RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 NISCHQ9Y2I1 1504 aa30.57■■■□□ 2.48
SHMT2-227ENST00000557269 CCDC180Q9P1Z9 1646 aa26.94■■□□□ 1.9
SHMT2-227ENST00000557269 ABCC9O60706 1549 aa26.14■■□□□ 1.77
SHMT2-227ENST00000557269 ZCCHC6Q5VYS8 1495 aaKnown RBP25.53■■□□□ 1.68
SHMT2-227ENST00000557269 DCAF8L2P0C7V8 631 aa25.45■■□□□ 1.66
SHMT2-227ENST00000557269 NACADO15069 1562 aa25.27■■□□□ 1.64
SHMT2-227ENST00000557269 DCAF1Q9Y4B6 1507 aa25.26■■□□□ 1.63
SHMT2-227ENST00000557269 MYO15BQ96JP2 1530 aa25.22■■□□□ 1.63
SHMT2-227ENST00000557269 RB1CC1Q8TDY2 1594 aa25.21■■□□□ 1.63
SHMT2-227ENST00000557269 SCRIBQ14160 1630 aa24.7■■□□□ 1.54
SHMT2-227ENST00000557269 UNC13AQ9UPW8 1703 aa24.69■■□□□ 1.54
SHMT2-227ENST00000557269 PABPN1Q86U42 306 aaKnown RBP eCLIP24.53■■□□□ 1.52
SHMT2-227ENST00000557269 BICRAQ9NZM4 1560 aa24.51■■□□□ 1.51
SHMT2-227ENST00000557269 SHROOM4Q9ULL8 1493 aa24.45■■□□□ 1.5
SHMT2-227ENST00000557269 CECR2Q9BXF3 1484 aa23.84■■□□□ 1.41
SHMT2-227ENST00000557269 EIF4G1Q04637 1599 aaKnown RBP23.8■■□□□ 1.4
SHMT2-227ENST00000557269 DNAJC5BQ9UF47 199 aa23.76■■□□□ 1.39
SHMT2-227ENST00000557269 SMARCA4P51532 1647 aa23.63■■□□□ 1.37
SHMT2-227ENST00000557269 CC2D2AQ9P2K1 1620 aa23.63■■□□□ 1.37
SHMT2-227ENST00000557269 BAZ1AQ9NRL2 1556 aaPredicted RBP23.63■■□□□ 1.37
SHMT2-227ENST00000557269 MROH2BQ7Z745 1585 aa23.61■■□□□ 1.37
SHMT2-227ENST00000557269 RSF1Q96T23 1441 aaPredicted RBP23.46■■□□□ 1.35
SHMT2-227ENST00000557269 ATAD2BQ9ULI0 1458 aa23.43■■□□□ 1.34
SHMT2-227ENST00000557269 PEG3Q9GZU2 1588 aa23.37■■□□□ 1.33
SHMT2-227ENST00000557269 SMARCA2P51531 1590 aa23.36■■□□□ 1.33
SHMT2-227ENST00000557269 WIZO95785 1651 aa23.36■■□□□ 1.33
SHMT2-227ENST00000557269 NCAPD3P42695 1498 aa23.35■■□□□ 1.33
SHMT2-227ENST00000557269 BAZ1BQ9UIG0 1483 aaKnown RBP23.24■■□□□ 1.31
SHMT2-227ENST00000557269 HMGXB3Q12766 1538 aa23.23■■□□□ 1.31
SHMT2-227ENST00000557269 SUPT5HO00267 1087 aaKnown RBP23.16■■□□□ 1.3
SHMT2-227ENST00000557269 TOP2AP11388 1531 aaKnown RBP23.09■■□□□ 1.29
SHMT2-227ENST00000557269 CCDC88BA6NC98 1476 aa22.86■■□□□ 1.25
SHMT2-227ENST00000557269 NESP48681 1621 aa22.75■■□□□ 1.23
SHMT2-227ENST00000557269 CADPSQ9ULU8 1353 aa22.69■■□□□ 1.22
SHMT2-227ENST00000557269 LAMC3Q9Y6N6 1575 aa22.63■■□□□ 1.21
SHMT2-227ENST00000557269 CFTRP13569 1480 aa22.63■■□□□ 1.21
SHMT2-227ENST00000557269 PDS5BQ9NTI5 1447 aa22.48■■□□□ 1.19
SHMT2-227ENST00000557269 ERCC6Q03468 1493 aa22.44■■□□□ 1.18
SHMT2-227ENST00000557269 FANCD2Q9BXW9 1451 aa22.44■■□□□ 1.18
SHMT2-227ENST00000557269 KIF21AQ7Z4S6 1674 aa22.43■■□□□ 1.18
SHMT2-227ENST00000557269 PRDM2Q13029 1718 aa22.43■■□□□ 1.18
SHMT2-227ENST00000557269 CEP164Q9UPV0 1460 aa22.34■■□□□ 1.17
SHMT2-227ENST00000557269 THOC2Q8NI27 1593 aaKnown RBP22.26■■□□□ 1.15
SHMT2-227ENST00000557269 MRC2Q9UBG0 1479 aa22.26■■□□□ 1.15
SHMT2-227ENST00000557269 URB2Q14146 1524 aaKnown RBP22.21■■□□□ 1.15
SHMT2-227ENST00000557269 WDR62O43379 1518 aa22.17■■□□□ 1.14
SHMT2-227ENST00000557269 ABCC8Q09428 1581 aa22.15■■□□□ 1.14
SHMT2-227ENST00000557269 TOPBP1Q92547 1522 aa22.12■■□□□ 1.13
SHMT2-227ENST00000557269 CUX1P39880 1505 aa22.11■■□□□ 1.13
SHMT2-227ENST00000557269 DNMBPQ6XZF7 1577 aa22.1■■□□□ 1.13
SHMT2-227ENST00000557269 WRNQ14191 1432 aaPredicted RBP eCLIP22.07■■□□□ 1.12
SHMT2-227ENST00000557269 CUX2O14529 1486 aa22.05■■□□□ 1.12
SHMT2-227ENST00000557269 SYNJ1O43426 1573 aa22.04■■□□□ 1.12
SHMT2-227ENST00000557269 TOP2BQ02880 1626 aa21.97■■□□□ 1.11
SHMT2-227ENST00000557269 FGD5Q6ZNL6 1462 aa21.96■■□□□ 1.11
SHMT2-227ENST00000557269 BIVM-ERCC5R4GMW8 1640 aa21.96■■□□□ 1.11
SHMT2-227ENST00000557269 POLA1P09884 1462 aaPredicted RBP21.96■■□□□ 1.11
SHMT2-227ENST00000557269 RAD54L2Q9Y4B4 1467 aa21.9■■□□□ 1.1
SHMT2-227ENST00000557269 SOGA1O94964 1423 aa21.89■■□□□ 1.09
SHMT2-227ENST00000557269 IFT140Q96RY7 1462 aa21.86■■□□□ 1.09
SHMT2-227ENST00000557269 TARBP1Q13395 1621 aaKnown RBP21.86■■□□□ 1.09
SHMT2-227ENST00000557269 CHIC1Q5VXU3 224 aa21.83■■□□□ 1.09
SHMT2-227ENST00000557269 ZNF608Q9ULD9 1512 aaPredicted RBP21.81■■□□□ 1.08
SHMT2-227ENST00000557269 TRIM41Q8WV44 630 aa21.81■■□□□ 1.08
SHMT2-227ENST00000557269 ABCA10Q8WWZ4 1543 aa21.75■■□□□ 1.07
SHMT2-227ENST00000557269 TDRD9Q8NDG6 1382 aaKnown RBP21.74■■□□□ 1.07
SHMT2-227ENST00000557269 WDR97A6NE52 1622 aa21.74■■□□□ 1.07
SHMT2-227ENST00000557269 AQRO60306 1485 aaKnown RBP eCLIP21.73■■□□□ 1.075e-7■■■■□ 23.4
SHMT2-227ENST00000557269 EIF4G3O43432 1585 aaKnown RBP21.68■■□□□ 1.06
SHMT2-227ENST00000557269 ABCA5Q8WWZ7 1642 aa21.63■■□□□ 1.05
SHMT2-227ENST00000557269 GAPVD1Q14C86 1478 aa21.62■■□□□ 1.05
SHMT2-227ENST00000557269 RUSC2Q8N2Y8 1516 aa21.59■■□□□ 1.05
SHMT2-227ENST00000557269 KIF27Q86VH2 1401 aa21.56■■□□□ 1.04
SHMT2-227ENST00000557269 GRIN2BQ13224 1484 aa21.55■■□□□ 1.04
SHMT2-227ENST00000557269 PBRM1Q86U86 1689 aa21.53■■□□□ 1.04
SHMT2-227ENST00000557269 SNAPC4Q5SXM2 1469 aa21.51■■□□□ 1.03
SHMT2-227ENST00000557269 IGF1RP08069 1367 aa21.48■■□□□ 1.03
SHMT2-227ENST00000557269 ERICH3Q5RHP9 1530 aa21.46■■□□□ 1.03
SHMT2-227ENST00000557269 MAGI1Q96QZ7 1491 aaPredicted RBP21.44■■□□□ 1.02
SHMT2-227ENST00000557269 FAM9AQ8IZU1 332 aaPredicted RBP21.42■■□□□ 1.02
SHMT2-227ENST00000557269 ADAMTS12P58397 1594 aa21.4■■□□□ 1.02
SHMT2-227ENST00000557269 FBLN2P98095 1184 aa21.38■■□□□ 1.01
SHMT2-227ENST00000557269 SYNJ2O15056 1496 aa21.38■■□□□ 1.01
SHMT2-227ENST00000557269 FHAD1B1AJZ9 1412 aa21.37■■□□□ 1.01
SHMT2-227ENST00000557269 CHMP7Q8WUX9 453 aaPredicted RBP21.35■■□□□ 1.01
SHMT2-227ENST00000557269 CSRNP3Q8WYN3 585 aa21.35■■□□□ 1.01
SHMT2-227ENST00000557269 EEA1Q15075 1411 aa21.35■■□□□ 1.01
SHMT2-227ENST00000557269 CHD1O14646 1710 aa21.35■■□□□ 1.01
SHMT2-227ENST00000557269 CARMIL1Q5VZK9 1371 aa21.34■■□□□ 1.01
SHMT2-227ENST00000557269 CUL7Q14999 1698 aa21.32■■□□□ 1
SHMT2-227ENST00000557269 GRIN2AQ12879 1464 aa21.29■■□□□ 1
SHMT2-227ENST00000557269 PRXQ9BXM0 1461 aa21.27■■□□□ 1
SHMT2-227ENST00000557269 OSCARQ8IYS5 282 aa21.24■□□□□ 0.99
SHMT2-227ENST00000557269 RAPGEF2Q9Y4G8 1499 aa21.23■□□□□ 0.99
SHMT2-227ENST00000557269 CEP170Q5SW79 1584 aa21.19■□□□□ 0.98
SHMT2-227ENST00000557269 NUP160Q12769 1436 aa21.19■□□□□ 0.98
SHMT2-227ENST00000557269 EHMT2Q96KQ7 1210 aa21.15■□□□□ 0.98
SHMT2-227ENST00000557269 KIF21BO75037 1637 aa21.14■□□□□ 0.97
SHMT2-227ENST00000557269 CLASP1Q7Z460 1538 aa21.13■□□□□ 0.97
SHMT2-227ENST00000557269 KIAA0586Q9BVV6 1533 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms