RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 COL5A1-AS1Q5SY13 56 aa7.48□□□□□ -1.21
SHMT2-227ENST00000557269 LST1O00453 97 aa7.47□□□□□ -1.21
SHMT2-227ENST00000557269 SNCGO76070 127 aa7.46□□□□□ -1.22
SHMT2-227ENST00000557269 TCL1BO95988 128 aa7.46□□□□□ -1.22
SHMT2-227ENST00000557269 Q8NBF4 154 aa7.46□□□□□ -1.22
SHMT2-227ENST00000557269 LAMTOR3Q9UHA4 124 aa7.46□□□□□ -1.22
SHMT2-227ENST00000557269 DMBT1Q9UGM3 2413 aaPredicted RBP7.46□□□□□ -1.22
SHMT2-227ENST00000557269 C9orf153Q5TBE3 101 aa7.45□□□□□ -1.22
SHMT2-227ENST00000557269 A0A0G2JQZ4 141 aa7.44□□□□□ -1.22
SHMT2-227ENST00000557269 TRACP01848 142 aa7.44□□□□□ -1.22
SHMT2-227ENST00000557269 A0A1W2PPM0 123 aa7.43□□□□□ -1.22
SHMT2-227ENST00000557269 OCIAD2Q56VL3 154 aa7.43□□□□□ -1.22
SHMT2-227ENST00000557269 SSBP3-AS1Q7Z2R9 100 aa7.43□□□□□ -1.22
SHMT2-227ENST00000557269 LINC00304Q8N9R0 145 aa7.43□□□□□ -1.22
SHMT2-227ENST00000557269 DNAL4O96015 105 aa7.42□□□□□ -1.22
SHMT2-227ENST00000557269 PPDPFLQ8WWR9 84 aa7.42□□□□□ -1.22
SHMT2-227ENST00000557269 FABP2P12104 132 aa7.41□□□□□ -1.22
SHMT2-227ENST00000557269 ATXN8Q156A1 80 aa7.41□□□□□ -1.22
SHMT2-227ENST00000557269 ORMDL1Q9P0S3 153 aa7.41□□□□□ -1.22
SHMT2-227ENST00000557269 NDUFV3P56181 108 aaKnown RBP7.4□□□□□ -1.22
SHMT2-227ENST00000557269 HERC1Q15751 4861 aa7.38□□□□□ -1.23
SHMT2-227ENST00000557269 IGLV8-61A0A075B6I0 122 aa7.38□□□□□ -1.23
SHMT2-227ENST00000557269 TRBV20-1A0A075B6N2 111 aa7.38□□□□□ -1.23
SHMT2-227ENST00000557269 LYRM7Q5U5X0 104 aa7.38□□□□□ -1.23
SHMT2-227ENST00000557269 F8WEM9 126 aa7.37□□□□□ -1.23
SHMT2-227ENST00000557269 BAALC-AS2P0C853 105 aa7.37□□□□□ -1.23
SHMT2-227ENST00000557269 HRCT1Q6UXD1 115 aa7.37□□□□□ -1.23
SHMT2-227ENST00000557269 TMEM256-PLSCR3K7ERE1 68 aa7.36□□□□□ -1.23
SHMT2-227ENST00000557269 SPAG11AQ6PDA7 123 aa7.36□□□□□ -1.23
SHMT2-227ENST00000557269 IGFL1Q6UW32 110 aa7.36□□□□□ -1.23
SHMT2-227ENST00000557269 A0A1B0GV72 72 aa7.35□□□□□ -1.23
SHMT2-227ENST00000557269 H3BMG7 143 aa7.35□□□□□ -1.23
SHMT2-227ENST00000557269 GHRHP01286 108 aa7.35□□□□□ -1.23
SHMT2-227ENST00000557269 C4orf48Q5BLP8 95 aa7.35□□□□□ -1.23
SHMT2-227ENST00000557269 SPCS1Q9Y6A9 102 aa7.35□□□□□ -1.23
SHMT2-227ENST00000557269 C9JAW5 83 aa7.34□□□□□ -1.23
SHMT2-227ENST00000557269 H3BQ85 93 aa7.34□□□□□ -1.23
SHMT2-227ENST00000557269 SPINK1P00995 79 aa7.33□□□□□ -1.24
SHMT2-227ENST00000557269 UBE2V1Q13404 147 aa7.33□□□□□ -1.24
SHMT2-227ENST00000557269 Q6JHZ5 121 aa7.33□□□□□ -1.24
SHMT2-227ENST00000557269 MTURNQ8N3F0 131 aa7.33□□□□□ -1.24
SHMT2-227ENST00000557269 ANKRD29Q8N6D5 301 aa7.32□□□□□ -1.24
SHMT2-227ENST00000557269 RETNLBQ9BQ08 111 aa7.31□□□□□ -1.24
SHMT2-227ENST00000557269 K7EP34 96 aa7.3□□□□□ -1.24
SHMT2-227ENST00000557269 CD164Q04900 197 aa7.3□□□□□ -1.24
SHMT2-227ENST00000557269 A0A1B0GV90 55 aa7.28□□□□□ -1.24
SHMT2-227ENST00000557269 RPS29P62273 56 aaKnown RBP7.28□□□□□ -1.24
SHMT2-227ENST00000557269 GTF2H5Q6ZYL4 71 aa7.28□□□□□ -1.24
SHMT2-227ENST00000557269 A0A1W2PNM2 257 aa7.27□□□□□ -1.25
SHMT2-227ENST00000557269 SMCPP49901 116 aaPredicted RBP7.27□□□□□ -1.25
SHMT2-227ENST00000557269 TRBV7-7A0A0K0K1E9 115 aa7.26□□□□□ -1.25
SHMT2-227ENST00000557269 PRO0461Q9UI25 63 aa7.26□□□□□ -1.25
SHMT2-227ENST00000557269 H3BT86 120 aa7.25□□□□□ -1.25
SHMT2-227ENST00000557269 RBM3P98179 157 aaKnown RBP7.25□□□□□ -1.25
SHMT2-227ENST00000557269 TRBV7-4A0A0J9YYF1 115 aa7.24□□□□□ -1.25
SHMT2-227ENST00000557269 PRR4Q16378 134 aa7.24□□□□□ -1.25
SHMT2-227ENST00000557269 Q6Q795 121 aa7.24□□□□□ -1.25
SHMT2-227ENST00000557269 OBSCN-AS1Q96MR7 158 aa7.24□□□□□ -1.25
SHMT2-227ENST00000557269 HMCN2Q8NDA2 5059 aa7.23□□□□□ -1.25
SHMT2-227ENST00000557269 Q5XG85 94 aa7.23□□□□□ -1.25
SHMT2-227ENST00000557269 TEN1Q86WV5 123 aa7.23□□□□□ -1.25
SHMT2-227ENST00000557269 LIMD2Q9BT23 127 aa7.23□□□□□ -1.25
SHMT2-227ENST00000557269 DSCR8Q96T75 97 aa7.22□□□□□ -1.25
SHMT2-227ENST00000557269 JMJD7-PLA2G4BH0Y9G9 81 aa7.21□□□□□ -1.26
SHMT2-227ENST00000557269 C14orf132Q9NPU4 83 aa7.21□□□□□ -1.26
SHMT2-227ENST00000557269 CCKP06307 115 aa7.2□□□□□ -1.26
SHMT2-227ENST00000557269 A0A087WSZ3 146 aa7.19□□□□□ -1.26
SHMT2-227ENST00000557269 LOC110117498A0A087WWA1 95 aa7.19□□□□□ -1.26
SHMT2-227ENST00000557269 C1orf195Q5TG92 126 aa7.19□□□□□ -1.26
SHMT2-227ENST00000557269 Q6ZQT0 140 aa7.19□□□□□ -1.26
SHMT2-227ENST00000557269 IGLV7-46A0A075B6I9 117 aa7.18□□□□□ -1.26
SHMT2-227ENST00000557269 VPS25Q9BRG1 176 aa7.18□□□□□ -1.26
SHMT2-227ENST00000557269 ASB16-AS1Q495Z4 193 aa7.16□□□□□ -1.26
SHMT2-227ENST00000557269 FP248Q71RG6 208 aaPredicted RBP7.16□□□□□ -1.26
SHMT2-227ENST00000557269 F8W1H4 67 aa7.15□□□□□ -1.26
SHMT2-227ENST00000557269 LPAP08519 4548 aa7.15□□□□□ -1.27
SHMT2-227ENST00000557269 PDE6GP18545 87 aa7.13□□□□□ -1.27
SHMT2-227ENST00000557269 Q96NJ1 140 aa7.13□□□□□ -1.27
SHMT2-227ENST00000557269 SS18L2Q9UHA2 77 aa7.12□□□□□ -1.27
SHMT2-227ENST00000557269 KRTAP13-3Q3SY46 172 aa7.11□□□□□ -1.27
SHMT2-227ENST00000557269 ETDBQ3ZM63 59 aa7.1□□□□□ -1.27
SHMT2-227ENST00000557269 TPRXLQ17RH7 258 aa7.09□□□□□ -1.27
SHMT2-227ENST00000557269 DEFB116Q30KQ4 102 aa7.08□□□□□ -1.28
SHMT2-227ENST00000557269 LINC00472Q9H8W2 130 aa7.08□□□□□ -1.28
SHMT2-227ENST00000557269 LRP2P98164 4655 aa7.06□□□□□ -1.28
SHMT2-227ENST00000557269 A0A1B0GW54 56 aa7.05□□□□□ -1.28
SHMT2-227ENST00000557269 C9orf92A6NGG3 77 aa7.05□□□□□ -1.28
SHMT2-227ENST00000557269 IGKV4-1P06312 121 aa7.03□□□□□ -1.28
SHMT2-227ENST00000557269 C21orf62-AS1Q17RA5 79 aa7.03□□□□□ -1.28
SHMT2-227ENST00000557269 CDIP1Q9H305 208 aa7.03□□□□□ -1.28
SHMT2-227ENST00000557269 SIGMAR1Q99720 223 aa7.02□□□□□ -1.29
SHMT2-227ENST00000557269 NREPQ16612 68 aa7□□□□□ -1.29
SHMT2-227ENST00000557269 XP32Q5T750 250 aa7□□□□□ -1.29
SHMT2-227ENST00000557269 LINC00846Q9NV44 126 aa6.99□□□□□ -1.29
SHMT2-227ENST00000557269 UBR4Q5T4S7 5183 aa6.99□□□□□ -1.29
SHMT2-227ENST00000557269 Q6ZVQ6 151 aa6.97□□□□□ -1.29
SHMT2-227ENST00000557269 NOTCH2NLQ7Z3S9 236 aa6.97□□□□□ -1.29
SHMT2-227ENST00000557269 J3KT08 172 aa6.96□□□□□ -1.3
SHMT2-227ENST00000557269 DSCR10P59022 87 aa6.96□□□□□ -1.3
SHMT2-227ENST00000557269 IGHV6-1A0A0B4J1U7 121 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms