RNA–Protein interactions for RNA: ENST00000541586.5

CCM2-218, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,719 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-218ENST00000541586 JMJD7-PLA2G4BH0Y9G9 81 aa16.95■□□□□ 0.3
CCM2-218ENST00000541586 J3QR89 54 aa16.95■□□□□ 0.3
CCM2-218ENST00000541586 C14orf132Q9NPU4 83 aa16.93■□□□□ 0.3
CCM2-218ENST00000541586 NDUFV3P56181 108 aaKnown RBP16.93■□□□□ 0.3
CCM2-218ENST00000541586 KRTAP4-5Q9BYR2 181 aa16.93■□□□□ 0.3
CCM2-218ENST00000541586 KRTAP10-4P60372 401 aaPredicted RBP16.9■□□□□ 0.3
CCM2-218ENST00000541586 ZNF861PO60384 105 aa16.89■□□□□ 0.29
CCM2-218ENST00000541586 RBM3P98179 157 aaKnown RBP16.88■□□□□ 0.29
CCM2-218ENST00000541586 C3orf22Q8N5N4 141 aa16.88■□□□□ 0.29
CCM2-218ENST00000541586 SRRM2Q9UQ35 2752 aaKnown RBP16.88■□□□□ 0.29
CCM2-218ENST00000541586 IGLV7-43P04211 117 aa16.87■□□□□ 0.29
CCM2-218ENST00000541586 GAGE2AQ6NT46 116 aa16.82■□□□□ 0.28
CCM2-218ENST00000541586 SMIM29Q86T20 159 aa16.82■□□□□ 0.28
CCM2-218ENST00000541586 SPRR1BP22528 89 aa16.79■□□□□ 0.28
CCM2-218ENST00000541586 DSCR8Q96T75 97 aa16.79■□□□□ 0.28
CCM2-218ENST00000541586 LOC110117498A0A087WWA1 95 aa16.77■□□□□ 0.28
CCM2-218ENST00000541586 TRBV7-4A0A0J9YYF1 115 aa16.76■□□□□ 0.27
CCM2-218ENST00000541586 SPRR4Q96PI1 79 aa16.76■□□□□ 0.27
CCM2-218ENST00000541586 Q6ZQT0 140 aa16.76■□□□□ 0.27
CCM2-218ENST00000541586 CCKP06307 115 aa16.75■□□□□ 0.27
CCM2-218ENST00000541586 ZNF706Q9Y5V0 76 aaPredicted RBP16.73■□□□□ 0.27
CCM2-218ENST00000541586 FAM240AA0A1B0GVK7 77 aa16.73■□□□□ 0.27
CCM2-218ENST00000541586 PDE6GP18545 87 aa16.71■□□□□ 0.27
CCM2-218ENST00000541586 F8WEM9 126 aa16.7■□□□□ 0.26
CCM2-218ENST00000541586 SPINK6Q6UWN8 80 aa16.7■□□□□ 0.26
CCM2-218ENST00000541586 LINC00483Q53H64 154 aa16.69■□□□□ 0.26
CCM2-218ENST00000541586 ABCA13Q86UQ4 5058 aa16.68■□□□□ 0.26
CCM2-218ENST00000541586 ACYP1P07311 99 aa16.67■□□□□ 0.26
CCM2-218ENST00000541586 CDIP1Q9H305 208 aa16.65■□□□□ 0.26
CCM2-218ENST00000541586 VPS25Q9BRG1 176 aa16.65■□□□□ 0.26
CCM2-218ENST00000541586 PKHD1L1Q86WI1 4243 aa16.64■□□□□ 0.25
CCM2-218ENST00000541586 IGLV8-61A0A075B6I0 122 aa16.63■□□□□ 0.25
CCM2-218ENST00000541586 ANAPC11Q9NYG5 84 aa16.61■□□□□ 0.25
CCM2-218ENST00000541586 FLG2Q5D862 2391 aaPredicted RBP16.6■□□□□ 0.25
CCM2-218ENST00000541586 C21orf62-AS1Q17RA5 79 aa16.57■□□□□ 0.24
CCM2-218ENST00000541586 IGFL1Q6UW32 110 aa16.57■□□□□ 0.24
CCM2-218ENST00000541586 LINC00846Q9NV44 126 aa16.57■□□□□ 0.24
CCM2-218ENST00000541586 IGLV9-49A0A0B4J1Y8 123 aa16.55■□□□□ 0.24
CCM2-218ENST00000541586 A0A0G2JQZ4 141 aa16.55■□□□□ 0.24
CCM2-218ENST00000541586 A0A1W2PNM2 257 aa16.54■□□□□ 0.24
CCM2-218ENST00000541586 MYCBP2O75592 4640 aa16.52■□□□□ 0.24
CCM2-218ENST00000541586 Q6JHZ5 121 aa16.52■□□□□ 0.24
CCM2-218ENST00000541586 LRP1Q07954 4544 aaKnown RBP16.51■□□□□ 0.23
CCM2-218ENST00000541586 C9orf153Q5TBE3 101 aa16.5■□□□□ 0.23
CCM2-218ENST00000541586 Q8NBF4 154 aa16.5■□□□□ 0.23
CCM2-218ENST00000541586 PCLOQ9Y6V0 5065 aa16.46■□□□□ 0.23
CCM2-218ENST00000541586 MOBPQ13875 183 aa16.45■□□□□ 0.22
CCM2-218ENST00000541586 FAT3Q8TDW7 4589 aa16.45■□□□□ 0.22
CCM2-218ENST00000541586 KRTAP1-4P0C5Y4 121 aa16.43■□□□□ 0.22
CCM2-218ENST00000541586 CRYGAP11844 174 aa16.42■□□□□ 0.22
CCM2-218ENST00000541586 A0A1B0GW54 56 aa16.41■□□□□ 0.22
CCM2-218ENST00000541586 UBL5Q9BZL1 73 aa16.41■□□□□ 0.22
CCM2-218ENST00000541586 LINC00643Q86TS7 51 aa16.39■□□□□ 0.21
CCM2-218ENST00000541586 MT-ATP8P03928 68 aa16.39■□□□□ 0.21
CCM2-218ENST00000541586 FAM229BQ4G0N7 80 aa16.39■□□□□ 0.21
CCM2-218ENST00000541586 A0A087X002 238 aa16.38■□□□□ 0.21
CCM2-218ENST00000541586 SIGMAR1Q99720 223 aa16.37■□□□□ 0.21
CCM2-218ENST00000541586 Q6ZVQ6 151 aa16.36■□□□□ 0.21
CCM2-218ENST00000541586 OXTP01178 125 aa16.36■□□□□ 0.21
CCM2-218ENST00000541586 Q6Q795 121 aa16.36■□□□□ 0.21
CCM2-218ENST00000541586 PRR26Q8N8Z3 221 aa16.35■□□□□ 0.21
CCM2-218ENST00000541586 KRTAP13-2Q52LG2 175 aa16.33■□□□□ 0.21
CCM2-218ENST00000541586 KRTAP29-1A8MX34 341 aaPredicted RBP16.33■□□□□ 0.2
CCM2-218ENST00000541586 A0A087WSZ3 146 aa16.3■□□□□ 0.2
CCM2-218ENST00000541586 J3QL48 77 aa16.29■□□□□ 0.2
CCM2-218ENST00000541586 NREPQ16612 68 aa16.29■□□□□ 0.2
CCM2-218ENST00000541586 SSBP3-AS1Q7Z2R9 100 aa16.29■□□□□ 0.2
CCM2-218ENST00000541586 TRBV7-7A0A0K0K1E9 115 aa16.28■□□□□ 0.2
CCM2-218ENST00000541586 HRCT1Q6UXD1 115 aa16.27■□□□□ 0.19
CCM2-218ENST00000541586 TNXBP22105 4242 aa16.25■□□□□ 0.19
CCM2-218ENST00000541586 IGKV3D-7A0A0C4DH55 119 aa16.25■□□□□ 0.19
CCM2-218ENST00000541586 MT1HL1P0DM35 61 aa16.22■□□□□ 0.19
CCM2-218ENST00000541586 KRTAP10-8P60410 259 aa16.22■□□□□ 0.19
CCM2-218ENST00000541586 ATP5EP2Q5VTU8 51 aa16.21■□□□□ 0.19
CCM2-218ENST00000541586 TYMSOSQ8TAI1 123 aa16.2■□□□□ 0.18
CCM2-218ENST00000541586 CD164Q04900 197 aa16.15■□□□□ 0.18
CCM2-218ENST00000541586 CXCL6P80162 114 aa16.14■□□□□ 0.17
CCM2-218ENST00000541586 BPY2O14599 106 aa16.12■□□□□ 0.17
CCM2-218ENST00000541586 IMUPQ9GZP8 106 aa16.12■□□□□ 0.17
CCM2-218ENST00000541586 SS18L2Q9UHA2 77 aa16.08■□□□□ 0.17
CCM2-218ENST00000541586 DMBT1Q9UGM3 2413 aaPredicted RBP16.07■□□□□ 0.16
CCM2-218ENST00000541586 DEFB116Q30KQ4 102 aa16.06■□□□□ 0.16
CCM2-218ENST00000541586 LINC00472Q9H8W2 130 aa16.05■□□□□ 0.16
CCM2-218ENST00000541586 HIST1H4AP62805 103 aaKnown RBP16.04■□□□□ 0.16
CCM2-218ENST00000541586 Q96NJ1 140 aa16■□□□□ 0.15
CCM2-218ENST00000541586 A0A087WVE0 104 aa15.99■□□□□ 0.15
CCM2-218ENST00000541586 DSCR10P59022 87 aa15.99■□□□□ 0.15
CCM2-218ENST00000541586 Q8N9L7 120 aa15.99■□□□□ 0.15
CCM2-218ENST00000541586 C4orf48Q5BLP8 95 aa15.98■□□□□ 0.15
CCM2-218ENST00000541586 LINC00304Q8N9R0 145 aa15.98■□□□□ 0.15
CCM2-218ENST00000541586 SCGB1A1P11684 91 aa15.94■□□□□ 0.14
CCM2-218ENST00000541586 IGKV4-1P06312 121 aa15.94■□□□□ 0.14
CCM2-218ENST00000541586 Q5XG85 94 aa15.94■□□□□ 0.14
CCM2-218ENST00000541586 SPINK1P00995 79 aa15.93■□□□□ 0.14
CCM2-218ENST00000541586 ASB16-AS1Q495Z4 193 aa15.91■□□□□ 0.14
CCM2-218ENST00000541586 HERC1Q15751 4861 aa15.91■□□□□ 0.14
CCM2-218ENST00000541586 J3KT08 172 aa15.91■□□□□ 0.14
CCM2-218ENST00000541586 K7EQZ3 153 aa15.91■□□□□ 0.14
CCM2-218ENST00000541586 SPAG11AQ6PDA7 123 aa15.89■□□□□ 0.13
CCM2-218ENST00000541586 LIMD2Q9BT23 127 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms