RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 RYR1P21817 5038 aa11.47□□□□□ -0.57
CLN3-258ENST00000637184 SMIM29Q86T20 159 aa11.46□□□□□ -0.57
CLN3-258ENST00000637184 OBSCN-AS1Q96MR7 158 aa11.46□□□□□ -0.57
CLN3-258ENST00000637184 PLA2G1BP04054 148 aaKnown RBP11.45□□□□□ -0.58
CLN3-258ENST00000637184 LINC00483Q53H64 154 aa11.45□□□□□ -0.58
CLN3-258ENST00000637184 HSPG2P98160 4391 aa11.45□□□□□ -0.58
CLN3-258ENST00000637184 KRTAP10-4P60372 401 aaPredicted RBP11.44□□□□□ -0.58
CLN3-258ENST00000637184 RBM3P98179 157 aaKnown RBP11.44□□□□□ -0.58
CLN3-258ENST00000637184 F8WEM9 126 aa11.44□□□□□ -0.58
CLN3-258ENST00000637184 SPINK6Q6UWN8 80 aa11.44□□□□□ -0.58
CLN3-258ENST00000637184 C14orf132Q9NPU4 83 aa11.42□□□□□ -0.58
CLN3-258ENST00000637184 KIAA1109Q2LD37 5005 aa11.41□□□□□ -0.58
CLN3-258ENST00000637184 ANAPC11Q9NYG5 84 aa11.41□□□□□ -0.58
CLN3-258ENST00000637184 DSCR8Q96T75 97 aa11.4□□□□□ -0.58
CLN3-258ENST00000637184 Q5VSD8 79 aa11.39□□□□□ -0.59
CLN3-258ENST00000637184 IGLV9-49A0A0B4J1Y8 123 aa11.36□□□□□ -0.59
CLN3-258ENST00000637184 TRBV7-4A0A0J9YYF1 115 aa11.36□□□□□ -0.59
CLN3-258ENST00000637184 LOC110117498A0A087WWA1 95 aa11.35□□□□□ -0.59
CLN3-258ENST00000637184 IGLV8-61A0A075B6I0 122 aa11.34□□□□□ -0.59
CLN3-258ENST00000637184 J3QR89 54 aa11.33□□□□□ -0.59
CLN3-258ENST00000637184 KRTAP1-4P0C5Y4 121 aa11.33□□□□□ -0.59
CLN3-258ENST00000637184 PDE6GP18545 87 aa11.33□□□□□ -0.59
CLN3-258ENST00000637184 C9orf153Q5TBE3 101 aa11.33□□□□□ -0.59
CLN3-258ENST00000637184 Q6ZQT0 140 aa11.33□□□□□ -0.6
CLN3-258ENST00000637184 Q8N1X5 172 aa11.33□□□□□ -0.6
CLN3-258ENST00000637184 FAM229BQ4G0N7 80 aa11.32□□□□□ -0.6
CLN3-258ENST00000637184 K7ERU9 68 aa11.3□□□□□ -0.6
CLN3-258ENST00000637184 CCKP06307 115 aa11.3□□□□□ -0.6
CLN3-258ENST00000637184 MOBPQ13875 183 aa11.3□□□□□ -0.6
CLN3-258ENST00000637184 Q6JHZ5 121 aa11.3□□□□□ -0.6
CLN3-258ENST00000637184 IGFL1Q6UW32 110 aa11.29□□□□□ -0.6
CLN3-258ENST00000637184 CRYGAP11844 174 aa11.28□□□□□ -0.6
CLN3-258ENST00000637184 Q8NBF4 154 aa11.28□□□□□ -0.6
CLN3-258ENST00000637184 VPS25Q9BRG1 176 aa11.28□□□□□ -0.6
CLN3-258ENST00000637184 KRTAP17-1Q9BYP8 105 aa11.28□□□□□ -0.6
CLN3-258ENST00000637184 A0A087X002 238 aa11.28□□□□□ -0.6
CLN3-258ENST00000637184 C21orf62-AS1Q17RA5 79 aa11.28□□□□□ -0.6
CLN3-258ENST00000637184 A0A0G2JQZ4 141 aa11.26□□□□□ -0.61
CLN3-258ENST00000637184 PKHD1L1Q86WI1 4243 aa11.25□□□□□ -0.61
CLN3-258ENST00000637184 KRTAP13-2Q52LG2 175 aa11.23□□□□□ -0.61
CLN3-258ENST00000637184 BIRC6Q9NR09 4857 aa11.23□□□□□ -0.61
CLN3-258ENST00000637184 A0A1W2PNM2 257 aa11.23□□□□□ -0.61
CLN3-258ENST00000637184 SSBP3-AS1Q7Z2R9 100 aa11.23□□□□□ -0.61
CLN3-258ENST00000637184 FAM240AA0A1B0GVK7 77 aa11.21□□□□□ -0.61
CLN3-258ENST00000637184 ACYP1P07311 99 aa11.21□□□□□ -0.62
CLN3-258ENST00000637184 PRR26Q8N8Z3 221 aa11.18□□□□□ -0.62
CLN3-258ENST00000637184 TYMSOSQ8TAI1 123 aa11.18□□□□□ -0.62
CLN3-258ENST00000637184 A0A1B0GW54 56 aa11.16□□□□□ -0.62
CLN3-258ENST00000637184 Q6Q795 121 aa11.16□□□□□ -0.62
CLN3-258ENST00000637184 LINC00846Q9NV44 126 aa11.15□□□□□ -0.62
CLN3-258ENST00000637184 HRCT1Q6UXD1 115 aa11.14□□□□□ -0.63
CLN3-258ENST00000637184 A0A087WSZ3 146 aa11.11□□□□□ -0.63
CLN3-258ENST00000637184 TRBV7-7A0A0K0K1E9 115 aa11.11□□□□□ -0.63
CLN3-258ENST00000637184 CD164Q04900 197 aa11.11□□□□□ -0.63
CLN3-258ENST00000637184 UBL5Q9BZL1 73 aa11.09□□□□□ -0.63
CLN3-258ENST00000637184 C4orf48Q5BLP8 95 aa11.07□□□□□ -0.64
CLN3-258ENST00000637184 KRTAP4-5Q9BYR2 181 aa11.07□□□□□ -0.64
CLN3-258ENST00000637184 CDIP1Q9H305 208 aa11.07□□□□□ -0.64
CLN3-258ENST00000637184 NREPQ16612 68 aa11.05□□□□□ -0.64
CLN3-258ENST00000637184 FLG2Q5D862 2391 aaPredicted RBP11.05□□□□□ -0.64
CLN3-258ENST00000637184 Q6ZVQ6 151 aa11.05□□□□□ -0.64
CLN3-258ENST00000637184 LINC00304Q8N9R0 145 aa11.04□□□□□ -0.64
CLN3-258ENST00000637184 HERC2O95714 4834 aa11.04□□□□□ -0.64
CLN3-258ENST00000637184 LRP1Q07954 4544 aaKnown RBP11.02□□□□□ -0.64
CLN3-258ENST00000637184 SS18L2Q9UHA2 77 aa11.02□□□□□ -0.65
CLN3-258ENST00000637184 SPAG11AQ6PDA7 123 aa11.01□□□□□ -0.65
CLN3-258ENST00000637184 SPINK1P00995 79 aa11□□□□□ -0.65
CLN3-258ENST00000637184 FAT3Q8TDW7 4589 aa11□□□□□ -0.65
CLN3-258ENST00000637184 KRTAP10-8P60410 259 aa11□□□□□ -0.65
CLN3-258ENST00000637184 LINC00643Q86TS7 51 aa10.99□□□□□ -0.65
CLN3-258ENST00000637184 LIMD2Q9BT23 127 aa10.96□□□□□ -0.65
CLN3-258ENST00000637184 MYCBP2O75592 4640 aa10.95□□□□□ -0.66
CLN3-258ENST00000637184 Q5XG85 94 aa10.95□□□□□ -0.66
CLN3-258ENST00000637184 OXTP01178 125 aa10.94□□□□□ -0.66
CLN3-258ENST00000637184 TNXBP22105 4242 aa10.94□□□□□ -0.66
CLN3-258ENST00000637184 RPS29P62273 56 aaKnown RBP10.93□□□□□ -0.66
CLN3-258ENST00000637184 BPY2O14599 106 aa10.93□□□□□ -0.66
CLN3-258ENST00000637184 LINC00472Q9H8W2 130 aa10.93□□□□□ -0.66
CLN3-258ENST00000637184 DEFB116Q30KQ4 102 aa10.92□□□□□ -0.66
CLN3-258ENST00000637184 ASB16-AS1Q495Z4 193 aa10.92□□□□□ -0.66
CLN3-258ENST00000637184 ABCA13Q86UQ4 5058 aa10.91□□□□□ -0.66
CLN3-258ENST00000637184 ATP5EP2Q5VTU8 51 aa10.91□□□□□ -0.66
CLN3-258ENST00000637184 IGKV3D-7A0A0C4DH55 119 aa10.9□□□□□ -0.66
CLN3-258ENST00000637184 SIGMAR1Q99720 223 aa10.9□□□□□ -0.66
CLN3-258ENST00000637184 CXCL6P80162 114 aa10.9□□□□□ -0.67
CLN3-258ENST00000637184 MT1HL1P0DM35 61 aa10.89□□□□□ -0.67
CLN3-258ENST00000637184 Q96NJ1 140 aa10.89□□□□□ -0.67
CLN3-258ENST00000637184 MT-ATP8P03928 68 aa10.88□□□□□ -0.67
CLN3-258ENST00000637184 KRTAP29-1A8MX34 341 aaPredicted RBP10.86□□□□□ -0.67
CLN3-258ENST00000637184 J3KT08 172 aa10.85□□□□□ -0.67
CLN3-258ENST00000637184 IGKV4-1P06312 121 aa10.85□□□□□ -0.67
CLN3-258ENST00000637184 DSCR10P59022 87 aa10.83□□□□□ -0.68
CLN3-258ENST00000637184 C1orf195Q5TG92 126 aa10.83□□□□□ -0.68
CLN3-258ENST00000637184 DMBT1Q9UGM3 2413 aaPredicted RBP10.81□□□□□ -0.68
CLN3-258ENST00000637184 HIST1H4AP62805 103 aaKnown RBP10.8□□□□□ -0.68
CLN3-258ENST00000637184 Q8N9L7 120 aa10.8□□□□□ -0.68
CLN3-258ENST00000637184 A8MWP4 228 aa10.78□□□□□ -0.68
CLN3-258ENST00000637184 IMUPQ9GZP8 106 aa10.78□□□□□ -0.68
CLN3-258ENST00000637184 K7EQZ3 153 aa10.77□□□□□ -0.68
CLN3-258ENST00000637184 NDUFB1O75438 58 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 100.8 ms