RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 CSAG1Q6PB30 78 aa12.22□□□□□ -0.45
HDAC4-215ENST00000543185 PCNTO95613 3336 aa12.22□□□□□ -0.45
HDAC4-215ENST00000543185 UTP20O75691 2785 aaKnown RBP12.22□□□□□ -0.45
HDAC4-215ENST00000543185 ZNF575Q86XF7 245 aa12.21□□□□□ -0.45
HDAC4-215ENST00000543185 GOLGB1Q14789 3259 aaKnown RBP12.2□□□□□ -0.46
HDAC4-215ENST00000543185 KRTAP10-11P60412 298 aa12.19□□□□□ -0.46
HDAC4-215ENST00000543185 CFAP54Q96N23 3096 aa12.18□□□□□ -0.46
HDAC4-215ENST00000543185 ITPR1Q14643 2758 aa12.16□□□□□ -0.46
HDAC4-215ENST00000543185 NBEAL2Q6ZNJ1 2754 aa12.16□□□□□ -0.46
HDAC4-215ENST00000543185 ANAPC11Q9NYG5 84 aa12.16□□□□□ -0.46
HDAC4-215ENST00000543185 K7EIL1 84 aa12.16□□□□□ -0.46
HDAC4-215ENST00000543185 Q6ZSA8 131 aa12.15□□□□□ -0.46
HDAC4-215ENST00000543185 S4R3F8 94 aa12.14□□□□□ -0.47
HDAC4-215ENST00000543185 NSD1Q96L73 2696 aaPredicted RBP12.13□□□□□ -0.47
HDAC4-215ENST00000543185 MMP24-AS1A0A0U1RRL7 71 aa12.13□□□□□ -0.47
HDAC4-215ENST00000543185 ZCCHC13Q8WW36 166 aaKnown RBP12.12□□□□□ -0.47
HDAC4-215ENST00000543185 ROMO1P60602 79 aa12.12□□□□□ -0.47
HDAC4-215ENST00000543185 A0A096LNT2 108 aa12.09□□□□□ -0.47
HDAC4-215ENST00000543185 A0A0C4DFX4 3053 aa12.08□□□□□ -0.48
HDAC4-215ENST00000543185 SPINK7P58062 85 aa12.07□□□□□ -0.48
HDAC4-215ENST00000543185 PRAC1Q96KF2 57 aa12.07□□□□□ -0.48
HDAC4-215ENST00000543185 C5orf42Q9H799 3197 aa12.06□□□□□ -0.48
HDAC4-215ENST00000543185 LINC00472Q9H8W2 130 aa12.02□□□□□ -0.49
HDAC4-215ENST00000543185 RPL37P61927 97 aaKnown RBP12.01□□□□□ -0.49
HDAC4-215ENST00000543185 SPRR1AP35321 89 aa12.01□□□□□ -0.49
HDAC4-215ENST00000543185 Q5W150 140 aa12.01□□□□□ -0.49
HDAC4-215ENST00000543185 CYSTM1Q9H1C7 97 aa11.99□□□□□ -0.49
HDAC4-215ENST00000543185 R4GN34 69 aa11.96□□□□□ -0.49
HDAC4-215ENST00000543185 SPRR1BP22528 89 aa11.94□□□□□ -0.5
HDAC4-215ENST00000543185 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.94□□□□□ -0.5
HDAC4-215ENST00000543185 IGSF10Q6WRI0 2623 aa11.93□□□□□ -0.5
HDAC4-215ENST00000543185 UBR5O95071 2799 aaPredicted RBP11.92□□□□□ -0.5
HDAC4-215ENST00000543185 CASC10Q5T4H9 136 aa11.92□□□□□ -0.5
HDAC4-215ENST00000543185 TRANK1O15050 2925 aa11.92□□□□□ -0.5
HDAC4-215ENST00000543185 KRTAP16-1A8MUX0 517 aa11.91□□□□□ -0.5
HDAC4-215ENST00000543185 Q6ZR54 194 aa11.91□□□□□ -0.5
HDAC4-215ENST00000543185 UTRNP46939 3433 aa11.88□□□□□ -0.51
HDAC4-215ENST00000543185 SMR3BP02814 79 aaPredicted RBP11.88□□□□□ -0.51
HDAC4-215ENST00000543185 PLAC8Q9NZF1 115 aa11.88□□□□□ -0.51
HDAC4-215ENST00000543185 LAMA2P24043 3122 aaKnown RBP11.88□□□□□ -0.51
HDAC4-215ENST00000543185 H1FX-AS1Q4G0G2 97 aa11.86□□□□□ -0.51
HDAC4-215ENST00000543185 DSPP15924 2871 aaKnown RBP11.82□□□□□ -0.52
HDAC4-215ENST00000543185 KRTAP10-3P60369 221 aa11.78□□□□□ -0.52
HDAC4-215ENST00000543185 MGAQ8IWI9 3026 aa11.78□□□□□ -0.52
HDAC4-215ENST00000543185 M0R2T5 61 aa11.77□□□□□ -0.52
HDAC4-215ENST00000543185 OXTP01178 125 aa11.77□□□□□ -0.53
HDAC4-215ENST00000543185 LRBAP50851 2863 aa11.76□□□□□ -0.53
HDAC4-215ENST00000543185 SPATA8Q6RVD6 105 aa11.73□□□□□ -0.53
HDAC4-215ENST00000543185 A0A087X002 238 aa11.7□□□□□ -0.54
HDAC4-215ENST00000543185 FRYQ5TBA9 3013 aa11.7□□□□□ -0.54
HDAC4-215ENST00000543185 SEC61BP60468 96 aaKnown RBP11.69□□□□□ -0.54
HDAC4-215ENST00000543185 KRTAP26-1Q6PEX3 210 aa11.67□□□□□ -0.54
HDAC4-215ENST00000543185 FRYLO94915 3013 aa11.65□□□□□ -0.54
HDAC4-215ENST00000543185 Q8NDZ9 215 aa11.62□□□□□ -0.55
HDAC4-215ENST00000543185 M0QZ58 72 aa11.62□□□□□ -0.55
HDAC4-215ENST00000543185 PANO1I0J062 215 aa11.61□□□□□ -0.55
HDAC4-215ENST00000543185 A6NN06 94 aa11.6□□□□□ -0.55
HDAC4-215ENST00000543185 KRTAP25-1Q3LHN0 102 aa11.59□□□□□ -0.55
HDAC4-215ENST00000543185 VPS13AQ96RL7 3174 aa11.58□□□□□ -0.56
HDAC4-215ENST00000543185 CHD7Q9P2D1 2997 aa11.56□□□□□ -0.56
HDAC4-215ENST00000543185 FLNCQ14315 2725 aa11.56□□□□□ -0.56
HDAC4-215ENST00000543185 CHD9Q3L8U1 2897 aa11.53□□□□□ -0.56
HDAC4-215ENST00000543185 KRTAP29-1A8MX34 341 aaPredicted RBP11.53□□□□□ -0.56
HDAC4-215ENST00000543185 KRTAP1-3Q8IUG1 177 aa11.53□□□□□ -0.56
HDAC4-215ENST00000543185 KALRNO60229 2985 aa11.5□□□□□ -0.57
HDAC4-215ENST00000543185 PLAC4Q8WY50 150 aa11.49□□□□□ -0.57
HDAC4-215ENST00000543185 KRTAP1-1Q07627 177 aa11.47□□□□□ -0.57
HDAC4-215ENST00000543185 KRTAP4-16G5E9R7 235 aaPredicted RBP11.46□□□□□ -0.57
HDAC4-215ENST00000543185 LCE6AA0A183 80 aa11.46□□□□□ -0.58
HDAC4-215ENST00000543185 ADM2Q7Z4H4 148 aa11.45□□□□□ -0.58
HDAC4-215ENST00000543185 ASH1LQ9NR48 2969 aaKnown RBP11.43□□□□□ -0.58
HDAC4-215ENST00000543185 NIPBLQ6KC79 2804 aaeCLIP11.43□□□□□ -0.58
HDAC4-215ENST00000543185 RPS29P62273 56 aaKnown RBP11.42□□□□□ -0.58
HDAC4-215ENST00000543185 TRIOO75962 3097 aa11.42□□□□□ -0.58
HDAC4-215ENST00000543185 TACC2O95359 2948 aa11.35□□□□□ -0.59
HDAC4-215ENST00000543185 HIVEP1P15822 2718 aa11.35□□□□□ -0.59
HDAC4-215ENST00000543185 NF1P21359 2839 aa11.34□□□□□ -0.59
HDAC4-215ENST00000543185 NDUFAF8A1L188 74 aa11.28□□□□□ -0.6
HDAC4-215ENST00000543185 TENM1Q9UKZ4 2725 aa11.27□□□□□ -0.61
HDAC4-215ENST00000543185 NBEAQ8NFP9 2946 aa11.25□□□□□ -0.61
HDAC4-215ENST00000543185 CELSR2Q9HCU4 2923 aa11.22□□□□□ -0.61
HDAC4-215ENST00000543185 C20orf166-AS1Q96NR2 134 aa11.22□□□□□ -0.61
HDAC4-215ENST00000543185 Q5VSD8 79 aa11.2□□□□□ -0.62
HDAC4-215ENST00000543185 PRUNE2Q8WUY3 3088 aa11.2□□□□□ -0.62
HDAC4-215ENST00000543185 TENM3Q9P273 2699 aa11.19□□□□□ -0.62
HDAC4-215ENST00000543185 KRTAP1-5Q9BYS1 174 aa11.19□□□□□ -0.62
HDAC4-215ENST00000543185 WDFY4Q6ZS81 3184 aa11.17□□□□□ -0.62
HDAC4-215ENST00000543185 PP632Q6XCG6 107 aa11.14□□□□□ -0.63
HDAC4-215ENST00000543185 A8MUU9 505 aa11.12□□□□□ -0.63
HDAC4-215ENST00000543185 TGP01266 2768 aa11.09□□□□□ -0.63
HDAC4-215ENST00000543185 COL12A1Q99715 3063 aa11.08□□□□□ -0.63
HDAC4-215ENST00000543185 FREM2Q5SZK8 3169 aa11.08□□□□□ -0.64
HDAC4-215ENST00000543185 NOTCH2NLQ7Z3S9 236 aa11.08□□□□□ -0.64
HDAC4-215ENST00000543185 ZZEF1O43149 2961 aa11.07□□□□□ -0.64
HDAC4-215ENST00000543185 DMXL2Q8TDJ6 3036 aa11.06□□□□□ -0.64
HDAC4-215ENST00000543185 RANBP2P49792 3224 aaKnown RBP11.04□□□□□ -0.64
HDAC4-215ENST00000543185 PDZD2O15018 2839 aa11.03□□□□□ -0.64
HDAC4-215ENST00000543185 XIRP2A4UGR9 3374 aa11.02□□□□□ -0.64
HDAC4-215ENST00000543185 MKI67P46013 3256 aaKnown RBP11.01□□□□□ -0.65
HDAC4-215ENST00000543185 KRTAP10-1P60331 282 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 111.2 ms