RNA–Protein interactions for RNA: ENST00000555402.1

VRK1-205, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 415 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-205ENST00000555402 IGIPA6NJ69 53 aa0.79□□□□□ -2.28
VRK1-205ENST00000555402 FASNP49327 2511 aaKnown RBP0.79□□□□□ -2.28
VRK1-205ENST00000555402 AGLP35573 1532 aa0.79□□□□□ -2.28
VRK1-205ENST00000555402 F8P00451 2351 aa0.78□□□□□ -2.28
VRK1-205ENST00000555402 A0A0C4DFX4 3053 aa0.78□□□□□ -2.28
VRK1-205ENST00000555402 BDP1A6H8Y1 2624 aa0.78□□□□□ -2.28
VRK1-205ENST00000555402 USP24Q9UPU5 2620 aa0.78□□□□□ -2.28
VRK1-205ENST00000555402 MINOS1Q5TGZ0 78 aa0.78□□□□□ -2.28
VRK1-205ENST00000555402 SPTBN1Q01082 2364 aaKnown RBP0.78□□□□□ -2.28
VRK1-205ENST00000555402 PTPN13Q12923 2485 aa0.77□□□□□ -2.29
VRK1-205ENST00000555402 EPG5Q9HCE0 2579 aa0.77□□□□□ -2.29
VRK1-205ENST00000555402 PCNTO95613 3336 aa0.77□□□□□ -2.29
VRK1-205ENST00000555402 EFCAB6Q5THR3 1501 aa0.77□□□□□ -2.29
VRK1-205ENST00000555402 CEP250Q9BV73 2442 aa0.77□□□□□ -2.29
VRK1-205ENST00000555402 CHD6Q8TD26 2715 aa0.76□□□□□ -2.29
VRK1-205ENST00000555402 ABCA2Q9BZC7 2435 aa0.76□□□□□ -2.29
VRK1-205ENST00000555402 A0A1B0GUL6 1792 aa0.76□□□□□ -2.29
VRK1-205ENST00000555402 DEFB130BP0DP73 79 aa0.76□□□□□ -2.29
VRK1-205ENST00000555402 DEFB130AP0DP74 79 aa0.76□□□□□ -2.29
VRK1-205ENST00000555402 U3KQA8 63 aa0.76□□□□□ -2.29
VRK1-205ENST00000555402 PKDREJQ9NTG1 2253 aa0.75□□□□□ -2.29
VRK1-205ENST00000555402 SNRPGP15A8MWD9 76 aa0.75□□□□□ -2.29
VRK1-205ENST00000555402 TNRC18O15417 2968 aaPredicted RBP0.75□□□□□ -2.29
VRK1-205ENST00000555402 GCN1Q92616 2671 aaKnown RBP0.74□□□□□ -2.29
VRK1-205ENST00000555402 MYO18BQ8IUG5 2567 aa0.74□□□□□ -2.29
VRK1-205ENST00000555402 MAP1BP46821 2468 aaKnown RBP0.74□□□□□ -2.29
VRK1-205ENST00000555402 C6orf48Q9UBA6 75 aa0.74□□□□□ -2.29
VRK1-205ENST00000555402 PIEZO1Q92508 2521 aa0.74□□□□□ -2.29
VRK1-205ENST00000555402 TPRP12270 2363 aaKnown RBP0.74□□□□□ -2.29
VRK1-205ENST00000555402 CELSR2Q9HCU4 2923 aa0.73□□□□□ -2.29
VRK1-205ENST00000555402 PLNP26678 52 aa0.73□□□□□ -2.29
VRK1-205ENST00000555402 KIF21BO75037 1637 aa0.73□□□□□ -2.29
VRK1-205ENST00000555402 ANKHD1Q8IWZ3 2542 aaKnown RBP0.72□□□□□ -2.29
VRK1-205ENST00000555402 ZNF292O60281 2723 aa0.72□□□□□ -2.29
VRK1-205ENST00000555402 CFAP46Q8IYW2 2715 aa0.72□□□□□ -2.29
VRK1-205ENST00000555402 CMC2Q9NRP2 79 aa0.72□□□□□ -2.29
VRK1-205ENST00000555402 LRRK2Q5S007 2527 aa0.72□□□□□ -2.29
VRK1-205ENST00000555402 IQGAP1P46940 1657 aa0.72□□□□□ -2.29
VRK1-205ENST00000555402 SPTBN4Q9H254 2564 aa0.71□□□□□ -2.3
VRK1-205ENST00000555402 KRTAP21-1Q3LI58 79 aa0.71□□□□□ -2.3
VRK1-205ENST00000555402 GVINP1Q7Z2Y8 2422 aa0.71□□□□□ -2.3
VRK1-205ENST00000555402 LMO7Q8WWI1 1683 aa0.71□□□□□ -2.3
VRK1-205ENST00000555402 KALRNO60229 2985 aa0.71□□□□□ -2.3
VRK1-205ENST00000555402 SPTAN1Q13813 2472 aaKnown RBP0.71□□□□□ -2.3
VRK1-205ENST00000555402 VCANP13611 3396 aa0.7□□□□□ -2.3
VRK1-205ENST00000555402 CEP290O15078 2479 aa0.7□□□□□ -2.3
VRK1-205ENST00000555402 RPS27P42677 84 aaKnown RBP0.7□□□□□ -2.3
VRK1-205ENST00000555402 RPS27LQ71UM5 84 aaKnown RBP0.7□□□□□ -2.3
VRK1-205ENST00000555402 TMEM167BQ9NRX6 74 aa0.7□□□□□ -2.3
VRK1-205ENST00000555402 SPG11Q96JI7 2443 aa0.7□□□□□ -2.3
VRK1-205ENST00000555402 SETD2Q9BYW2 2564 aaPredicted RBP0.7□□□□□ -2.3
VRK1-205ENST00000555402 IQGAP2Q13576 1575 aa0.7□□□□□ -2.3
VRK1-205ENST00000555402 APCP25054 2843 aa0.7□□□□□ -2.3
VRK1-205ENST00000555402 COL6A3P12111 3177 aa0.69□□□□□ -2.3
VRK1-205ENST00000555402 AKAP6Q13023 2319 aa0.69□□□□□ -2.3
VRK1-205ENST00000555402 H0YGX0 51 aa0.69□□□□□ -2.3
VRK1-205ENST00000555402 M0R2T5 61 aa0.69□□□□□ -2.3
VRK1-205ENST00000555402 DEFB135Q30KP9 77 aa0.69□□□□□ -2.3
VRK1-205ENST00000555402 NBEAL2Q6ZNJ1 2754 aa0.69□□□□□ -2.3
VRK1-205ENST00000555402 UTRNP46939 3433 aa0.69□□□□□ -2.3
VRK1-205ENST00000555402 ZFYVE26Q68DK2 2539 aa0.69□□□□□ -2.3
VRK1-205ENST00000555402 CFAP47Q6ZTR5 3102 aa0.69□□□□□ -2.3
VRK1-205ENST00000555402 ACACBO00763 2458 aa0.69□□□□□ -2.3
VRK1-205ENST00000555402 CCDC168Q8NDH2 2452 aa0.69□□□□□ -2.3
VRK1-205ENST00000555402 SZT2Q5T011 3432 aa0.68□□□□□ -2.3
VRK1-205ENST00000555402 CREBBPQ92793 2442 aa0.68□□□□□ -2.3
VRK1-205ENST00000555402 KNL1Q8NG31 2342 aa0.68□□□□□ -2.3
VRK1-205ENST00000555402 LAMA2P24043 3122 aaKnown RBP0.68□□□□□ -2.3
VRK1-205ENST00000555402 COL6A5A8TX70 2615 aa0.68□□□□□ -2.3
VRK1-205ENST00000555402 UNC80Q8N2C7 3258 aa0.67□□□□□ -2.3
VRK1-205ENST00000555402 STAB1Q9NY15 2570 aa0.67□□□□□ -2.3
VRK1-205ENST00000555402 DDX60Q8IY21 1712 aaKnown RBP0.67□□□□□ -2.3
VRK1-205ENST00000555402 WNK2Q9Y3S1 2297 aa0.67□□□□□ -2.3
VRK1-205ENST00000555402 NBEAL1Q6ZS30 2694 aa0.67□□□□□ -2.3
VRK1-205ENST00000555402 NCOR2Q9Y618 2525 aa0.67□□□□□ -2.3
VRK1-205ENST00000555402 FLNAP21333 2647 aaKnown RBP0.67□□□□□ -2.3
VRK1-205ENST00000555402 ATRQ13535 2644 aa0.67□□□□□ -2.3
VRK1-205ENST00000555402 BPTFQ12830 3046 aa0.67□□□□□ -2.3
VRK1-205ENST00000555402 LINC00308Q8TCZ7 52 aa0.67□□□□□ -2.3
VRK1-205ENST00000555402 FLNCQ14315 2725 aa0.67□□□□□ -2.3
VRK1-205ENST00000555402 RANBP2P49792 3224 aaKnown RBP0.67□□□□□ -2.3
VRK1-205ENST00000555402 CSMD3Q7Z407 3707 aa0.67□□□□□ -2.3
VRK1-205ENST00000555402 TLN1Q9Y490 2541 aaKnown RBP0.67□□□□□ -2.3
VRK1-205ENST00000555402 ZFHX4Q86UP3 3567 aa0.66□□□□□ -2.3
VRK1-205ENST00000555402 DNAH12Q6ZR08 3092 aa0.66□□□□□ -2.3
VRK1-205ENST00000555402 GOLGB1Q14789 3259 aaKnown RBP0.66□□□□□ -2.3
VRK1-205ENST00000555402 EP300Q09472 2414 aaPredicted RBP0.66□□□□□ -2.3
VRK1-205ENST00000555402 FAM208AQ9UK61 1670 aaKnown RBP0.65□□□□□ -2.3
VRK1-205ENST00000555402 VWFP04275 2813 aa0.65□□□□□ -2.3
VRK1-205ENST00000555402 REV3LO60673 3130 aa0.65□□□□□ -2.3
VRK1-205ENST00000555402 PCNX1Q96RV3 2341 aa0.65□□□□□ -2.3
VRK1-205ENST00000555402 MTORP42345 2549 aa0.65□□□□□ -2.31
VRK1-205ENST00000555402 PRM1P04553 51 aa0.65□□□□□ -2.31
VRK1-205ENST00000555402 DEFB106AQ8N104 65 aa0.65□□□□□ -2.31
VRK1-205ENST00000555402 TEX15Q9BXT5 2789 aa0.65□□□□□ -2.31
VRK1-205ENST00000555402 AHNAKQ09666 5890 aaKnown RBP0.65□□□□□ -2.31
VRK1-205ENST00000555402 MKI67P46013 3256 aaKnown RBP0.64□□□□□ -2.31
VRK1-205ENST00000555402 ANK2Q01484 3957 aa0.64□□□□□ -2.31
VRK1-205ENST00000555402 NCOR1O75376 2440 aa0.64□□□□□ -2.31
VRK1-205ENST00000555402 IGSF10Q6WRI0 2623 aa0.64□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 127.8 ms