RNA–Protein interactions for RNA: ENST00000225964.9

COL1A1-201, Transcript of collagen type I alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL1A1, Length 6,727 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-201ENST00000225964 CRYBG3Q68DQ2 2970 aa6.96□□□□□ -1.3
COL1A1-201ENST00000225964 KMT2BQ9UMN6 2715 aaPredicted RBP6.95□□□□□ -1.3
COL1A1-201ENST00000225964 STAB2Q8WWQ8 2551 aa6.93□□□□□ -1.3
COL1A1-201ENST00000225964 ITPR2Q14571 2701 aa6.91□□□□□ -1.3
COL1A1-201ENST00000225964 TRANK1O15050 2925 aa6.9□□□□□ -1.31
COL1A1-201ENST00000225964 DSPP15924 2871 aaKnown RBP6.89□□□□□ -1.31
COL1A1-201ENST00000225964 WDFY3Q8IZQ1 3526 aa6.88□□□□□ -1.31
COL1A1-201ENST00000225964 KALRNO60229 2985 aa6.87□□□□□ -1.31
COL1A1-201ENST00000225964 IGSF10Q6WRI0 2623 aa6.86□□□□□ -1.31
COL1A1-201ENST00000225964 NBEAL2Q6ZNJ1 2754 aa6.86□□□□□ -1.31
COL1A1-201ENST00000225964 MAP1AP78559 2803 aaPredicted RBP6.86□□□□□ -1.31
COL1A1-201ENST00000225964 H0YAA0 97 aa6.85□□□□□ -1.31
COL1A1-201ENST00000225964 LAMA1P25391 3075 aa6.85□□□□□ -1.31
COL1A1-201ENST00000225964 DCHS1Q96JQ0 3298 aa6.84□□□□□ -1.31
COL1A1-201ENST00000225964 ZNF292O60281 2723 aa6.81□□□□□ -1.32
COL1A1-201ENST00000225964 KRTAP13-3Q3SY46 172 aa6.81□□□□□ -1.32
COL1A1-201ENST00000225964 SPTBN5Q9NRC6 3674 aaKnown RBP6.79□□□□□ -1.32
COL1A1-201ENST00000225964 P0C880 135 aa6.78□□□□□ -1.32
COL1A1-201ENST00000225964 DMXL2Q8TDJ6 3036 aa6.76□□□□□ -1.33
COL1A1-201ENST00000225964 EYSQ5T1H1 3165 aa6.76□□□□□ -1.33
COL1A1-201ENST00000225964 ASPMQ8IZT6 3477 aa6.74□□□□□ -1.33
COL1A1-201ENST00000225964 ASH1LQ9NR48 2969 aaKnown RBP6.71□□□□□ -1.34
COL1A1-201ENST00000225964 TENM4Q6N022 2769 aa6.7□□□□□ -1.34
COL1A1-201ENST00000225964 UBR5O95071 2799 aaPredicted RBP6.69□□□□□ -1.34
COL1A1-201ENST00000225964 LRBAP50851 2863 aa6.69□□□□□ -1.34
COL1A1-201ENST00000225964 FRYLO94915 3013 aa6.69□□□□□ -1.34
COL1A1-201ENST00000225964 NSD1Q96L73 2696 aaPredicted RBP6.69□□□□□ -1.34
COL1A1-201ENST00000225964 APCP25054 2843 aa6.67□□□□□ -1.34
COL1A1-201ENST00000225964 TACC2O95359 2948 aa6.66□□□□□ -1.34
COL1A1-201ENST00000225964 BOD1L1Q8NFC6 3051 aa6.65□□□□□ -1.34
COL1A1-201ENST00000225964 ATMQ13315 3056 aa6.64□□□□□ -1.35
COL1A1-201ENST00000225964 FLNCQ14315 2725 aa6.62□□□□□ -1.35
COL1A1-201ENST00000225964 COL12A1Q99715 3063 aa6.61□□□□□ -1.35
COL1A1-201ENST00000225964 LOC400499M0QZD8 3231 aa6.59□□□□□ -1.35
COL1A1-201ENST00000225964 HIVEP1P15822 2718 aa6.57□□□□□ -1.36
COL1A1-201ENST00000225964 UTP20O75691 2785 aaKnown RBP6.55□□□□□ -1.36
COL1A1-201ENST00000225964 CSMD1Q96PZ7 3565 aa6.55□□□□□ -1.36
COL1A1-201ENST00000225964 LAMA5O15230 3695 aa6.54□□□□□ -1.36
COL1A1-201ENST00000225964 KRTAP12-2P59991 146 aa6.53□□□□□ -1.36
COL1A1-201ENST00000225964 ADGRG4Q8IZF6 3080 aa6.52□□□□□ -1.37
COL1A1-201ENST00000225964 ITPR1Q14643 2758 aa6.51□□□□□ -1.37
COL1A1-201ENST00000225964 ZFHX4Q86UP3 3567 aa6.5□□□□□ -1.37
COL1A1-201ENST00000225964 NBEAQ8NFP9 2946 aa6.46□□□□□ -1.37
COL1A1-201ENST00000225964 ZZEF1O43149 2961 aa6.44□□□□□ -1.38
COL1A1-201ENST00000225964 KRTAP13-4Q3LI77 160 aa6.43□□□□□ -1.38
COL1A1-201ENST00000225964 RELNP78509 3460 aa6.41□□□□□ -1.38
COL1A1-201ENST00000225964 TNRC18O15417 2968 aaPredicted RBP6.39□□□□□ -1.39
COL1A1-201ENST00000225964 KRTAP15-1Q3LI76 137 aa6.37□□□□□ -1.39
COL1A1-201ENST00000225964 DMXL1Q9Y485 3027 aa6.36□□□□□ -1.39
COL1A1-201ENST00000225964 TENM2Q9NT68 2774 aa6.35□□□□□ -1.39
COL1A1-201ENST00000225964 KRTAP12-1P59990 96 aa6.33□□□□□ -1.4
COL1A1-201ENST00000225964 CELSR2Q9HCU4 2923 aa6.33□□□□□ -1.4
COL1A1-201ENST00000225964 NBPF19A0A087WUL8 3843 aa6.27□□□□□ -1.41
COL1A1-201ENST00000225964 TENM1Q9UKZ4 2725 aa6.26□□□□□ -1.41
COL1A1-201ENST00000225964 DMDP11532 3685 aa6.23□□□□□ -1.41
COL1A1-201ENST00000225964 DCHS2Q6V1P9 2916 aa6.22□□□□□ -1.41
COL1A1-201ENST00000225964 CUBNO60494 3623 aa6.22□□□□□ -1.41
COL1A1-201ENST00000225964 CRCT1Q9UGL9 99 aa6.2□□□□□ -1.42
COL1A1-201ENST00000225964 CELSR1Q9NYQ6 3014 aa6.19□□□□□ -1.42
COL1A1-201ENST00000225964 SMG1Q96Q15 3661 aaKnown RBP6.19□□□□□ -1.42
COL1A1-201ENST00000225964 KRTAP3-1Q9BYR8 98 aa6.18□□□□□ -1.42
COL1A1-201ENST00000225964 SPENQ96T58 3664 aaKnown RBP6.17□□□□□ -1.42
COL1A1-201ENST00000225964 SVEP1Q4LDE5 3571 aa6.16□□□□□ -1.42
COL1A1-201ENST00000225964 TGP01266 2768 aa6.1□□□□□ -1.43
COL1A1-201ENST00000225964 TENM3Q9P273 2699 aa6.1□□□□□ -1.43
COL1A1-201ENST00000225964 NIPBLQ6KC79 2804 aaeCLIP6.08□□□□□ -1.44
COL1A1-201ENST00000225964 HRNRQ86YZ3 2850 aaPredicted RBP6.08□□□□□ -1.44
COL1A1-201ENST00000225964 NF1P21359 2839 aa6.07□□□□□ -1.44
COL1A1-201ENST00000225964 PKD1L1Q8TDX9 2849 aa6.07□□□□□ -1.44
COL1A1-201ENST00000225964 FBN2P35556 2912 aa6.06□□□□□ -1.44
COL1A1-201ENST00000225964 ZANQ9Y493 2812 aa6.06□□□□□ -1.44
COL1A1-201ENST00000225964 KRTAP10-12P60413 245 aa6.02□□□□□ -1.45
COL1A1-201ENST00000225964 KRTAP10-6P60371 365 aaPredicted RBP5.99□□□□□ -1.45
COL1A1-201ENST00000225964 ZFHX3Q15911 3703 aa5.99□□□□□ -1.45
COL1A1-201ENST00000225964 VWFP04275 2813 aa5.96□□□□□ -1.46
COL1A1-201ENST00000225964 MT1HL1P0DM35 61 aa5.94□□□□□ -1.46
COL1A1-201ENST00000225964 KRTAP4-5Q9BYR2 181 aa5.93□□□□□ -1.46
COL1A1-201ENST00000225964 ANK3Q12955 4377 aaKnown RBP5.88□□□□□ -1.47
COL1A1-201ENST00000225964 INE1O15225 51 aa5.83□□□□□ -1.48
COL1A1-201ENST00000225964 PDZD2O15018 2839 aa5.82□□□□□ -1.48
COL1A1-201ENST00000225964 MUC3AQ02505 3323 aa5.8□□□□□ -1.48
COL1A1-201ENST00000225964 CSMD2Q7Z408 3487 aa5.8□□□□□ -1.48
COL1A1-201ENST00000225964 ALMS1Q8TCU4 4167 aa5.79□□□□□ -1.48
COL1A1-201ENST00000225964 MXRA5Q9NR99 2828 aa5.78□□□□□ -1.48
COL1A1-201ENST00000225964 KRTAP12-3P60328 96 aa5.78□□□□□ -1.48
COL1A1-201ENST00000225964 LORP23490 312 aaPredicted RBP5.77□□□□□ -1.48
COL1A1-201ENST00000225964 KRTAP3-3Q9BYR6 98 aa5.77□□□□□ -1.49
COL1A1-201ENST00000225964 LCE3AQ5TA76 89 aa5.75□□□□□ -1.49
COL1A1-201ENST00000225964 KRTAP3-2Q9BYR7 98 aa5.75□□□□□ -1.49
COL1A1-201ENST00000225964 HUWE1Q7Z6Z7 4374 aaKnown RBP5.71□□□□□ -1.5
COL1A1-201ENST00000225964 FBN3Q75N90 2809 aa5.71□□□□□ -1.5
COL1A1-201ENST00000225964 CSMD3Q7Z407 3707 aa5.67□□□□□ -1.5
COL1A1-201ENST00000225964 KRTAP8-1Q8IUC2 63 aa5.66□□□□□ -1.5
COL1A1-201ENST00000225964 VPS13CQ709C8 3753 aa5.65□□□□□ -1.51
COL1A1-201ENST00000225964 KRTAP10-4P60372 401 aaPredicted RBP5.63□□□□□ -1.51
COL1A1-201ENST00000225964 SRRM2Q9UQ35 2752 aaKnown RBP5.62□□□□□ -1.51
COL1A1-201ENST00000225964 KRTAP10-5P60370 271 aa5.61□□□□□ -1.51
COL1A1-201ENST00000225964 FBN1P35555 2871 aaKnown RBP5.59□□□□□ -1.51
COL1A1-201ENST00000225964 TRRAPQ9Y4A5 3859 aa5.54□□□□□ -1.52
COL1A1-201ENST00000225964 KRTAP23-1A1A580 65 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms