RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 A0A1B0GV72 72 aa8.24□□□□□ -1.09
CCDC40-209ENST00000573474 FAM229AH3BQW9 127 aa8.24□□□□□ -1.09
CCDC40-209ENST00000573474 SPINK6Q6UWN8 80 aa8.24□□□□□ -1.09
CCDC40-209ENST00000573474 F8WEM9 126 aa8.23□□□□□ -1.09
CCDC40-209ENST00000573474 PLA2G1BP04054 148 aaKnown RBP8.23□□□□□ -1.09
CCDC40-209ENST00000573474 KRTAP10-4P60372 401 aaPredicted RBP8.23□□□□□ -1.09
CCDC40-209ENST00000573474 C14orf132Q9NPU4 83 aa8.22□□□□□ -1.09
CCDC40-209ENST00000573474 FAT1Q14517 4588 aa8.21□□□□□ -1.09
CCDC40-209ENST00000573474 EPPK1P58107 5090 aaKnown RBP8.21□□□□□ -1.09
CCDC40-209ENST00000573474 DSCR8Q96T75 97 aa8.21□□□□□ -1.1
CCDC40-209ENST00000573474 HSPG2P98160 4391 aa8.2□□□□□ -1.1
CCDC40-209ENST00000573474 IGLV8-61A0A075B6I0 122 aa8.19□□□□□ -1.1
CCDC40-209ENST00000573474 LOC110117498A0A087WWA1 95 aa8.19□□□□□ -1.1
CCDC40-209ENST00000573474 PDE6GP18545 87 aa8.19□□□□□ -1.1
CCDC40-209ENST00000573474 ANAPC11Q9NYG5 84 aa8.19□□□□□ -1.1
CCDC40-209ENST00000573474 RYR1P21817 5038 aa8.19□□□□□ -1.1
CCDC40-209ENST00000573474 TRBV7-4A0A0J9YYF1 115 aa8.18□□□□□ -1.1
CCDC40-209ENST00000573474 J3QR89 54 aa8.18□□□□□ -1.1
CCDC40-209ENST00000573474 FAM229BQ4G0N7 80 aa8.17□□□□□ -1.1
CCDC40-209ENST00000573474 Q5VSD8 79 aa8.17□□□□□ -1.1
CCDC40-209ENST00000573474 Q6ZQT0 140 aa8.17□□□□□ -1.1
CCDC40-209ENST00000573474 IGLV9-49A0A0B4J1Y8 123 aa8.16□□□□□ -1.1
CCDC40-209ENST00000573474 K7ERU9 68 aa8.16□□□□□ -1.1
CCDC40-209ENST00000573474 CCKP06307 115 aa8.16□□□□□ -1.1
CCDC40-209ENST00000573474 C21orf62-AS1Q17RA5 79 aa8.16□□□□□ -1.1
CCDC40-209ENST00000573474 Q6JHZ5 121 aa8.16□□□□□ -1.1
CCDC40-209ENST00000573474 KRTAP1-4P0C5Y4 121 aa8.15□□□□□ -1.1
CCDC40-209ENST00000573474 C9orf153Q5TBE3 101 aa8.14□□□□□ -1.11
CCDC40-209ENST00000573474 Q8N1X5 172 aa8.14□□□□□ -1.11
CCDC40-209ENST00000573474 CRYGAP11844 174 aa8.12□□□□□ -1.11
CCDC40-209ENST00000573474 IGFL1Q6UW32 110 aa8.12□□□□□ -1.11
CCDC40-209ENST00000573474 Q8NBF4 154 aa8.12□□□□□ -1.11
CCDC40-209ENST00000573474 MOBPQ13875 183 aa8.11□□□□□ -1.11
CCDC40-209ENST00000573474 PKHD1L1Q86WI1 4243 aa8.11□□□□□ -1.11
CCDC40-209ENST00000573474 KIAA1109Q2LD37 5005 aa8.1□□□□□ -1.11
CCDC40-209ENST00000573474 A0A087X002 238 aa8.1□□□□□ -1.11
CCDC40-209ENST00000573474 ACYP1P07311 99 aa8.1□□□□□ -1.11
CCDC40-209ENST00000573474 SSBP3-AS1Q7Z2R9 100 aa8.1□□□□□ -1.11
CCDC40-209ENST00000573474 VPS25Q9BRG1 176 aa8.1□□□□□ -1.11
CCDC40-209ENST00000573474 KRTAP17-1Q9BYP8 105 aa8.1□□□□□ -1.11
CCDC40-209ENST00000573474 FAM240AA0A1B0GVK7 77 aa8.09□□□□□ -1.11
CCDC40-209ENST00000573474 A0A1W2PNM2 257 aa8.09□□□□□ -1.11
CCDC40-209ENST00000573474 A0A0G2JQZ4 141 aa8.08□□□□□ -1.12
CCDC40-209ENST00000573474 KRTAP13-2Q52LG2 175 aa8.08□□□□□ -1.12
CCDC40-209ENST00000573474 A0A1B0GW54 56 aa8.07□□□□□ -1.12
CCDC40-209ENST00000573474 Q6Q795 121 aa8.06□□□□□ -1.12
CCDC40-209ENST00000573474 PRR26Q8N8Z3 221 aa8.03□□□□□ -1.12
CCDC40-209ENST00000573474 TYMSOSQ8TAI1 123 aa8.03□□□□□ -1.12
CCDC40-209ENST00000573474 LINC00846Q9NV44 126 aa8.03□□□□□ -1.12
CCDC40-209ENST00000573474 BIRC6Q9NR09 4857 aa8.02□□□□□ -1.13
CCDC40-209ENST00000573474 CD164Q04900 197 aa8.01□□□□□ -1.13
CCDC40-209ENST00000573474 TRBV7-7A0A0K0K1E9 115 aa8□□□□□ -1.13
CCDC40-209ENST00000573474 HRCT1Q6UXD1 115 aa8□□□□□ -1.13
CCDC40-209ENST00000573474 CDIP1Q9H305 208 aa8□□□□□ -1.13
CCDC40-209ENST00000573474 UBL5Q9BZL1 73 aa7.99□□□□□ -1.13
CCDC40-209ENST00000573474 A0A087WSZ3 146 aa7.98□□□□□ -1.13
CCDC40-209ENST00000573474 NREPQ16612 68 aa7.97□□□□□ -1.13
CCDC40-209ENST00000573474 C4orf48Q5BLP8 95 aa7.96□□□□□ -1.14
CCDC40-209ENST00000573474 Q6ZVQ6 151 aa7.96□□□□□ -1.14
CCDC40-209ENST00000573474 SPAG11AQ6PDA7 123 aa7.94□□□□□ -1.14
CCDC40-209ENST00000573474 LINC00643Q86TS7 51 aa7.94□□□□□ -1.14
CCDC40-209ENST00000573474 LINC00304Q8N9R0 145 aa7.94□□□□□ -1.14
CCDC40-209ENST00000573474 SS18L2Q9UHA2 77 aa7.94□□□□□ -1.14
CCDC40-209ENST00000573474 KRTAP10-8P60410 259 aa7.93□□□□□ -1.14
CCDC40-209ENST00000573474 KRTAP4-5Q9BYR2 181 aa7.93□□□□□ -1.14
CCDC40-209ENST00000573474 SPINK1P00995 79 aa7.92□□□□□ -1.14
CCDC40-209ENST00000573474 HERC2O95714 4834 aa7.9□□□□□ -1.14
CCDC40-209ENST00000573474 Q5XG85 94 aa7.9□□□□□ -1.14
CCDC40-209ENST00000573474 FAT3Q8TDW7 4589 aa7.9□□□□□ -1.15
CCDC40-209ENST00000573474 LIMD2Q9BT23 127 aa7.89□□□□□ -1.15
CCDC40-209ENST00000573474 OXTP01178 125 aa7.88□□□□□ -1.15
CCDC40-209ENST00000573474 RPS29P62273 56 aaKnown RBP7.88□□□□□ -1.15
CCDC40-209ENST00000573474 ASB16-AS1Q495Z4 193 aa7.88□□□□□ -1.15
CCDC40-209ENST00000573474 ATP5EP2Q5VTU8 51 aa7.88□□□□□ -1.15
CCDC40-209ENST00000573474 LINC00472Q9H8W2 130 aa7.88□□□□□ -1.15
CCDC40-209ENST00000573474 LRP1Q07954 4544 aaKnown RBP7.87□□□□□ -1.15
CCDC40-209ENST00000573474 BPY2O14599 106 aa7.87□□□□□ -1.15
CCDC40-209ENST00000573474 IGKV3D-7A0A0C4DH55 119 aa7.86□□□□□ -1.15
CCDC40-209ENST00000573474 CXCL6P80162 114 aa7.86□□□□□ -1.15
CCDC40-209ENST00000573474 FLG2Q5D862 2391 aaPredicted RBP7.85□□□□□ -1.15
CCDC40-209ENST00000573474 MT-ATP8P03928 68 aa7.85□□□□□ -1.15
CCDC40-209ENST00000573474 SIGMAR1Q99720 223 aa7.85□□□□□ -1.15
CCDC40-209ENST00000573474 TNXBP22105 4242 aa7.85□□□□□ -1.15
CCDC40-209ENST00000573474 J3KT08 172 aa7.84□□□□□ -1.15
CCDC40-209ENST00000573474 DEFB116Q30KQ4 102 aa7.84□□□□□ -1.15
CCDC40-209ENST00000573474 Q96NJ1 140 aa7.84□□□□□ -1.15
CCDC40-209ENST00000573474 MT1HL1P0DM35 61 aa7.83□□□□□ -1.16
CCDC40-209ENST00000573474 KRTAP29-1A8MX34 341 aaPredicted RBP7.82□□□□□ -1.16
CCDC40-209ENST00000573474 IGKV4-1P06312 121 aa7.81□□□□□ -1.16
CCDC40-209ENST00000573474 C1orf195Q5TG92 126 aa7.81□□□□□ -1.16
CCDC40-209ENST00000573474 MYCBP2O75592 4640 aa7.8□□□□□ -1.16
CCDC40-209ENST00000573474 DSCR10P59022 87 aa7.79□□□□□ -1.16
CCDC40-209ENST00000573474 IMUPQ9GZP8 106 aa7.79□□□□□ -1.16
CCDC40-209ENST00000573474 A8MWP4 228 aa7.77□□□□□ -1.17
CCDC40-209ENST00000573474 HIST1H4AP62805 103 aaKnown RBP7.77□□□□□ -1.17
CCDC40-209ENST00000573474 NDUFB1O75438 58 aa7.76□□□□□ -1.17
CCDC40-209ENST00000573474 Q8N9L7 120 aa7.76□□□□□ -1.17
CCDC40-209ENST00000573474 ABCA13Q86UQ4 5058 aa7.76□□□□□ -1.17
CCDC40-209ENST00000573474 K7EQZ3 153 aa7.74□□□□□ -1.17
CCDC40-209ENST00000573474 PRR15Q8IV56 129 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms