A0A1B0GVY2 172 aa11.41□□□□□ -0.58
TRIM28-201ENST00000253024 A8MUU9 505 aa11.37□□□□□ -0.59
TRIM28-201ENST00000253024 HSPG2P98160 4391 aa11.37□□□□□ -0.59
TRIM28-201ENST00000253024 C20orf166-AS1Q96NR2 134 aa11.36□□□□□ -0.59
TRIM28-201ENST00000253024 LINC01554Q52M75 96 aa11.32□□□□□ -0.6
TRIM28-201ENST00000253024 H0YAA0 97 aa11.3□□□□□ -0.6
TRIM28-201ENST00000253024 RPS29P62273 56 aaKnown RBP11.3□□□□□ -0.6
TRIM28-201ENST00000253024 FAT3Q8TDW7 4589 aa11.28□□□□□ -0.6
TRIM28-201ENST00000253024 CSAG1Q6PB30 78 aa11.25□□□□□ -0.61
TRIM28-201ENST00000253024 A0A1B0GU33 70 aa11.22□□□□□ -0.61
TRIM28-201ENST00000253024 CRIPTQ9P021 101 aa11.21□□□□□ -0.61
TRIM28-201ENST00000253024 RYR3Q15413 4870 aa11.21□□□□□ -0.62
TRIM28-201ENST00000253024 KIAA1109Q2LD37 5005 aa11.2□□□□□ -0.62
TRIM28-201ENST00000253024 Q5VSD8 79 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms