RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 SPACA4Q8TDM5 124 aa3.63□□□□□ -1.83
VPS50-220ENST00000544910 ABCA12Q86UK0 2595 aa3.63□□□□□ -1.83
VPS50-220ENST00000544910 Q8N9P0 234 aaPredicted RBP3.63□□□□□ -1.83
VPS50-220ENST00000544910 LRRK2Q5S007 2527 aa3.63□□□□□ -1.83
VPS50-220ENST00000544910 ZNF861PO60384 105 aa3.62□□□□□ -1.83
VPS50-220ENST00000544910 FAM229BQ4G0N7 80 aa3.62□□□□□ -1.83
VPS50-220ENST00000544910 MYO9AB2RTY4 2548 aa3.62□□□□□ -1.83
VPS50-220ENST00000544910 LAMA5O15230 3695 aa3.62□□□□□ -1.83
VPS50-220ENST00000544910 NOTCH2Q04721 2471 aa3.61□□□□□ -1.83
VPS50-220ENST00000544910 KRTAP4-16G5E9R7 235 aaPredicted RBP3.61□□□□□ -1.83
VPS50-220ENST00000544910 Q5VV11 94 aa3.6□□□□□ -1.83
VPS50-220ENST00000544910 PSORS1C2Q9UIG4 136 aa3.6□□□□□ -1.83
VPS50-220ENST00000544910 Q96NJ1 140 aa3.6□□□□□ -1.83
VPS50-220ENST00000544910 OXTP01178 125 aa3.6□□□□□ -1.83
VPS50-220ENST00000544910 KRTAP1-5Q9BYS1 174 aa3.6□□□□□ -1.83
VPS50-220ENST00000544910 FLNAP21333 2647 aaKnown RBP3.6□□□□□ -1.83
VPS50-220ENST00000544910 TNP2Q05952 138 aa3.6□□□□□ -1.83
VPS50-220ENST00000544910 IGSF10Q6WRI0 2623 aa3.6□□□□□ -1.83
VPS50-220ENST00000544910 FN1P02751 2386 aaKnown RBP3.59□□□□□ -1.83
VPS50-220ENST00000544910 ASB16-AS1Q495Z4 193 aa3.59□□□□□ -1.83
VPS50-220ENST00000544910 IGLV7-43P04211 117 aa3.59□□□□□ -1.83
VPS50-220ENST00000544910 ITPR3Q14573 2671 aa3.59□□□□□ -1.83
VPS50-220ENST00000544910 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.59□□□□□ -1.84
VPS50-220ENST00000544910 KALRNO60229 2985 aa3.58□□□□□ -1.84
VPS50-220ENST00000544910 USP24Q9UPU5 2620 aa3.58□□□□□ -1.84
VPS50-220ENST00000544910 DCHS1Q96JQ0 3298 aa3.58□□□□□ -1.84
VPS50-220ENST00000544910 SPRR1BP22528 89 aa3.58□□□□□ -1.84
VPS50-220ENST00000544910 MUC3AQ02505 3323 aa3.58□□□□□ -1.84
VPS50-220ENST00000544910 ANAPC11Q9NYG5 84 aa3.58□□□□□ -1.84
VPS50-220ENST00000544910 WWC2-AS2Q96NR7 200 aa3.58□□□□□ -1.84
VPS50-220ENST00000544910 FASNP49327 2511 aaKnown RBP3.57□□□□□ -1.84
VPS50-220ENST00000544910 TYMSOSQ8TAI1 123 aa3.57□□□□□ -1.84
VPS50-220ENST00000544910 ACANP16112 2415 aa3.57□□□□□ -1.84
VPS50-220ENST00000544910 CFAP47Q6ZTR5 3102 aa3.57□□□□□ -1.84
VPS50-220ENST00000544910 ZFYVE26Q68DK2 2539 aa3.56□□□□□ -1.84
VPS50-220ENST00000544910 PRR26Q8N8Z3 221 aa3.56□□□□□ -1.84
VPS50-220ENST00000544910 CSMD1Q96PZ7 3565 aa3.56□□□□□ -1.84
VPS50-220ENST00000544910 PLAC8Q9NZF1 115 aa3.55□□□□□ -1.84
VPS50-220ENST00000544910 RELNP78509 3460 aa3.55□□□□□ -1.84
VPS50-220ENST00000544910 MMP24-AS1A0A0U1RRL7 71 aa3.55□□□□□ -1.84
VPS50-220ENST00000544910 KRTAP7-1Q8IUC3 87 aa3.55□□□□□ -1.84
VPS50-220ENST00000544910 TACC2O95359 2948 aa3.54□□□□□ -1.84
VPS50-220ENST00000544910 LUZP6Q538Z0 58 aa3.54□□□□□ -1.84
VPS50-220ENST00000544910 DMAC1Q96GE9 116 aa3.54□□□□□ -1.84
VPS50-220ENST00000544910 EPG5Q9HCE0 2579 aa3.54□□□□□ -1.84
VPS50-220ENST00000544910 LINC00472Q9H8W2 130 aa3.54□□□□□ -1.84
VPS50-220ENST00000544910 MTORP42345 2549 aa3.54□□□□□ -1.84
VPS50-220ENST00000544910 PRAC1Q96KF2 57 aa3.53□□□□□ -1.84
VPS50-220ENST00000544910 ANK3Q12955 4377 aaKnown RBP3.53□□□□□ -1.84
VPS50-220ENST00000544910 PLA2G1BP04054 148 aaKnown RBP3.53□□□□□ -1.84
VPS50-220ENST00000544910 LINC00483Q53H64 154 aa3.53□□□□□ -1.85
VPS50-220ENST00000544910 JMJD1CQ15652 2540 aa3.52□□□□□ -1.85
VPS50-220ENST00000544910 A0A1B0GU33 70 aa3.52□□□□□ -1.85
VPS50-220ENST00000544910 HRES1P13985 223 aa3.52□□□□□ -1.85
VPS50-220ENST00000544910 UTP20O75691 2785 aaKnown RBP3.52□□□□□ -1.85
VPS50-220ENST00000544910 CSAG1Q6PB30 78 aa3.51□□□□□ -1.85
VPS50-220ENST00000544910 TEX15Q9BXT5 2789 aa3.51□□□□□ -1.85
VPS50-220ENST00000544910 CHD6Q8TD26 2715 aa3.51□□□□□ -1.85
VPS50-220ENST00000544910 SETD2Q9BYW2 2564 aaPredicted RBP3.51□□□□□ -1.85
VPS50-220ENST00000544910 SPINK7P58062 85 aa3.51□□□□□ -1.85
VPS50-220ENST00000544910 UBR5O95071 2799 aaPredicted RBP3.51□□□□□ -1.85
VPS50-220ENST00000544910 DCHS2Q6V1P9 2916 aa3.5□□□□□ -1.85
VPS50-220ENST00000544910 ITPR1Q14643 2758 aa3.49□□□□□ -1.85
VPS50-220ENST00000544910 PANO1I0J062 215 aa3.49□□□□□ -1.85
VPS50-220ENST00000544910 LINC00304Q8N9R0 145 aa3.49□□□□□ -1.85
VPS50-220ENST00000544910 KRTAP11-1Q8IUC1 163 aa3.49□□□□□ -1.85
VPS50-220ENST00000544910 A0A0A0MQY5 61 aa3.49□□□□□ -1.85
VPS50-220ENST00000544910 KRTAP29-1A8MX34 341 aaPredicted RBP3.48□□□□□ -1.85
VPS50-220ENST00000544910 COL12A1Q99715 3063 aa3.48□□□□□ -1.85
VPS50-220ENST00000544910 Q6ZRN7 208 aaPredicted RBP3.48□□□□□ -1.85
VPS50-220ENST00000544910 LCE6AA0A183 80 aa3.47□□□□□ -1.85
VPS50-220ENST00000544910 ZCCHC13Q8WW36 166 aaKnown RBP3.47□□□□□ -1.85
VPS50-220ENST00000544910 Q8N1X5 172 aa3.47□□□□□ -1.85
VPS50-220ENST00000544910 FBN2P35556 2912 aa3.46□□□□□ -1.85
VPS50-220ENST00000544910 SVEP1Q4LDE5 3571 aa3.46□□□□□ -1.86
VPS50-220ENST00000544910 A0A0D9SG42 100 aa3.46□□□□□ -1.86
VPS50-220ENST00000544910 A6NN06 94 aa3.45□□□□□ -1.86
VPS50-220ENST00000544910 Q6ZR54 194 aa3.45□□□□□ -1.86
VPS50-220ENST00000544910 HECTD1Q9ULT8 2610 aa3.45□□□□□ -1.86
VPS50-220ENST00000544910 KRTAP13-1Q8IUC0 172 aa3.45□□□□□ -1.86
VPS50-220ENST00000544910 AKAP9Q99996 3911 aa3.45□□□□□ -1.86
VPS50-220ENST00000544910 CFAP46Q8IYW2 2715 aa3.45□□□□□ -1.86
VPS50-220ENST00000544910 ZFHX3Q15911 3703 aa3.44□□□□□ -1.86
VPS50-220ENST00000544910 F8P00451 2351 aa3.44□□□□□ -1.86
VPS50-220ENST00000544910 FLNCQ14315 2725 aa3.44□□□□□ -1.86
VPS50-220ENST00000544910 APCP25054 2843 aa3.44□□□□□ -1.86
VPS50-220ENST00000544910 C9orf92A6NGG3 77 aa3.43□□□□□ -1.86
VPS50-220ENST00000544910 A0A087X002 238 aa3.43□□□□□ -1.86
VPS50-220ENST00000544910 SETXQ7Z333 2677 aaKnown RBP3.43□□□□□ -1.86
VPS50-220ENST00000544910 SMR3BP02814 79 aaPredicted RBP3.42□□□□□ -1.86
VPS50-220ENST00000544910 KRTAP10-2P60368 255 aa3.42□□□□□ -1.86
VPS50-220ENST00000544910 SPATA8Q6RVD6 105 aa3.42□□□□□ -1.86
VPS50-220ENST00000544910 ROMO1P60602 79 aa3.42□□□□□ -1.86
VPS50-220ENST00000544910 Q5W150 140 aa3.42□□□□□ -1.86
VPS50-220ENST00000544910 VPS13CQ709C8 3753 aa3.41□□□□□ -1.86
VPS50-220ENST00000544910 GCN1Q92616 2671 aaKnown RBP3.41□□□□□ -1.86
VPS50-220ENST00000544910 HELZ2Q9BYK8 2649 aaKnown RBP3.41□□□□□ -1.86
VPS50-220ENST00000544910 UNC79Q9P2D8 2635 aa3.41□□□□□ -1.86
VPS50-220ENST00000544910 KRTAP10-1P60331 282 aa3.41□□□□□ -1.86
VPS50-220ENST00000544910 CENPEQ02224 2701 aa3.4□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 99.2 ms